Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 AL139130.1-201ENST00000451362 5586 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
SDC1P18827 SPCS2-201ENST00000263672 2708 ntAPPRIS P2 TSL 1 (best) BASIC15.7■□□□□ 0.1
SDC1P18827 REEP4-202ENST00000334530 1476 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
SDC1P18827 TSPAN12-202ENST00000415871 1495 ntAPPRIS P1 TSL 5 BASIC15.7■□□□□ 0.1
SDC1P18827 ARFGAP1-210ENST00000519273 3176 ntTSL 2 BASIC15.7■□□□□ 0.1
SDC1P18827 GPR89B-201ENST00000314163 1934 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
SDC1P18827 PSEN2-203ENST00000422240 1947 ntAPPRIS ALT1 TSL 2 BASIC15.7■□□□□ 0.1
SDC1P18827 IQCF5-AS1-201ENST00000440723 2000 ntTSL 2 BASIC15.7■□□□□ 0.1
SDC1P18827 LINC01118-203ENST00000479311 1588 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
SDC1P18827 CACNA1A-253ENST00000637927 6847 ntAPPRIS ALT2 TSL 5 BASIC15.7■□□□□ 0.1
SDC1P18827 RASSF1-205ENST00000395126 1657 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
SDC1P18827 ZNF213-206ENST00000574902 3208 ntAPPRIS P1 TSL 5 BASIC15.7■□□□□ 0.1
SDC1P18827 KANK1-204ENST00000382293 5249 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
SDC1P18827 ZSCAN18-208ENST00000595944 1768 ntTSL 2 BASIC15.7■□□□□ 0.1
SDC1P18827 FAM3D-201ENST00000358781 1319 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
SDC1P18827 CLEC18B-201ENST00000339953 1865 ntAPPRIS P2 TSL 1 (best) BASIC15.69■□□□□ 0.1
SDC1P18827 CLEC18C-202ENST00000536907 1865 ntAPPRIS ALT2 TSL 5 BASIC15.69■□□□□ 0.1
SDC1P18827 DEF8-225ENST00000569453 1852 ntAPPRIS P4 TSL 2 BASIC15.69■□□□□ 0.1
SDC1P18827 ANXA11-203ENST00000422982 2534 ntAPPRIS P3 TSL 1 (best) BASIC15.69■□□□□ 0.1
SDC1P18827 DRG2-201ENST00000225729 1964 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
SDC1P18827 CCDC59-201ENST00000256151 1983 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
SDC1P18827 MAPKAP1-206ENST00000373511 3252 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
SDC1P18827 SFTPA2-201ENST00000372325 2189 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
SDC1P18827 PIK3R6-203ENST00000614407 2265 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
SDC1P18827 FBXW9-201ENST00000393261 1738 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
SDC1P18827 RGS12-203ENST00000344733 5469 ntAPPRIS P4 TSL 1 (best) BASIC15.69■□□□□ 0.1
SDC1P18827 AC112504.1-201ENST00000623415 1841 ntBASIC15.69■□□□□ 0.1
SDC1P18827 CDK11B-204ENST00000407249 2677 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
SDC1P18827 TSC2-222ENST00000568454 5434 ntAPPRIS ALT2 TSL 2 BASIC15.69■□□□□ 0.1
SDC1P18827 METTL26-201ENST00000301686 794 ntAPPRIS P1 TSL 2 BASIC15.69■□□□□ 0.1
SDC1P18827 METTL26-205ENST00000397666 726 ntTSL 2 BASIC15.69■□□□□ 0.1
SDC1P18827 MRPL3P1-201ENST00000400109 1033 ntBASIC15.69■□□□□ 0.1
SDC1P18827 PMS2P4-201ENST00000412466 1052 ntBASIC15.69■□□□□ 0.1
SDC1P18827 AC106791.1-202ENST00000508281 1148 ntTSL 2 BASIC15.69■□□□□ 0.1
SDC1P18827 AC091182.1-202ENST00000518765 713 ntTSL 2 BASIC15.69■□□□□ 0.1
SDC1P18827 UNC93B6-202ENST00000528242 690 ntBASIC15.69■□□□□ 0.1
SDC1P18827 CYB561D1-208ENST00000528785 1271 ntAPPRIS ALT1 TSL 5 BASIC15.69■□□□□ 0.1
SDC1P18827 AL162171.1-201ENST00000556328 718 ntTSL 3 BASIC15.69■□□□□ 0.1
SDC1P18827 CARHSP1-205ENST00000562843 843 ntTSL 2 BASIC15.69■□□□□ 0.1
SDC1P18827 TCAP-202ENST00000578283 583 ntTSL 5 BASIC15.69■□□□□ 0.1
SDC1P18827 TMEM97-205ENST00000583381 578 ntTSL 4 BASIC15.69■□□□□ 0.1
SDC1P18827 METTL23-202ENST00000586200 465 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
SDC1P18827 GMIP-204ENST00000587238 2987 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
SDC1P18827 METTL23-212ENST00000590964 1006 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
SDC1P18827 AC004597.1-201ENST00000595525 561 ntTSL 4 BASIC15.69■□□□□ 0.1
SDC1P18827 SLC26A1-205ENST00000622731 1057 ntTSL 5 BASIC15.69■□□□□ 0.1
SDC1P18827 ASAH1-254ENST00000637636 2218 ntAPPRIS ALT1 TSL 5 BASIC15.69■□□□□ 0.1
SDC1P18827 AC093627.6-201ENST00000478759 1365 ntTSL 5 BASIC15.69■□□□□ 0.1
SDC1P18827 SRSF2-205ENST00000508921 1390 ntTSL 2 BASIC15.69■□□□□ 0.1
SDC1P18827 NPM2-209ENST00000521157 1484 ntAPPRIS P2 TSL 5 BASIC15.69■□□□□ 0.1
