Protein–RNA interactions for Protein: Q9UIU6

SIX4, Homeobox protein SIX4, humanhuman

Predictions only

Length 781 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX4Q9UIU6 AL021453.1-201ENST00000333487 2989 ntTSL 2 BASIC17.54■□□□□ 0.4
SIX4Q9UIU6 NPM1-201ENST00000296930 1758 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
SIX4Q9UIU6 CHAD-203ENST00000508540 1789 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
SIX4Q9UIU6 HNF1A-216ENST00000617366 2473 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
SIX4Q9UIU6 AJ239322.1-201ENST00000419362 2209 ntTSL 2 BASIC17.54■□□□□ 0.4
SIX4Q9UIU6 MYO3A-206ENST00000543632 2203 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
SIX4Q9UIU6 SLC17A7-204ENST00000600601 2237 ntTSL 2 BASIC17.54■□□□□ 0.4
SIX4Q9UIU6 MAFB-201ENST00000373313 3393 ntAPPRIS P1 BASIC17.54■□□□□ 0.4
SIX4Q9UIU6 MRPL28-202ENST00000389675 865 ntAPPRIS P1 TSL 3 BASIC17.54■□□□□ 0.4
SIX4Q9UIU6 MIPEPP3-202ENST00000424756 347 ntTSL 3 BASIC17.54■□□□□ 0.4
SIX4Q9UIU6 ZIC4-214ENST00000491672 925 ntTSL 4 BASIC17.54■□□□□ 0.4
SIX4Q9UIU6 CSRP2-202ENST00000546966 754 ntAPPRIS P1 TSL 3 BASIC17.54■□□□□ 0.4
SIX4Q9UIU6 AL355974.2-201ENST00000614099 556 ntTSL 4 BASIC17.54■□□□□ 0.4
SIX4Q9UIU6 AL355974.2-202ENST00000617298 936 ntTSL 3 BASIC17.54■□□□□ 0.4
SIX4Q9UIU6 MIR6080-201ENST00000617359 66 ntBASIC17.54■□□□□ 0.4
SIX4Q9UIU6 LINC00200-201ENST00000425630 2434 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
SIX4Q9UIU6 GAREM2-202ENST00000407684 5138 ntTSL 2 BASIC17.54■□□□□ 0.4
SIX4Q9UIU6 ALDOA-226ENST00000569798 1499 ntTSL 2 BASIC17.54■□□□□ 0.4
SIX4Q9UIU6 ABCC5-203ENST00000382494 1923 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
SIX4Q9UIU6 BX088651.4-201ENST00000435586 2579 ntTSL 2 BASIC17.54■□□□□ 0.4
SIX4Q9UIU6 SHISA5-219ENST00000612611 1677 ntTSL 5 BASIC17.54■□□□□ 0.4
SIX4Q9UIU6 TRIM39-205ENST00000396551 3249 ntAPPRIS ALT2 TSL 5 BASIC17.54■□□□□ 0.4
SIX4Q9UIU6 RIMS4-201ENST00000372851 5203 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
SIX4Q9UIU6 SCARB2-201ENST00000264896 4792 ntAPPRIS P2 TSL 1 (best) BASIC17.54■□□□□ 0.4
SIX4Q9UIU6 TMEM110-201ENST00000355083 4769 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
SIX4Q9UIU6 SLC2A6-201ENST00000371897 2301 ntTSL 2 BASIC17.54■□□□□ 0.4
SIX4Q9UIU6 AL118508.1-201ENST00000613502 2345 ntBASIC17.54■□□□□ 0.4
SIX4Q9UIU6 AASDHPPT-201ENST00000278618 2955 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
SIX4Q9UIU6 FBXO18-203ENST00000397269 3640 ntTSL 5 BASIC17.54■□□□□ 0.4
SIX4Q9UIU6 HEPN1-201ENST00000408930 1434 ntAPPRIS P1 BASIC17.54■□□□□ 0.4
SIX4Q9UIU6 PDE4C-201ENST00000262805 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
SIX4Q9UIU6 CHN1-205ENST00000409900 2447 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
SIX4Q9UIU6 SYNM-204ENST00000594047 6407 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
