Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 AC104581.1-203ENST00000640240 353 ntTSL 2 BASIC16.16■□□□□ 0.18
SHMT2P34897 TK2-207ENST00000544898 3441 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
SHMT2P34897 SLCO5A1-203ENST00000524945 3725 ntTSL 2 BASIC16.16■□□□□ 0.18
SHMT2P34897 NR2C1-219ENST00000622476 1561 ntTSL 5 BASIC16.16■□□□□ 0.18
SHMT2P34897 CD276-213ENST00000561213 2690 ntAPPRIS ALT2 TSL 2 BASIC16.16■□□□□ 0.18
SHMT2P34897 COQ8B-202ENST00000324464 2443 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
SHMT2P34897 DGKZ-202ENST00000343674 3816 ntAPPRIS P3 TSL 2 BASIC16.16■□□□□ 0.18
SHMT2P34897 DNM2-202ENST00000359692 3588 ntAPPRIS P5 TSL 1 (best) BASIC16.16■□□□□ 0.18
SHMT2P34897 LINC02167-203ENST00000566900 1489 ntTSL 2 BASIC16.16■□□□□ 0.18
SHMT2P34897 AFTPH-202ENST00000238856 4040 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
SHMT2P34897 NSUN2-201ENST00000264670 3303 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
SHMT2P34897 PRICKLE1-211ENST00000639566 3341 ntAPPRIS P1 TSL 5 BASIC16.16■□□□□ 0.18
SHMT2P34897 PLIN1-202ENST00000430628 2900 ntAPPRIS P1 TSL 5 BASIC16.15■□□□□ 0.18
SHMT2P34897 C5orf24-202ENST00000394976 5065 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
SHMT2P34897 POU4F2-201ENST00000281321 3144 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
SHMT2P34897 ATP5S-201ENST00000245448 1671 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
SHMT2P34897 FAM53C-202ENST00000434981 1686 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
SHMT2P34897 PAAF1-205ENST00000535604 1695 ntTSL 5 BASIC16.15■□□□□ 0.18
SHMT2P34897 AC022188.1-201ENST00000620960 1664 ntBASIC16.15■□□□□ 0.18
SHMT2P34897 CNTNAP3-201ENST00000297668 5064 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
SHMT2P34897 B3GNT4-206ENST00000546192 2749 ntAPPRIS P1 TSL 2 BASIC16.15■□□□□ 0.18
SHMT2P34897 MGEA5-203ENST00000370094 3314 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
SHMT2P34897 RAMP1-201ENST00000254661 910 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
SHMT2P34897 EDN3-202ENST00000337938 2636 ntAPPRIS P4 TSL 1 (best) BASIC16.15■□□□□ 0.18
SHMT2P34897 PDLIM7-201ENST00000355572 977 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
SHMT2P34897 MAGI3-203ENST00000369615 6508 ntAPPRIS P1 TSL 5 BASIC16.15■□□□□ 0.18
SHMT2P34897 DOLPP1-202ENST00000372546 2177 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
SHMT2P34897 CD99-202ENST00000381180 530 ntTSL 2 BASIC16.15■□□□□ 0.18
SHMT2P34897 PSMC3IP-202ENST00000393795 1416 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
SHMT2P34897 AL162231.1-204ENST00000423809 477 ntAPPRIS ALT2 TSL 3 BASIC16.15■□□□□ 0.18
SHMT2P34897 TFR2-202ENST00000431692 2631 ntTSL 5 BASIC16.15■□□□□ 0.18
SHMT2P34897 AC005281.1-201ENST00000433040 911 ntTSL 5 BASIC16.15■□□□□ 0.18
