Protein–RNA interactions for Protein: P62891

RPL39, 60S ribosomal protein L39, humanhuman

Known RBP Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPL39P62891 YPEL1-201ENST00000339468 4329 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
RPL39P62891 RHOC-204ENST00000369633 1295 ntAPPRIS P1 TSL 3 BASIC11.7□□□□□ -0.54
RPL39P62891 LCK-206ENST00000373564 2137 ntTSL 5 BASIC11.7□□□□□ -0.54
RPL39P62891 TNFRSF10C-202ENST00000397703 1242 ntTSL 2 BASIC11.7□□□□□ -0.54
RPL39P62891 RNF152P1-201ENST00000397754 604 ntBASIC11.7□□□□□ -0.54
RPL39P62891 CTNS-203ENST00000399306 803 ntTSL 3 BASIC11.7□□□□□ -0.54
RPL39P62891 AC087499.1-201ENST00000418141 1075 ntBASIC11.7□□□□□ -0.54
RPL39P62891 AL645929.1-201ENST00000420084 975 ntBASIC11.7□□□□□ -0.54
RPL39P62891 AL137013.1-201ENST00000432946 1228 ntBASIC11.7□□□□□ -0.54
RPL39P62891 DANCR-204ENST00000444958 709 ntTSL 3 BASIC11.7□□□□□ -0.54
RPL39P62891 NDUFS3-213ENST00000534716 1263 ntTSL 2 BASIC11.7□□□□□ -0.54
RPL39P62891 CLN6-204ENST00000564752 900 ntTSL 3 BASIC11.7□□□□□ -0.54
RPL39P62891 ULK4P3-205ENST00000568486 1158 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
RPL39P62891 AC090616.6-201ENST00000582640 721 ntBASIC11.7□□□□□ -0.54
RPL39P62891 AC083849.1-201ENST00000615227 514 ntBASIC11.7□□□□□ -0.54
RPL39P62891 CLN6-214ENST00000636314 442 ntTSL 3 BASIC11.7□□□□□ -0.54
RPL39P62891 AC022613.1-201ENST00000536835 2530 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
RPL39P62891 ATP5S-201ENST00000245448 1671 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
RPL39P62891 CCDC110-201ENST00000307588 2898 ntAPPRIS P3 TSL 1 (best) BASIC11.7□□□□□ -0.54
RPL39P62891 GHRHR-205ENST00000409904 1613 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
RPL39P62891 UNC13B-203ENST00000396787 5293 ntAPPRIS ALT2 TSL 5 BASIC11.7□□□□□ -0.54
RPL39P62891 GPR108-202ENST00000430424 2009 ntAPPRIS ALT2 TSL 5 BASIC11.7□□□□□ -0.54
RPL39P62891 AC007326.2-201ENST00000624224 7579 ntBASIC11.7□□□□□ -0.54
RPL39P62891 ADAD1-201ENST00000296513 1961 ntAPPRIS P1 TSL 2 BASIC11.7□□□□□ -0.54
RPL39P62891 TIMP3-201ENST00000266085 4603 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
RPL39P62891 SLC34A1-204ENST00000512593 1912 ntTSL 2 BASIC11.7□□□□□ -0.54
RPL39P62891 YPEL3-203ENST00000562641 1941 ntTSL 3 BASIC11.7□□□□□ -0.54
RPL39P62891 PDE8B-204ENST00000342343 2677 ntAPPRIS ALT2 TSL 1 (best) BASIC11.7□□□□□ -0.54
RPL39P62891 SIRT6-201ENST00000305232 1506 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
RPL39P62891 HLA-B-249ENST00000412585 1547 ntAPPRIS P1 BASIC11.7□□□□□ -0.54
RPL39P62891 NOS1AP-201ENST00000361897 4931 ntAPPRIS P3 TSL 1 (best) BASIC11.7□□□□□ -0.54
RPL39P62891 SEMA5B-201ENST00000195173 4523 ntAPPRIS ALT2 TSL 5 BASIC11.7□□□□□ -0.54
RPL39P62891 DDHD2-205ENST00000520272 4532 ntAPPRIS P1 TSL 2 BASIC11.7□□□□□ -0.54
RPL39P62891 GARS-201ENST00000389266 2634 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
RPL39P62891 SFRP4-201ENST00000436072 2966 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
RPL39P62891 RNASEH2B-202ENST00000422660 4830 ntTSL 5 BASIC11.7□□□□□ -0.54
RPL39P62891 AQP1-201ENST00000311813 2913 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
RPL39P62891 C11orf80-203ENST00000525449 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC11.7□□□□□ -0.54
RPL39P62891 FAM160B1-202ENST00000369248 5810 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
RPL39P62891 GALNT14-201ENST00000324589 2169 ntTSL 2 BASIC11.69□□□□□ -0.54
RPL39P62891 UBAC2-202ENST00000376440 2525 ntTSL 2 BASIC11.69□□□□□ -0.54
RPL39P62891 TRPV4-204ENST00000536838 2514 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
RPL39P62891 ARSE-206ENST00000545496 2506 ntTSL 2 BASIC11.69□□□□□ -0.54
RPL39P62891 BCAT2-209ENST00000599246 1449 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
RPL39P62891 DNAJB8-AS1-201ENST00000471626 1798 ntTSL 2 BASIC11.69□□□□□ -0.54
RPL39P62891 BANK1-207ENST00000508653 2115 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
RPL39P62891 C18orf25-206ENST00000619301 5264 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
RPL39P62891 THNSL2-202ENST00000343544 2052 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
RPL39P62891 LINC00887-203ENST00000429578 1717 ntTSL 2 BASIC11.69□□□□□ -0.54
RPL39P62891 PTPRN2-204ENST00000404321 1374 ntTSL 5 BASIC11.69□□□□□ -0.54
RPL39P62891 NFATC4-204ENST00000424781 5488 ntAPPRIS ALT2 TSL 1 (best) BASIC11.69□□□□□ -0.54
