Protein–RNA interactions for Protein: O00635

TRIM38, E3 ubiquitin-protein ligase TRIM38, humanhuman

Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM38O00635 ELK1-203ENST00000376983 2258 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
TRIM38O00635 BX276092.7-202ENST00000422194 696 ntTSL 3 BASIC16.61■□□□□ 0.25
TRIM38O00635 AC005237.2-201ENST00000434368 219 ntBASIC16.61■□□□□ 0.25
TRIM38O00635 FAM86GP-201ENST00000448322 971 ntBASIC16.61■□□□□ 0.25
TRIM38O00635 FXYD6-209ENST00000530956 579 ntAPPRIS P2 TSL 2 BASIC16.61■□□□□ 0.25
TRIM38O00635 AC217774.2-201ENST00000580347 560 ntTSL 4 BASIC16.61■□□□□ 0.25
TRIM38O00635 MARCH2-206ENST00000601283 747 ntTSL 3 BASIC16.61■□□□□ 0.25
TRIM38O00635 AC004832.1-201ENST00000610936 1005 ntTSL 5 BASIC16.61■□□□□ 0.25
TRIM38O00635 LINC00623-204ENST00000617702 746 ntTSL 5 BASIC16.61■□□□□ 0.25
TRIM38O00635 AC009093.7-201ENST00000623853 1223 ntBASIC16.61■□□□□ 0.25
TRIM38O00635 AL645728.2-201ENST00000641974 660 ntBASIC16.61■□□□□ 0.25
TRIM38O00635 YTHDF3-212ENST00000621413 2370 ntTSL 5 BASIC16.61■□□□□ 0.25
TRIM38O00635 SLC9A2-201ENST00000233969 5410 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
TRIM38O00635 PTPRC-206ENST00000413409 1338 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
TRIM38O00635 ARHGEF40-201ENST00000298694 5919 ntAPPRIS P1 TSL 2 BASIC16.61■□□□□ 0.25
TRIM38O00635 RUSC1-209ENST00000471876 1749 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
TRIM38O00635 SIRT6-214ENST00000601488 1361 ntTSL 3 BASIC16.61■□□□□ 0.25
TRIM38O00635 MYBPH-202ENST00000621380 1772 ntTSL 5 BASIC16.61■□□□□ 0.25
TRIM38O00635 CDKN1A-201ENST00000244741 2180 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
TRIM38O00635 SDCBP-201ENST00000260130 2167 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
TRIM38O00635 DOLPP1-202ENST00000372546 2177 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
TRIM38O00635 FAM86DP-207ENST00000497543 2152 ntTSL 2 BASIC16.61■□□□□ 0.25
TRIM38O00635 MC1R-204ENST00000639847 2567 ntAPPRIS P1 TSL 5 BASIC16.61■□□□□ 0.25
TRIM38O00635 PKN3-201ENST00000291906 3375 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
TRIM38O00635 SFXN1-201ENST00000321442 4231 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
TRIM38O00635 ABCF3-203ENST00000429586 2624 ntAPPRIS P2 TSL 1 (best) BASIC16.61■□□□□ 0.25
TRIM38O00635 AC110813.1-201ENST00000507934 2209 ntTSL 2 BASIC16.61■□□□□ 0.25
TRIM38O00635 MIOS-202ENST00000405785 3095 ntAPPRIS P1 TSL 5 BASIC16.61■□□□□ 0.25
TRIM38O00635 AC007950.2-201ENST00000615045 2347 ntBASIC16.61■□□□□ 0.25
TRIM38O00635 XKR7-201ENST00000562532 7844 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
TRIM38O00635 CDC42EP4-201ENST00000335793 3272 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
TRIM38O00635 LRRC59-201ENST00000225972 2910 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