SIX4Q9UIU6 CHFR-203ENST00000432561 2648 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
SIX4Q9UIU6 GTPBP8-202ENST00000383677 1787 ntTSL 3 BASIC17.53■□□□□ 0.4
SIX4Q9UIU6 EIF5-201ENST00000216554 5945 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
SIX4Q9UIU6 TRMT44-201ENST00000389737 2799 ntAPPRIS P2 TSL 5 BASIC17.53■□□□□ 0.4
SIX4Q9UIU6 SLC1A6-208ENST00000598504 2987 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
SIX4Q9UIU6 OSGIN1-203ENST00000393306 1940 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
SIX4Q9UIU6 GAL3ST1-203ENST00000402321 1908 ntAPPRIS P1 TSL 2 BASIC17.53■□□□□ 0.4
SIX4Q9UIU6 DAP-201ENST00000230895 2339 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
SIX4Q9UIU6 STK10-201ENST00000176763 6060 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
SIX4Q9UIU6 RBPJL-201ENST00000343694 2489 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
SIX4Q9UIU6 PRDM5-202ENST00000394435 2492 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
SIX4Q9UIU6 CMKLR1-204ENST00000550402 1893 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
SIX4Q9UIU6 KRT35-202ENST00000393989 1670 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
SIX4Q9UIU6 AC090286.1-201ENST00000354432 1489 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
SIX4Q9UIU6 TNRC18-202ENST00000399434 1459 ntTSL 2 BASIC17.53■□□□□ 0.4
SIX4Q9UIU6 TSPAN12-202ENST00000415871 1495 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
SIX4Q9UIU6 TUBB6-211ENST00000591208 1492 ntTSL 5 BASIC17.53■□□□□ 0.4
SIX4Q9UIU6 HIST2H3D-201ENST00000331491 411 ntAPPRIS P1 BASIC17.53■□□□□ 0.4
SIX4Q9UIU6 DDT-201ENST00000350608 671 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
SIX4Q9UIU6 SNHG11-201ENST00000359074 1031 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
SIX4Q9UIU6 HIST2H3PS2-201ENST00000392948 411 ntAPPRIS P1 BASIC17.53■□□□□ 0.4
SIX4Q9UIU6 BANF1P1-201ENST00000553684 263 ntBASIC17.53■□□□□ 0.4
SIX4Q9UIU6 AC051619.7-201ENST00000568314 623 ntBASIC17.53■□□□□ 0.4
SIX4Q9UIU6 AC027796.2-201ENST00000575326 344 ntBASIC17.53■□□□□ 0.4
SIX4Q9UIU6 WNT1-202ENST00000613114 1278 ntTSL 5 BASIC17.53■□□□□ 0.4
SIX4Q9UIU6 GRIFIN-202ENST00000614228 461 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
SIX4Q9UIU6 LAMTOR5-208ENST00000614544 846 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
SIX4Q9UIU6 SUSD2-201ENST00000358321 3404 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
SIX4Q9UIU6 WT1-209ENST00000530998 2421 ntTSL 2 BASIC17.53■□□□□ 0.4
SIX4Q9UIU6 P4HA2-201ENST00000166534 2230 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
SIX4Q9UIU6 FARP1-242ENST00000627049 5103 ntTSL 5 BASIC17.53■□□□□ 0.4
SIX4Q9UIU6 RCOR3-204ENST00000452621 1827 ntTSL 2 BASIC17.53■□□□□ 0.4
SIX4Q9UIU6 FAM184A-201ENST00000338891 4141 ntAPPRIS P4 TSL 1 (best) BASIC17.53■□□□□ 0.4