SHMT2P34897 IQCE-210ENST00000438376 2170 ntAPPRIS ALT2 TSL 5 BASIC16.15■□□□□ 0.18
SHMT2P34897 AKIRIN1-203ENST00000446189 1243 ntTSL 2 BASIC16.15■□□□□ 0.18
SHMT2P34897 AL390729.1-201ENST00000456651 587 ntTSL 2 BASIC16.15■□□□□ 0.18
SHMT2P34897 HLA-J-202ENST00000469281 1241 ntBASIC16.15■□□□□ 0.18
SHMT2P34897 GMDS-AS1-205ENST00000529893 900 ntTSL 5 BASIC16.15■□□□□ 0.18
SHMT2P34897 PUS1-205ENST00000535067 838 ntTSL 3 BASIC16.15■□□□□ 0.18
SHMT2P34897 CCND1-203ENST00000536559 553 ntTSL 3 BASIC16.15■□□□□ 0.18
SHMT2P34897 ZNF580-202ENST00000543039 1707 ntAPPRIS P1 BASIC16.15■□□□□ 0.18
SHMT2P34897 C17orf49-203ENST00000546760 764 ntTSL 5 BASIC16.15■□□□□ 0.18
SHMT2P34897 RARRES2P8-201ENST00000566335 367 ntBASIC16.15■□□□□ 0.18
SHMT2P34897 AC009630.3-201ENST00000581909 729 ntTSL 5 BASIC16.15■□□□□ 0.18
SHMT2P34897 MTX1-207ENST00000609421 1085 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
SHMT2P34897 TVP23A-210ENST00000612195 1298 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
SHMT2P34897 FAM156B-207ENST00000616419 2032 ntAPPRIS P2 TSL 2 BASIC16.15■□□□□ 0.18
SHMT2P34897 FAM156A-212ENST00000617970 2032 ntAPPRIS P2 TSL 2 BASIC16.15■□□□□ 0.18
SHMT2P34897 AL691403.2-201ENST00000618460 490 ntBASIC16.15■□□□□ 0.18
SHMT2P34897 AC247036.6-201ENST00000632950 410 ntAPPRIS P1 BASIC16.15■□□□□ 0.18
SHMT2P34897 AC079781.4-201ENST00000641908 219 ntBASIC16.15■□□□□ 0.18
SHMT2P34897 CHKA-201ENST00000265689 2530 ntAPPRIS P4 TSL 1 (best) BASIC16.15■□□□□ 0.18
SHMT2P34897 CYP11A1-201ENST00000268053 1934 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
SHMT2P34897 TYSND1-201ENST00000287078 3644 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
SHMT2P34897 TAOK2-202ENST00000308893 5169 ntAPPRIS P4 TSL 1 (best) BASIC16.15■□□□□ 0.18
SHMT2P34897 ATP6AP2-225ENST00000637482 1648 ntAPPRIS ALT2 TSL 5 BASIC16.15■□□□□ 0.18
SHMT2P34897 CAMKV-204ENST00000466940 1475 ntTSL 2 BASIC16.15■□□□□ 0.18
SHMT2P34897 ATXN2-219ENST00000550104 4648 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
SHMT2P34897 FAM189B-202ENST00000361361 3082 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
SHMT2P34897 TTC24-202ENST00000368237 1969 ntAPPRIS P1 TSL 5 BASIC16.15■□□□□ 0.18
SHMT2P34897 ACP5-212ENST00000592828 1699 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.18
SHMT2P34897 NUCB1-202ENST00000407032 2158 ntAPPRIS P2 TSL 5 BASIC16.14■□□□□ 0.17
SHMT2P34897 KDM6B-202ENST00000448097 5422 ntAPPRIS ALT2 TSL 5 BASIC16.14■□□□□ 0.17
SHMT2P34897 ZNF799-201ENST00000419318 3036 ntTSL 2 BASIC16.14■□□□□ 0.17
SHMT2P34897 GALNT9-202ENST00000397325 1727 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
SHMT2P34897 LRRC14-205ENST00000529022 2243 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
SHMT2P34897 HOXA10-202ENST00000396344 1570 ntAPPRIS ALT1 TSL 1 (best) BASIC16.14■□□□□ 0.17