RPL39P62891 RNF11-201ENST00000242719 3084 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
RPL39P62891 BRF1-211ENST00000547530 3358 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
RPL39P62891 DLGAP2-215ENST00000637795 3380 ntTSL 5 BASIC11.69□□□□□ -0.54
RPL39P62891 GLUL-202ENST00000331872 4364 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
RPL39P62891 MFGE8-215ENST00000566497 1689 ntAPPRIS P1 TSL 5 BASIC11.69□□□□□ -0.54
RPL39P62891 PIK3R1-211ENST00000521381 7011 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
RPL39P62891 CNKSR1-214ENST00000531191 2673 ntTSL 5 BASIC11.69□□□□□ -0.54
RPL39P62891 TTC22-202ENST00000371276 3345 ntAPPRIS P1 TSL 5 BASIC11.69□□□□□ -0.54
RPL39P62891 RASGRP2-201ENST00000354024 2310 ntAPPRIS P2 TSL 1 (best) BASIC11.69□□□□□ -0.54
RPL39P62891 NTMT1-203ENST00000372483 1315 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
RPL39P62891 IRF2BP2-202ENST00000366610 4615 ntAPPRIS ALT2 TSL 1 (best) BASIC11.69□□□□□ -0.54
RPL39P62891 DNM1-201ENST00000341179 3254 ntAPPRIS ALT1 TSL 1 (best) BASIC11.69□□□□□ -0.54
RPL39P62891 ZFP41-203ENST00000520584 3284 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
RPL39P62891 C1orf43-201ENST00000350592 1610 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
RPL39P62891 CES4A-207ENST00000540947 2284 ntAPPRIS P2 TSL 2 BASIC11.69□□□□□ -0.54
RPL39P62891 AC099063.4-201ENST00000641099 1602 ntBASIC11.69□□□□□ -0.54
RPL39P62891 FLI1-207ENST00000534087 3859 ntTSL 2 BASIC11.69□□□□□ -0.54
RPL39P62891 ADAMTS2-201ENST00000251582 6754 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
RPL39P62891 SYAP1-201ENST00000380155 6129 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
RPL39P62891 KRAS-202ENST00000311936 5765 ntAPPRIS ALT1 TSL 1 (best) BASIC11.69□□□□□ -0.54
RPL39P62891 HBZ-201ENST00000252951 755 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
RPL39P62891 CLN3-202ENST00000355477 1173 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
RPL39P62891 S100A3-201ENST00000368712 579 ntAPPRIS P1 TSL 3 BASIC11.69□□□□□ -0.54
RPL39P62891 ZFYVE1-202ENST00000394207 1183 ntTSL 2 BASIC11.69□□□□□ -0.54
RPL39P62891 CXADR-204ENST00000400166 1080 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
RPL39P62891 GGT1-208ENST00000404920 657 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
RPL39P62891 AL031587.1-201ENST00000410099 1055 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
RPL39P62891 AL020989.1-201ENST00000422979 469 ntBASIC11.69□□□□□ -0.54
RPL39P62891 MMP24-AS1-201ENST00000424358 867 ntAPPRIS P1 TSL 2 BASIC11.69□□□□□ -0.54
RPL39P62891 AL390719.1-201ENST00000427998 977 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
RPL39P62891 AC092647.4-201ENST00000457211 535 ntBASIC11.69□□□□□ -0.54
RPL39P62891 CDKN2AIPNL-202ENST00000458198 1223 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
RPL39P62891 GGTLC2-203ENST00000480559 657 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
RPL39P62891 AC091607.1-201ENST00000490318 1060 ntBASIC11.69□□□□□ -0.54
RPL39P62891 KHDRBS1-204ENST00000492989 1215 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
RPL39P62891 ACY1-210ENST00000494103 1298 ntTSL 3 BASIC11.69□□□□□ -0.54
RPL39P62891 LY6E-213ENST00000522528 606 ntTSL 3 BASIC11.69□□□□□ -0.54
RPL39P62891 AC104971.2-201ENST00000588144 1209 ntTSL 2 BASIC11.69□□□□□ -0.54
RPL39P62891 YIPF2-209ENST00000590329 958 ntTSL 5 BASIC11.69□□□□□ -0.54
RPL39P62891 GCK-203ENST00000395796 2539 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
RPL39P62891 LYPLA1-214ENST00000618741 2526 ntTSL 5 BASIC11.69□□□□□ -0.54
RPL39P62891 RAB37-208ENST00000402449 1560 ntAPPRIS P3 TSL 2 BASIC11.69□□□□□ -0.54
RPL39P62891 PMPCAP1-201ENST00000508114 1576 ntBASIC11.69□□□□□ -0.54
RPL39P62891 KIAA1841-201ENST00000295031 3116 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
RPL39P62891 SKP2-201ENST00000274254 1537 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
RPL39P62891 PARVB-210ENST00000619710 1530 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
RPL39P62891 RCOR1-201ENST00000262241 5754 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
RPL39P62891 HSPA4L-204ENST00000508776 3020 ntAPPRIS P1 TSL 2 BASIC11.69□□□□□ -0.54
RPL39P62891 CBLN4-201ENST00000064571 3024 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Retrieved 100 of 98,524 protein–RNA pairs in 36.5 ms