Protein–RNA interactions for Protein: Q99715

COL12A1, Collagen alpha-1(XII) chain, humanhuman

Predictions only

Length 3,063 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1Q99715 AP006547.1-201ENST00000563435 692 ntBASIC14.17□□□□□ -0.14
COL12A1Q99715 AC011474.2-201ENST00000579268 543 ntTSL 3 BASIC14.17□□□□□ -0.14
COL12A1Q99715 CALM3-212ENST00000599839 1355 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
COL12A1Q99715 CCDC120-206ENST00000603986 2379 ntAPPRIS ALT2 TSL 2 BASIC14.17□□□□□ -0.14
COL12A1Q99715 TUBB3-215ENST00000625617 570 ntTSL 4 BASIC14.17□□□□□ -0.14
COL12A1Q99715 AC105277.1-203ENST00000635492 1293 ntTSL 5 BASIC14.17□□□□□ -0.14
COL12A1Q99715 ACY1-212ENST00000635797 1294 ntTSL 5 BASIC14.17□□□□□ -0.14
COL12A1Q99715 BBS7-204ENST00000506636 2570 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
COL12A1Q99715 CCDC130-204ENST00000586600 1922 ntAPPRIS P1 TSL 5 BASIC14.17□□□□□ -0.14
COL12A1Q99715 TXNDC2-201ENST00000306084 1873 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
COL12A1Q99715 SLC25A3-217ENST00000552981 1351 ntAPPRIS ALT1 TSL 1 (best) BASIC14.16□□□□□ -0.14
COL12A1Q99715 RCAN3-205ENST00000436717 2574 ntTSL 3 BASIC14.16□□□□□ -0.14
COL12A1Q99715 NFYC-202ENST00000372651 1202 ntAPPRIS P3 TSL 5 BASIC14.16□□□□□ -0.14
COL12A1Q99715 AIMP2-202ENST00000395236 860 ntTSL 2 BASIC14.16□□□□□ -0.14
COL12A1Q99715 ATP5D-202ENST00000395633 704 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
COL12A1Q99715 HLA-DQB2-229ENST00000411527 1059 ntBASIC14.16□□□□□ -0.14
COL12A1Q99715 RN7SL818P-201ENST00000485099 259 ntBASIC14.16□□□□□ -0.14
COL12A1Q99715 AC136475.2-201ENST00000526612 392 ntTSL 3 BASIC14.16□□□□□ -0.14
COL12A1Q99715 AC100778.2-201ENST00000580150 483 ntTSL 5 BASIC14.16□□□□□ -0.14
COL12A1Q99715 RN7SL725P-201ENST00000606439 259 ntBASIC14.16□□□□□ -0.14
COL12A1Q99715 UBQLN4-201ENST00000368309 3576 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
COL12A1Q99715 TNFSF11-203ENST00000398795 2199 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
COL12A1Q99715 NDUFS2-201ENST00000367993 2042 ntAPPRIS P3 TSL 1 (best) BASIC14.16□□□□□ -0.14
COL12A1Q99715 STK32C-204ENST00000368622 2010 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
COL12A1Q99715 POLR1D-220ENST00000637071 1943 ntTSL 5 BASIC14.16□□□□□ -0.14
COL12A1Q99715 ADAMTS9-202ENST00000459780 2871 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
COL12A1Q99715 AL136982.4-201ENST00000437689 1740 ntBASIC14.16□□□□□ -0.14
COL12A1Q99715 UBAP1-203ENST00000379186 2524 ntTSL 5 BASIC14.16□□□□□ -0.14
COL12A1Q99715 RFC5-204ENST00000454402 1655 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
COL12A1Q99715 PIGX-202ENST00000392391 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
COL12A1Q99715 FOXD4L4-201ENST00000377413 2230 ntAPPRIS P1 BASIC14.16□□□□□ -0.14
COL12A1Q99715 FAHD2B-202ENST00000414820 1388 ntAPPRIS P1 TSL 5 BASIC14.16□□□□□ -0.14