TRIM38O00635 MFF-201ENST00000304593 2004 ntAPPRIS P1 TSL 2 BASIC16.6■□□□□ 0.25
TRIM38O00635 PKLR-202ENST00000392414 2479 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
TRIM38O00635 AC226118.1-201ENST00000515213 2146 ntTSL 2 BASIC16.6■□□□□ 0.25
TRIM38O00635 GTDC1-219ENST00000542155 2677 ntAPPRIS P1 TSL 2 BASIC16.6■□□□□ 0.25
TRIM38O00635 NUDT16P1-202ENST00000499077 2208 ntTSL 2 BASIC16.6■□□□□ 0.25
TRIM38O00635 STX10-201ENST00000242770 1099 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
TRIM38O00635 SIVA1-202ENST00000347067 550 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
TRIM38O00635 SNHG11-201ENST00000359074 1031 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
TRIM38O00635 FNDC11-202ENST00000370098 1112 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
TRIM38O00635 UGGT2-202ENST00000376714 1233 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
TRIM38O00635 TSSC4-202ENST00000380992 992 ntAPPRIS ALT2 TSL 5 BASIC16.6■□□□□ 0.25
TRIM38O00635 HNRNPFP1-201ENST00000391730 1133 ntBASIC16.6■□□□□ 0.25
TRIM38O00635 LINC00404-201ENST00000418660 428 ntTSL 2 BASIC16.6■□□□□ 0.25
TRIM38O00635 RNF212-203ENST00000433731 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
TRIM38O00635 AL391845.1-202ENST00000449154 437 ntTSL 3 BASIC16.6■□□□□ 0.25
TRIM38O00635 SPDYE11-202ENST00000450699 704 ntBASIC16.6■□□□□ 0.25
TRIM38O00635 SLBP-205ENST00000488267 987 ntTSL 2 BASIC16.6■□□□□ 0.25
TRIM38O00635 SNCA-209ENST00000506244 570 ntAPPRIS P1 TSL 2 BASIC16.6■□□□□ 0.25
TRIM38O00635 SERF1A-207ENST00000512649 846 ntTSL 2 BASIC16.6■□□□□ 0.25
TRIM38O00635 FAM86C2P-203ENST00000528684 1004 ntBASIC16.6■□□□□ 0.25
TRIM38O00635 AKR1E2-212ENST00000532248 844 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
TRIM38O00635 JPH4-203ENST00000544177 1124 ntTSL 2 BASIC16.6■□□□□ 0.25
TRIM38O00635 SPDYE9P-201ENST00000570642 692 ntBASIC16.6■□□□□ 0.25
TRIM38O00635 SPDYE10P-202ENST00000612005 668 ntBASIC16.6■□□□□ 0.25
TRIM38O00635 SPDYE8P-202ENST00000612377 668 ntBASIC16.6■□□□□ 0.25
TRIM38O00635 BSG-214ENST00000614867 960 ntTSL 3 BASIC16.6■□□□□ 0.25
TRIM38O00635 UGGT2-212ENST00000621375 1004 ntTSL 5 BASIC16.6■□□□□ 0.25
TRIM38O00635 UGGT2-213ENST00000638479 1010 ntTSL 5 BASIC16.6■□□□□ 0.25
TRIM38O00635 TLE2-202ENST00000426948 2406 ntTSL 5 BASIC16.6■□□□□ 0.25
TRIM38O00635 CYP11A1-201ENST00000268053 1934 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
TRIM38O00635 THAP3-201ENST00000054650 1366 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
TRIM38O00635 YAP1-211ENST00000629586 1365 ntTSL 5 BASIC16.6■□□□□ 0.25
TRIM38O00635 CHFR-203ENST00000432561 2648 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
TRIM38O00635 VCAN-204ENST00000502527 2087 ntAPPRIS ALT1 TSL 1 (best) BASIC16.6■□□□□ 0.25
TRIM38O00635 PDHX-203ENST00000448838 2653 ntTSL 5 BASIC16.6■□□□□ 0.25