SDC1P18827 ZFAND6-207ENST00000558494 1472 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
SDC1P18827 HPS1-202ENST00000338546 1580 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
SDC1P18827 PARVB-203ENST00000404989 1591 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
SDC1P18827 ADAMTSL4-204ENST00000369041 2908 ntTSL 5 BASIC15.69■□□□□ 0.1
SDC1P18827 KCNQ2-209ENST00000625514 2925 ntTSL 5 BASIC15.69■□□□□ 0.1
SDC1P18827 ADGRA1-202ENST00000392607 4283 ntAPPRIS P2 TSL 5 BASIC15.69■□□□□ 0.1
SDC1P18827 TIGD2-202ENST00000603357 3217 ntAPPRIS P1 TSL 4 BASIC15.69■□□□□ 0.1
SDC1P18827 SUCLA2-201ENST00000378654 2192 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
SDC1P18827 KTN1-AS1-202ENST00000412224 2185 ntTSL 2 BASIC15.69■□□□□ 0.1
SDC1P18827 ELOF1-203ENST00000586683 2154 ntTSL 2 BASIC15.69■□□□□ 0.1
SDC1P18827 DHRS7-212ENST00000611054 1321 ntTSL 5 BASIC15.68■□□□□ 0.1
SDC1P18827 MAN2A2-216ENST00000559717 6704 ntAPPRIS P1 TSL 2 BASIC15.68■□□□□ 0.1
SDC1P18827 EPS8-201ENST00000281172 4061 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
SDC1P18827 CNPY4-201ENST00000262932 1502 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
SDC1P18827 HLA-B-249ENST00000412585 1547 ntAPPRIS P1 BASIC15.68■□□□□ 0.1
SDC1P18827 AC069224.1-201ENST00000566372 1715 ntBASIC15.68■□□□□ 0.1
SDC1P18827 UCKL1-201ENST00000354216 1837 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
SDC1P18827 ATG13-216ENST00000530500 2030 ntTSL 2 BASIC15.68■□□□□ 0.1
SDC1P18827 NUDT16P1-202ENST00000499077 2208 ntTSL 2 BASIC15.68■□□□□ 0.1
SDC1P18827 SRRM2-201ENST00000301740 9353 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
SDC1P18827 TCP10-201ENST00000366827 2250 ntAPPRIS ALT2 TSL 5 BASIC15.68■□□□□ 0.1
SDC1P18827 BECN1-213ENST00000590099 2087 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
SDC1P18827 ASTN2-202ENST00000313400 4747 ntAPPRIS ALT2 TSL 5 BASIC15.68■□□□□ 0.1
SDC1P18827 CABP1-201ENST00000288616 1369 ntAPPRIS P4 TSL 1 (best) BASIC15.68■□□□□ 0.1
SDC1P18827 MRGPRD-201ENST00000309106 966 ntAPPRIS P1 BASIC15.68■□□□□ 0.1
SDC1P18827 AQP12A-201ENST00000337801 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
SDC1P18827 NNAT-202ENST00000346199 1209 ntAPPRIS ALT1 TSL 1 (best) BASIC15.68■□□□□ 0.1
SDC1P18827 HIST1H3D-201ENST00000356476 411 ntAPPRIS P1 BASIC15.68■□□□□ 0.1
SDC1P18827 MRPL9-202ENST00000368830 1296 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.1
SDC1P18827 THAP7-202ENST00000399133 1144 ntAPPRIS P1 TSL 2 BASIC15.68■□□□□ 0.1
SDC1P18827 AL354836.1-201ENST00000414042 681 ntTSL 2 BASIC15.68■□□□□ 0.1
SDC1P18827 TMEM205-202ENST00000447337 916 ntAPPRIS P1 TSL 2 BASIC15.68■□□□□ 0.1
SDC1P18827 NCAM1-AS1-202ENST00000533638 618 ntTSL 4 BASIC15.68■□□□□ 0.1
SDC1P18827 GABARAP-204ENST00000571253 837 ntTSL 2 BASIC15.68■□□□□ 0.1
SDC1P18827 GPX4-212ENST00000616066 924 ntAPPRIS ALT1 TSL 5 BASIC15.68■□□□□ 0.1
SDC1P18827 AC141586.1-201ENST00000399702 2748 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
SDC1P18827 SLC2A10-201ENST00000359271 4389 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
SDC1P18827 PIPOX-201ENST00000323372 2414 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
SDC1P18827 MFSD1-203ENST00000415822 2423 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
SDC1P18827 CCDC130-204ENST00000586600 1922 ntAPPRIS P1 TSL 5 BASIC15.68■□□□□ 0.1
SDC1P18827 BIN3-201ENST00000276416 1835 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
SDC1P18827 PPP2R5D-206ENST00000472118 2963 ntAPPRIS ALT2 TSL 5 BASIC15.68■□□□□ 0.1
SDC1P18827 LINC01979-201ENST00000576738 5271 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
SDC1P18827 GLIPR2-205ENST00000619700 1645 ntTSL 3 BASIC15.68■□□□□ 0.1
SDC1P18827 LOH12CR2-201ENST00000381800 1540 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
SDC1P18827 CACNA1A-214ENST00000614285 8410 ntAPPRIS ALT2 TSL 5 BASIC15.68■□□□□ 0.1
SDC1P18827 SLC29A1-209ENST00000427851 2171 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
SDC1P18827 NDRG1-202ENST00000414097 3755 ntAPPRIS P1 TSL 2 BASIC15.67■□□□□ 0.1
SDC1P18827 SATB1-201ENST00000338745 7810 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
SDC1P18827 PCDHA1-203ENST00000504120 5263 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 36.1 ms