COL12A1Q99715 NTF3-202ENST00000423158 1336 ntAPPRIS ALT1 TSL 1 (best) BASIC14.16□□□□□ -0.14
COL12A1Q99715 FAM169B-201ENST00000332908 579 ntAPPRIS P1 TSL 5 BASIC14.16□□□□□ -0.14
COL12A1Q99715 EIF3K-202ENST00000538434 966 ntTSL 2 BASIC14.16□□□□□ -0.14
COL12A1Q99715 HADH-212ENST00000638621 741 ntTSL 5 BASIC14.16□□□□□ -0.14
COL12A1Q99715 CITED2-201ENST00000367651 2354 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
COL12A1Q99715 GGT6-203ENST00000573591 1730 ntTSL 4 BASIC14.16□□□□□ -0.14
COL12A1Q99715 STK40-202ENST00000373129 3846 ntAPPRIS P3 TSL 1 (best) BASIC14.16□□□□□ -0.14
COL12A1Q99715 ACTRT3-201ENST00000330368 2005 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
COL12A1Q99715 SLC39A3-202ENST00000455372 2940 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
COL12A1Q99715 KIFC3-203ENST00000445690 3379 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
COL12A1Q99715 MCOLN2-201ENST00000284027 1729 ntAPPRIS P1 TSL 5 BASIC14.16□□□□□ -0.14
COL12A1Q99715 KRBOX1-AS1-201ENST00000447834 2134 ntTSL 2 BASIC14.16□□□□□ -0.14
COL12A1Q99715 AC009686.1-201ENST00000522494 364 ntTSL 3 BASIC14.16□□□□□ -0.14
COL12A1Q99715 MNT-208ENST00000575394 606 ntTSL 4 BASIC14.16□□□□□ -0.14
COL12A1Q99715 NAA38-207ENST00000576861 556 ntTSL 3 BASIC14.16□□□□□ -0.14
COL12A1Q99715 AC005785.1-202ENST00000597164 237 ntTSL 3 BASIC14.16□□□□□ -0.14
COL12A1Q99715 SRD5A3-AS1-211ENST00000599135 737 ntTSL 5 BASIC14.16□□□□□ -0.14
COL12A1Q99715 TLDC2-203ENST00000602922 1179 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
COL12A1Q99715 AL445288.1-201ENST00000610846 654 ntTSL 4 BASIC14.16□□□□□ -0.14
COL12A1Q99715 CRTC3-201ENST00000268184 2537 ntAPPRIS P3 TSL 1 (best) BASIC14.16□□□□□ -0.14
COL12A1Q99715 TRMO-203ENST00000375119 1647 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
COL12A1Q99715 LMLN-204ENST00000420910 2423 ntAPPRIS P2 TSL 1 (best) BASIC14.16□□□□□ -0.14
COL12A1Q99715 ZNF213-206ENST00000574902 3208 ntAPPRIS P1 TSL 5 BASIC14.15□□□□□ -0.14
COL12A1Q99715 FBXL20-202ENST00000394294 2309 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
COL12A1Q99715 SQSTM1-202ENST00000389805 2986 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
COL12A1Q99715 FDPS-201ENST00000356657 1478 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.14
COL12A1Q99715 GXYLT2-201ENST00000389617 3260 ntAPPRIS P1 TSL 5 BASIC14.15□□□□□ -0.14
COL12A1Q99715 PPP4R3A-208ENST00000555462 3236 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
COL12A1Q99715 ASAH1-231ENST00000636577 2129 ntTSL 5 BASIC14.15□□□□□ -0.14
COL12A1Q99715 PRSS35-201ENST00000369700 2440 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
COL12A1Q99715 ABHD2-207ENST00000565973 2347 ntAPPRIS P1 TSL 5 BASIC14.15□□□□□ -0.14
COL12A1Q99715 CHST10-203ENST00000409701 1338 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
COL12A1Q99715 DNASE1L2-204ENST00000567494 1301 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