SHMT2P34897 COQ10A-202ENST00000433805 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
SHMT2P34897 TULP2-201ENST00000221399 1754 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
SHMT2P34897 SIGLEC7-202ENST00000317643 1754 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
SHMT2P34897 SNX33P1-201ENST00000592116 1762 ntBASIC16.14■□□□□ 0.17
SHMT2P34897 FAM76B-201ENST00000358780 3952 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.17
SHMT2P34897 RPS17-201ENST00000330244 592 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
SHMT2P34897 MRPL55-208ENST00000366734 990 ntAPPRIS P1 TSL 2 BASIC16.14■□□□□ 0.17
SHMT2P34897 MRPL55-217ENST00000366746 565 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
SHMT2P34897 PARK7-203ENST00000377491 977 ntAPPRIS P1 TSL 3 BASIC16.14■□□□□ 0.17
SHMT2P34897 SUMO1-201ENST00000392244 831 ntTSL 2 BASIC16.14■□□□□ 0.17
SHMT2P34897 SUMO1-209ENST00000409712 761 ntTSL 2 BASIC16.14■□□□□ 0.17
SHMT2P34897 HRAS-204ENST00000417302 1233 ntTSL 5 BASIC16.14■□□□□ 0.17
SHMT2P34897 AL671277.1-201ENST00000429656 993 ntBASIC16.14■□□□□ 0.17
SHMT2P34897 HRAS-205ENST00000451590 1151 ntAPPRIS P1 TSL 2 BASIC16.14■□□□□ 0.17
SHMT2P34897 LINC01640-201ENST00000452505 550 ntTSL 4 BASIC16.14■□□□□ 0.17
SHMT2P34897 RN7SL589P-201ENST00000481268 310 ntBASIC16.14■□□□□ 0.17
SHMT2P34897 FAM153C-206ENST00000507848 1071 ntAPPRIS ALT2 TSL 2 BASIC16.14■□□□□ 0.17
SHMT2P34897 AC226118.1-201ENST00000515213 2146 ntTSL 2 BASIC16.14■□□□□ 0.17
SHMT2P34897 SMCO4-204ENST00000527149 472 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.17
SHMT2P34897 KRTAP5-9-201ENST00000528743 1136 ntAPPRIS P1 BASIC16.14■□□□□ 0.17
SHMT2P34897 LHX5-AS1-201ENST00000551357 522 ntTSL 2 BASIC16.14■□□□□ 0.17
SHMT2P34897 PYCR1-207ENST00000577756 1144 ntTSL 2 BASIC16.14■□□□□ 0.17
SHMT2P34897 GPR42-202ENST00000597214 1182 ntAPPRIS P1 BASIC16.14■□□□□ 0.17
SHMT2P34897 SLC9A3-AS1-205ENST00000606319 477 ntTSL 3 BASIC16.14■□□□□ 0.17
SHMT2P34897 CDC42EP4-209ENST00000630622 240 ntTSL 5 BASIC16.14■□□□□ 0.17
SHMT2P34897 AC134684.3-201ENST00000641758 218 ntBASIC16.14■□□□□ 0.17
SHMT2P34897 IQCE-217ENST00000623361 6775 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
SHMT2P34897 CLCNKA-203ENST00000439316 1997 ntTSL 2 BASIC16.14■□□□□ 0.17
SHMT2P34897 ACSM2B-211ENST00000567001 1988 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
SHMT2P34897 AL671710.1-201ENST00000610245 2349 ntBASIC16.14■□□□□ 0.17
SHMT2P34897 WLS-202ENST00000354777 2037 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
SHMT2P34897 ACTG1-208ENST00000575087 2001 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.17
SHMT2P34897 AKAP8P1-201ENST00000434743 1349 ntBASIC16.14■□□□□ 0.17
SHMT2P34897 CNOT6-207ENST00000618123 6250 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 44.8 ms