Protein–RNA interactions for Protein: O15551

CLDN3, Claudin-3, humanhuman

Predictions only

Length 220 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN3O15551 TSEN15P1-201ENST00000423257 515 ntBASIC17.98■□□□□ 0.47
CLDN3O15551 LINC01143-201ENST00000449073 625 ntTSL 2 BASIC17.98■□□□□ 0.47
CLDN3O15551 RAB7A-204ENST00000483906 533 ntTSL 3 BASIC17.98■□□□□ 0.47
CLDN3O15551 SLC25A39P2-201ENST00000537614 270 ntBASIC17.98■□□□□ 0.47
CLDN3O15551 DAD1-205ENST00000543337 501 ntTSL 3 BASIC17.98■□□□□ 0.47
CLDN3O15551 AL138781.1-202ENST00000563018 775 ntTSL 3 BASIC17.98■□□□□ 0.47
CLDN3O15551 Z97055.2-201ENST00000563715 859 ntTSL 3 BASIC17.98■□□□□ 0.47
CLDN3O15551 IL11-202ENST00000585513 1201 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
CLDN3O15551 TRIM29-221ENST00000627238 510 ntTSL 5 BASIC17.98■□□□□ 0.47
CLDN3O15551 SIGLEC7-201ENST00000305628 1469 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
CLDN3O15551 PYCR2-201ENST00000343818 1689 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
CLDN3O15551 SUFU-202ENST00000369902 5001 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
CLDN3O15551 KPNA2-202ENST00000537025 2456 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
CLDN3O15551 BCAN-202ENST00000361588 2563 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
CLDN3O15551 ZC3H12A-201ENST00000373087 2684 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
CLDN3O15551 TCF3-212ENST00000588136 2658 ntAPPRIS ALT2 TSL 2 BASIC17.98■□□□□ 0.47
CLDN3O15551 ZNF514-202ENST00000411425 2755 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
CLDN3O15551 SLC19A2-202ENST00000367804 2976 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
CLDN3O15551 MMP15-201ENST00000219271 4250 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
CLDN3O15551 JADE3-204ENST00000614628 4934 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
CLDN3O15551 RAB35-201ENST00000229340 2945 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
CLDN3O15551 C10orf10-201ENST00000298295 2120 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
CLDN3O15551 FADS1-216ENST00000542506 1725 ntTSL 2 BASIC17.98■□□□□ 0.47
CLDN3O15551 GUCD1-203ENST00000404664 1606 ntTSL 2 BASIC17.98■□□□□ 0.47
CLDN3O15551 RECQL4-210ENST00000621189 3896 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
CLDN3O15551 KLF10-201ENST00000285407 3097 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
CLDN3O15551 RAN-212ENST00000543796 2661 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
CLDN3O15551 YTHDF3-215ENST00000621957 2387 ntAPPRIS ALT1 TSL 5 BASIC17.97■□□□□ 0.47
CLDN3O15551 NIPA2-201ENST00000337451 3233 ntAPPRIS P1 TSL 5 BASIC17.97■□□□□ 0.47
CLDN3O15551 ARMC6-203ENST00000392336 1866 ntTSL 2 BASIC17.97■□□□□ 0.47
CLDN3O15551 PLXDC2-202ENST00000377242 2822 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
CLDN3O15551 GRAMD1A-202ENST00000411896 2523 ntAPPRIS ALT2 TSL 2 BASIC17.97■□□□□ 0.47
CLDN3O15551 CNTNAP3-201ENST00000297668 5064 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
CLDN3O15551 CEP19-202ENST00000409690 2201 ntAPPRIS P2 TSL 1 (best) BASIC17.97■□□□□ 0.47
CLDN3O15551 FAM24B-201ENST00000368896 704 ntAPPRIS P1 TSL 2 BASIC17.97■□□□□ 0.47
CLDN3O15551 TEX30-202ENST00000376021 1038 ntTSL 2 BASIC17.97■□□□□ 0.47
CLDN3O15551 AP1S3-202ENST00000396653 589 ntTSL 4 BASIC17.97■□□□□ 0.47
CLDN3O15551 AL158071.2-201ENST00000423380 815 ntTSL 3 BASIC17.97■□□□□ 0.47
CLDN3O15551 ZNF655-216ENST00000449244 544 ntTSL 4 BASIC17.97■□□□□ 0.47
CLDN3O15551 AC007364.1-201ENST00000449714 1022 ntTSL 2 BASIC17.97■□□□□ 0.47
CLDN3O15551 NDUFAF5-203ENST00000463598 991 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
CLDN3O15551 MLF1-210ENST00000484955 1247 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
CLDN3O15551 HLA-J-203ENST00000494367 1087 ntBASIC17.97■□□□□ 0.47
CLDN3O15551 VASH2-211ENST00000517399 1068 ntAPPRIS ALT1 TSL 1 (best) BASIC17.97■□□□□ 0.47
CLDN3O15551 AC124067.2-201ENST00000521989 510 ntTSL 2 BASIC17.97■□□□□ 0.47
CLDN3O15551 AC011476.2-201ENST00000585492 1271 ntTSL 2 BASIC17.97■□□□□ 0.47
CLDN3O15551 MFSD11-207ENST00000586622 2952 ntAPPRIS P1 TSL 5 BASIC17.97■□□□□ 0.47
CLDN3O15551 AC254562.3-201ENST00000626627 631 ntTSL 5 BASIC17.97■□□□□ 0.47
CLDN3O15551 ERO1A-201ENST00000395686 5285 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
CLDN3O15551 CYMP-AS1-201ENST00000457402 2351 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
