Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 AC015712.1-203ENST00000559331 593 ntTSL 3 BASIC15.78■□□□□ 0.12
MSX2P35548 TERC-201ENST00000602385 541 ntBASIC15.78■□□□□ 0.12
MSX2P35548 NDUFV2-AS1-203ENST00000608008 779 ntBASIC15.78■□□□□ 0.12
MSX2P35548 PHF23-202ENST00000454255 1662 ntTSL 2 BASIC15.78■□□□□ 0.12
MSX2P35548 AC099508.1-201ENST00000499110 1666 ntTSL 4 BASIC15.78■□□□□ 0.12
MSX2P35548 LDB3-208ENST00000623007 1664 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
MSX2P35548 IER5-201ENST00000367577 4188 ntAPPRIS P1 BASIC15.78■□□□□ 0.12
MSX2P35548 ASCL1-201ENST00000266744 2472 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
MSX2P35548 CBX7-201ENST00000216133 4081 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
MSX2P35548 TARSL2-201ENST00000335968 3610 ntAPPRIS P2 TSL 1 (best) BASIC15.78■□□□□ 0.12
MSX2P35548 SLC25A37-206ENST00000519973 4823 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
MSX2P35548 TMC4-210ENST00000619895 2373 ntAPPRIS P3 TSL 1 (best) BASIC15.78■□□□□ 0.12
MSX2P35548 ATG3-201ENST00000283290 1570 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
MSX2P35548 CACNA1G-201ENST00000352832 7848 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.12
MSX2P35548 SPOCK2-202ENST00000373109 5445 ntAPPRIS P2 TSL 1 (best) BASIC15.78■□□□□ 0.12
MSX2P35548 PSEN2-203ENST00000422240 1947 ntAPPRIS ALT1 TSL 2 BASIC15.78■□□□□ 0.12
MSX2P35548 IRAK1-203ENST00000369980 3666 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
MSX2P35548 FAM181A-201ENST00000267594 1816 ntTSL 2 BASIC15.78■□□□□ 0.12
MSX2P35548 YTHDC1-202ENST00000355665 3244 ntAPPRIS P3 TSL 1 (best) BASIC15.77■□□□□ 0.12
MSX2P35548 DFFA-201ENST00000377036 1403 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
MSX2P35548 SSB-202ENST00000409333 1782 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
MSX2P35548 TCP10-202ENST00000397829 2141 ntAPPRIS P2 TSL 1 (best) BASIC15.77■□□□□ 0.12
MSX2P35548 TNKS1BP1-207ENST00000532437 5952 ntAPPRIS P2 TSL 1 (best) BASIC15.77■□□□□ 0.12
MSX2P35548 MICAL1-201ENST00000358577 3142 ntAPPRIS ALT2 TSL 1 (best) BASIC15.77■□□□□ 0.12
MSX2P35548 ISPD-201ENST00000399310 1709 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
MSX2P35548 SLC4A2-202ENST00000413384 4142 ntAPPRIS P3 TSL 1 (best) BASIC15.77■□□□□ 0.12
MSX2P35548 CNST-203ENST00000366513 5126 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
MSX2P35548 CISH-201ENST00000348721 2043 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
MSX2P35548 PPP3CA-207ENST00000512215 4007 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
MSX2P35548 PPP2CA-203ENST00000481195 4649 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
MSX2P35548 CNOT8-202ENST00000403027 2604 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
MSX2P35548 ISCA2-204ENST00000556816 2626 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
MSX2P35548 SPERT-201ENST00000310521 1613 ntAPPRIS P3 TSL 1 (best) BASIC15.77■□□□□ 0.12
MSX2P35548 LINC01267-201ENST00000502417 2284 ntTSL 2 BASIC15.77■□□□□ 0.12
MSX2P35548 ARPP19-202ENST00000561650 3245 ntTSL 2 BASIC15.77■□□□□ 0.12
MSX2P35548 YPEL3-203ENST00000562641 1941 ntTSL 3 BASIC15.77■□□□□ 0.12
MSX2P35548 HAAO-201ENST00000294973 1265 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
MSX2P35548 ZNF81-201ENST00000334937 610 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
MSX2P35548 TNFSF13-204ENST00000396542 726 ntTSL 3 BASIC15.77■□□□□ 0.12
MSX2P35548 TNFRSF10C-202ENST00000397703 1242 ntTSL 2 BASIC15.77■□□□□ 0.12
MSX2P35548 CTNS-203ENST00000399306 803 ntTSL 3 BASIC15.77■□□□□ 0.12
MSX2P35548 AC114763.1-202ENST00000414911 867 ntTSL 3 BASIC15.77■□□□□ 0.12
MSX2P35548 AL096828.1-201ENST00000423020 542 ntTSL 4 BASIC15.77■□□□□ 0.12
MSX2P35548 AP000344.1-201ENST00000454268 641 ntTSL 5 BASIC15.77■□□□□ 0.12
MSX2P35548 AP000344.1-202ENST00000457193 586 ntTSL 4 BASIC15.77■□□□□ 0.12
MSX2P35548 CCNG1-211ENST00000512163 919 ntTSL 2 BASIC15.77■□□□□ 0.12
MSX2P35548 CBLN1-202ENST00000536749 718 ntAPPRIS P1 TSL 5 BASIC15.77■□□□□ 0.12
MSX2P35548 AC106782.2-201ENST00000563252 992 ntTSL 3 BASIC15.77■□□□□ 0.12
MSX2P35548 CMC2-212ENST00000565650 671 ntAPPRIS P1 TSL 2 BASIC15.77■□□□□ 0.12