SIX4Q9UIU6 CD14-202ENST00000401743 1648 ntAPPRIS P1 TSL 3 BASIC17.53■□□□□ 0.4
SIX4Q9UIU6 MIR155HG-201ENST00000456917 1600 ntTSL 5 BASIC17.53■□□□□ 0.4
SIX4Q9UIU6 ESR2-206ENST00000553796 1634 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
SIX4Q9UIU6 TPD52L2-209ENST00000611972 2197 ntTSL 3 BASIC17.53■□□□□ 0.4
SIX4Q9UIU6 CLMAT3-201ENST00000510576 1973 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
SIX4Q9UIU6 TRIM11-201ENST00000284551 2715 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
SIX4Q9UIU6 TCF3-212ENST00000588136 2658 ntAPPRIS ALT2 TSL 2 BASIC17.53■□□□□ 0.4
SIX4Q9UIU6 MAP3K6-202ENST00000374040 4309 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
SIX4Q9UIU6 OPN5-204ENST00000489301 1931 ntAPPRIS ALT2 TSL 5 BASIC17.53■□□□□ 0.4
SIX4Q9UIU6 STKLD1-201ENST00000371957 2825 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
SIX4Q9UIU6 TRABD-202ENST00000380909 2272 ntAPPRIS P3 TSL 5 BASIC17.52■□□□□ 0.4
SIX4Q9UIU6 BX276092.9-202ENST00000636096 1722 ntAPPRIS P5 TSL 5 BASIC17.52■□□□□ 0.4
SIX4Q9UIU6 SPAG6-203ENST00000376624 2605 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
SIX4Q9UIU6 TACC3-201ENST00000313288 2781 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
SIX4Q9UIU6 TBC1D28-201ENST00000345096 2789 ntAPPRIS P1 TSL 2 BASIC17.52■□□□□ 0.4
SIX4Q9UIU6 C2orf48-201ENST00000381786 1897 ntTSL 2 BASIC17.52■□□□□ 0.4
SIX4Q9UIU6 SP100-204ENST00000409341 1898 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
SIX4Q9UIU6 MANSC1-201ENST00000396349 2220 ntTSL 2 BASIC17.52■□□□□ 0.4
SIX4Q9UIU6 DUOXA1-202ENST00000430224 1317 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
SIX4Q9UIU6 CCDC181-206ENST00000491570 1652 ntTSL 2 BASIC17.52■□□□□ 0.4
SIX4Q9UIU6 PDLIM1-201ENST00000329399 1452 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
SIX4Q9UIU6 GHDC-202ENST00000414034 2496 ntTSL 2 BASIC17.52■□□□□ 0.4
SIX4Q9UIU6 RPL21-203ENST00000319826 806 ntAPPRIS P1 TSL 2 BASIC17.52■□□□□ 0.4
SIX4Q9UIU6 TAS2R41-201ENST00000408916 924 ntAPPRIS P1 BASIC17.52■□□□□ 0.4
SIX4Q9UIU6 AC018685.2-201ENST00000414065 547 ntTSL 4 BASIC17.52■□□□□ 0.4
SIX4Q9UIU6 AC078942.1-201ENST00000448698 589 ntTSL 4 BASIC17.52■□□□□ 0.4
SIX4Q9UIU6 PPP6R2P1-201ENST00000450880 1275 ntBASIC17.52■□□□□ 0.4
SIX4Q9UIU6 AC012173.1-201ENST00000567942 430 ntTSL 3 BASIC17.52■□□□□ 0.4
SIX4Q9UIU6 LINC00473-203ENST00000581850 929 ntTSL 3 BASIC17.52■□□□□ 0.4
SIX4Q9UIU6 AC005306.1-201ENST00000587498 661 ntTSL 3 BASIC17.52■□□□□ 0.4
SIX4Q9UIU6 C18orf21-207ENST00000610527 1059 ntTSL 2 BASIC17.52■□□□□ 0.4
SIX4Q9UIU6 C18orf21-208ENST00000618334 856 ntTSL 3 BASIC17.52■□□□□ 0.4
SIX4Q9UIU6 GAK-222ENST00000618573 1248 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
SIX4Q9UIU6 ZFYVE28-208ENST00000511071 3273 ntAPPRIS ALT2 TSL 5 BASIC17.52■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 36 ms