CLDN3O15551 FAM210B-201ENST00000371384 3046 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
CLDN3O15551 GRIN2C-202ENST00000347612 2929 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
CLDN3O15551 AC100830.1-201ENST00000560387 1609 ntTSL 2 BASIC17.97■□□□□ 0.47
CLDN3O15551 GRAMD1A-211ENST00000599564 2825 ntTSL 5 BASIC17.97■□□□□ 0.47
CLDN3O15551 ZFP3-201ENST00000318833 5206 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
CLDN3O15551 ACTR3-208ENST00000535589 1530 ntTSL 2 BASIC17.97■□□□□ 0.47
CLDN3O15551 LY6K-205ENST00000522591 2724 ntAPPRIS ALT2 TSL 2 BASIC17.97■□□□□ 0.47
CLDN3O15551 HAPLN3-201ENST00000359595 1980 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
CLDN3O15551 NFATC4-202ENST00000413692 5700 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
CLDN3O15551 GGT5-203ENST00000398292 2408 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
CLDN3O15551 HOXB5-201ENST00000239151 2041 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
CLDN3O15551 SART1-201ENST00000312397 3293 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
CLDN3O15551 ACE-204ENST00000428043 5120 ntTSL 2 BASIC17.96■□□□□ 0.47
CLDN3O15551 TMEM51-202ENST00000376014 1843 ntAPPRIS P1 TSL 2 BASIC17.96■□□□□ 0.47
CLDN3O15551 PTK7-202ENST00000230419 4272 ntAPPRIS P3 TSL 1 (best) BASIC17.96■□□□□ 0.47
CLDN3O15551 SLC39A8-201ENST00000356736 3144 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
CLDN3O15551 TMEM270-201ENST00000320531 854 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
CLDN3O15551 TSSC4-202ENST00000380992 992 ntAPPRIS ALT2 TSL 5 BASIC17.96■□□□□ 0.47
CLDN3O15551 IL32-205ENST00000396890 1067 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.47
CLDN3O15551 CYTH4-203ENST00000405206 636 ntTSL 4 BASIC17.96■□□□□ 0.47
CLDN3O15551 C6orf47-AS1-203ENST00000422049 673 ntTSL 2 BASIC17.96■□□□□ 0.47
CLDN3O15551 AC142381.1-201ENST00000426099 345 ntBASIC17.96■□□□□ 0.47
CLDN3O15551 LINC02558-202ENST00000436395 298 ntTSL 5 BASIC17.96■□□□□ 0.47
CLDN3O15551 METTL21AP1-201ENST00000438852 635 ntBASIC17.96■□□□□ 0.47
CLDN3O15551 RANGRF-203ENST00000439238 1140 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
CLDN3O15551 FXYD6-209ENST00000530956 579 ntAPPRIS P2 TSL 2 BASIC17.96■□□□□ 0.47
CLDN3O15551 IL32-233ENST00000552664 731 ntAPPRIS P4 TSL 3 BASIC17.96■□□□□ 0.47
CLDN3O15551 AC217774.2-201ENST00000580347 560 ntTSL 4 BASIC17.96■□□□□ 0.47
CLDN3O15551 AC090164.4-201ENST00000632451 313 ntTSL 5 BASIC17.96■□□□□ 0.47
CLDN3O15551 ADGRB2-206ENST00000398556 4879 ntAPPRIS ALT2 TSL 5 BASIC17.96■□□□□ 0.47
CLDN3O15551 FADS3-207ENST00000527697 1640 ntTSL 5 BASIC17.96■□□□□ 0.47
CLDN3O15551 AC009292.1-201ENST00000502156 1986 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
CLDN3O15551 CTCFL-215ENST00000608158 1984 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
CLDN3O15551 SEPT9-202ENST00000423034 3984 ntAPPRIS ALT1 TSL 1 (best) BASIC17.96■□□□□ 0.47
CLDN3O15551 NDUFV1-216ENST00000529927 1503 ntAPPRIS ALT1 TSL 1 (best) BASIC17.96■□□□□ 0.47
CLDN3O15551 NEK2-202ENST00000366999 2131 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
CLDN3O15551 DNAJB8-AS1-201ENST00000471626 1798 ntTSL 2 BASIC17.96■□□□□ 0.47
CLDN3O15551 PAPOLB-201ENST00000404991 4262 ntAPPRIS P1 BASIC17.96■□□□□ 0.47
CLDN3O15551 HAGH-202ENST00000397356 2984 ntAPPRIS P3 TSL 1 (best) BASIC17.96■□□□□ 0.47
CLDN3O15551 TTC24-201ENST00000368236 2005 ntAPPRIS P1 TSL 5 BASIC17.96■□□□□ 0.47
CLDN3O15551 FAM222B-211ENST00000582266 2613 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
CLDN3O15551 CASK-203ENST00000378163 4411 ntAPPRIS ALT1 TSL 5 BASIC17.96■□□□□ 0.47
CLDN3O15551 HIST1H2AC-202ENST00000377791 1654 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
CLDN3O15551 MYCL-203ENST00000397332 3256 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.46
CLDN3O15551 CACNB3-203ENST00000540990 1814 ntTSL 2 BASIC17.95■□□□□ 0.46
CLDN3O15551 ZIC5-201ENST00000267294 4639 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CLDN3O15551 CNPPD1-201ENST00000360507 2060 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CLDN3O15551 MAP4K3-202ENST00000341681 4271 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
CLDN3O15551 PHF1-202ENST00000374516 2330 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CLDN3O15551 ZNF18-204ENST00000580306 2330 ntAPPRIS P3 TSL 2 BASIC17.95■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 69.2 ms