TRIM38O00635 PSMD5-203ENST00000373904 1538 ntTSL 2 BASIC16.6■□□□□ 0.25
TRIM38O00635 ZCCHC3-201ENST00000500893 3354 ntAPPRIS P1 BASIC16.6■□□□□ 0.25
TRIM38O00635 NR2C1-219ENST00000622476 1561 ntTSL 5 BASIC16.6■□□□□ 0.25
TRIM38O00635 SLC4A3-204ENST00000373760 4134 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
TRIM38O00635 NEIL2-203ENST00000436750 2226 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
TRIM38O00635 LTBP4-205ENST00000396819 4764 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
TRIM38O00635 BCAR1-206ENST00000535626 2894 ntTSL 2 BASIC16.6■□□□□ 0.25
TRIM38O00635 AIFM3-201ENST00000399163 2309 ntAPPRIS ALT1 TSL 1 (best) BASIC16.59■□□□□ 0.25
TRIM38O00635 UPK3B-202ENST00000334348 2373 ntAPPRIS ALT2 TSL 2 BASIC16.59■□□□□ 0.25
TRIM38O00635 AKT1-214ENST00000555528 3066 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
TRIM38O00635 RGS12-203ENST00000344733 5469 ntAPPRIS P4 TSL 1 (best) BASIC16.59■□□□□ 0.25
TRIM38O00635 UGCG-201ENST00000374279 4007 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
TRIM38O00635 PPP1CB-202ENST00000358506 4771 ntAPPRIS P1 TSL 5 BASIC16.59■□□□□ 0.25
TRIM38O00635 ACIN1-205ENST00000457657 4815 ntAPPRIS ALT2 TSL 5 BASIC16.59■□□□□ 0.25
TRIM38O00635 AC079328.2-201ENST00000561241 3354 ntBASIC16.59■□□□□ 0.25
TRIM38O00635 NAT9-210ENST00000580301 1860 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
TRIM38O00635 FEZF1-AS1-202ENST00000428449 2653 ntTSL 2 BASIC16.59■□□□□ 0.25
TRIM38O00635 ACTG1-208ENST00000575087 2001 ntAPPRIS P1 TSL 5 BASIC16.59■□□□□ 0.25
TRIM38O00635 NECAB2-203ENST00000565691 2064 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
TRIM38O00635 MRNIP-201ENST00000292586 1238 ntAPPRIS P4 TSL 1 (best) BASIC16.59■□□□□ 0.25
TRIM38O00635 CGB3-201ENST00000357383 877 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
TRIM38O00635 CGB2-201ENST00000359342 627 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
TRIM38O00635 RNASEH1-AS1-202ENST00000438436 1218 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
TRIM38O00635 MEIS1-AS2-201ENST00000439433 690 ntTSL 2 BASIC16.59■□□□□ 0.25
TRIM38O00635 CTDSP1-204ENST00000443891 1109 ntTSL 3 BASIC16.59■□□□□ 0.25
TRIM38O00635 LINC01143-201ENST00000449073 625 ntTSL 2 BASIC16.59■□□□□ 0.25
TRIM38O00635 IL32-212ENST00000526464 1198 ntAPPRIS P4 TSL 2 BASIC16.59■□□□□ 0.25
TRIM38O00635 IL32-217ENST00000530538 674 ntAPPRIS P4 TSL 3 BASIC16.59■□□□□ 0.25
TRIM38O00635 DUSP6-204ENST00000547291 1074 ntTSL 2 BASIC16.59■□□□□ 0.25
TRIM38O00635 AL138781.1-202ENST00000563018 775 ntTSL 3 BASIC16.59■□□□□ 0.25
TRIM38O00635 INO80C-206ENST00000586489 594 ntTSL 3 BASIC16.59■□□□□ 0.25
TRIM38O00635 CU104787.1-201ENST00000624155 288 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
TRIM38O00635 Z92544.3-201ENST00000624747 417 ntBASIC16.59■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 42.7 ms