MSX2P35548 AC104758.1-202ENST00000568184 602 ntTSL 3 BASIC15.77■□□□□ 0.12
MSX2P35548 SLC39A11-207ENST00000579732 1004 ntTSL 2 BASIC15.77■□□□□ 0.12
MSX2P35548 DHRS2-210ENST00000611765 1287 ntAPPRIS ALT2 TSL 2 BASIC15.77■□□□□ 0.12
MSX2P35548 PGAP2-205ENST00000396993 1566 ntTSL 1 (best) BASIC15.77■□□□□ 0.11
MSX2P35548 FGD1-201ENST00000375135 4275 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
MSX2P35548 AC106881.1-201ENST00000605849 3329 ntBASIC15.77■□□□□ 0.11
MSX2P35548 CAMTA1-201ENST00000303635 8444 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
MSX2P35548 MCHR2-201ENST00000281806 2368 ntAPPRIS P1 TSL 2 BASIC15.77■□□□□ 0.11
MSX2P35548 SLC39A1-203ENST00000368621 2398 ntAPPRIS P1 TSL 2 BASIC15.77■□□□□ 0.11
MSX2P35548 CRY2-201ENST00000417225 2053 ntTSL 2 BASIC15.77■□□□□ 0.11
MSX2P35548 DNAJB8-AS1-201ENST00000471626 1798 ntTSL 2 BASIC15.77■□□□□ 0.11
MSX2P35548 GPSM1-202ENST00000354753 3533 ntAPPRIS ALT2 TSL 5 BASIC15.77■□□□□ 0.11
MSX2P35548 PBX1-215ENST00000559240 2866 ntTSL 5 BASIC15.77■□□□□ 0.11
MSX2P35548 AC069224.1-201ENST00000566372 1715 ntBASIC15.77■□□□□ 0.11
MSX2P35548 TMEM143-203ENST00000435956 2272 ntTSL 2 BASIC15.77■□□□□ 0.11
MSX2P35548 HAPLN3-201ENST00000359595 1980 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
MSX2P35548 ATP6AP2-215ENST00000636409 1962 ntAPPRIS ALT2 TSL 2 BASIC15.76■□□□□ 0.11
MSX2P35548 LIMS2-205ENST00000409455 2500 ntAPPRIS ALT1 TSL 1 (best) BASIC15.76■□□□□ 0.11
MSX2P35548 FRA10AC1-201ENST00000359204 3089 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
MSX2P35548 ATP5S-201ENST00000245448 1671 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
MSX2P35548 PACS1-209ENST00000529757 1688 ntAPPRIS ALT2 TSL 1 (best) BASIC15.76■□□□□ 0.11
MSX2P35548 ATP2A3-204ENST00000397035 4182 ntTSL 5 BASIC15.76■□□□□ 0.11
MSX2P35548 NELFA-203ENST00000411638 2199 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
MSX2P35548 UGDH-201ENST00000316423 3216 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
MSX2P35548 CYB561-219ENST00000584031 3200 ntTSL 2 BASIC15.76■□□□□ 0.11
MSX2P35548 PCGF3-213ENST00000620529 1899 ntBASIC15.76■□□□□ 0.11
MSX2P35548 LINC01565-201ENST00000356020 2697 ntTSL 2 BASIC15.76■□□□□ 0.11
MSX2P35548 DEGS1-201ENST00000323699 2101 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
MSX2P35548 SHH-201ENST00000297261 4454 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
MSX2P35548 PHB-201ENST00000300408 1832 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
MSX2P35548 HECTD1-201ENST00000399332 9134 ntAPPRIS P1 TSL 5 BASIC15.76■□□□□ 0.11
MSX2P35548 STUM-201ENST00000366788 7705 ntAPPRIS P2 TSL 5 BASIC15.76■□□□□ 0.11
MSX2P35548 RGPD6-202ENST00000330331 2848 ntTSL 2 BASIC15.76■□□□□ 0.11
MSX2P35548 RGPD8-202ENST00000330575 2848 ntTSL 2 BASIC15.76■□□□□ 0.11
MSX2P35548 GGCT-202ENST00000275428 1173 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
MSX2P35548 PYDC1-201ENST00000302964 813 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
MSX2P35548 SPIN2B-202ENST00000333933 1258 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
MSX2P35548 HCCS-202ENST00000380762 1072 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
MSX2P35548 CRELD2-204ENST00000407217 1230 ntAPPRIS ALT2 TSL 1 (best) BASIC15.76■□□□□ 0.11
MSX2P35548 AK4P3-201ENST00000418260 669 ntBASIC15.76■□□□□ 0.11
MSX2P35548 DANCR-204ENST00000444958 709 ntTSL 3 BASIC15.76■□□□□ 0.11
MSX2P35548 PCAT7-201ENST00000452148 1164 ntTSL 2 BASIC15.76■□□□□ 0.11
MSX2P35548 AL365295.1-202ENST00000456100 562 ntTSL 4 BASIC15.76■□□□□ 0.11
MSX2P35548 CYB561-217ENST00000582997 877 ntTSL 5 BASIC15.76■□□□□ 0.11
MSX2P35548 IFT20-215ENST00000585313 852 ntAPPRIS P4 TSL 3 BASIC15.76■□□□□ 0.11
MSX2P35548 COPE-211ENST00000600932 1144 ntTSL 5 BASIC15.76■□□□□ 0.11
MSX2P35548 BCL2L12-210ENST00000611631 1259 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
MSX2P35548 AC005363.2-201ENST00000618631 242 ntBASIC15.76■□□□□ 0.11
MSX2P35548 AC006011.2-201ENST00000621313 1158 ntBASIC15.76■□□□□ 0.11
MSX2P35548 Metazoa_SRP.104-201ENST00000622099 280 ntBASIC15.76■□□□□ 0.11
MSX2P35548 MALSU1-202ENST00000466681 3044 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 45 ms