COL12A1Q99715 B4GALNT2-201ENST00000300404 1906 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.14
COL12A1Q99715 FIBIN-201ENST00000318627 1938 ntAPPRIS P1 BASIC14.15□□□□□ -0.14
COL12A1Q99715 NPPC-201ENST00000295440 500 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
COL12A1Q99715 UBL4A-201ENST00000369653 711 ntTSL 3 BASIC14.15□□□□□ -0.14
COL12A1Q99715 LYPLA2-202ENST00000374502 1072 ntTSL 2 BASIC14.15□□□□□ -0.14
COL12A1Q99715 TCERG1L-AS1-201ENST00000436942 472 ntTSL 2 BASIC14.15□□□□□ -0.14
COL12A1Q99715 SSBP1-214ENST00000498107 636 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
COL12A1Q99715 IGHV3OR16-9-202ENST00000558425 288 ntAPPRIS ALT2 BASIC14.15□□□□□ -0.14
COL12A1Q99715 SHBG-212ENST00000575314 1146 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
COL12A1Q99715 TMEM205-216ENST00000593256 792 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
COL12A1Q99715 ANO1-202ENST00000355303 4790 ntAPPRIS P2 TSL 1 (best) BASIC14.15□□□□□ -0.14
COL12A1Q99715 DUSP14-204ENST00000613659 1559 ntAPPRIS P1 TSL 2 BASIC14.15□□□□□ -0.14
COL12A1Q99715 NRBP2-202ENST00000442628 3587 ntAPPRIS P1 TSL 2 BASIC14.15□□□□□ -0.14
COL12A1Q99715 DARS-201ENST00000264161 2361 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
COL12A1Q99715 MZF1-203ENST00000594234 2385 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
COL12A1Q99715 WLS-205ENST00000370976 2332 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
COL12A1Q99715 LIPG-203ENST00000577628 2323 ntTSL 2 BASIC14.15□□□□□ -0.14
COL12A1Q99715 RIC8A-208ENST00000527696 2565 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
COL12A1Q99715 NMD3-202ENST00000460469 3061 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
COL12A1Q99715 CD14-202ENST00000401743 1648 ntAPPRIS P1 TSL 3 BASIC14.15□□□□□ -0.14
COL12A1Q99715 ATP6AP2-233ENST00000638153 1303 ntAPPRIS ALT2 TSL 5 BASIC14.15□□□□□ -0.14
COL12A1Q99715 WRAP53-203ENST00000431639 1818 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
COL12A1Q99715 WRAP53-204ENST00000457584 1828 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
COL12A1Q99715 MEN1-202ENST00000315422 3148 ntAPPRIS ALT1 TSL 5 BASIC14.15□□□□□ -0.14
COL12A1Q99715 TEX29-201ENST00000283547 709 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
COL12A1Q99715 H1FOO-201ENST00000324382 1067 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
COL12A1Q99715 AC018467.1-201ENST00000421581 717 ntTSL 5 BASIC14.15□□□□□ -0.14
COL12A1Q99715 RBM4B-202ENST00000524637 867 ntTSL 5 BASIC14.15□□□□□ -0.14
COL12A1Q99715 KRT90P-201ENST00000549264 1064 ntBASIC14.15□□□□□ -0.14
COL12A1Q99715 AC036164.1-201ENST00000570544 333 ntBASIC14.15□□□□□ -0.14
COL12A1Q99715 TNXB-204ENST00000479795 2742 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
COL12A1Q99715 SLC39A14-201ENST00000240095 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
COL12A1Q99715 MAGEA4-205ENST00000393920 1721 ntAPPRIS P1 TSL 2 BASIC14.15□□□□□ -0.14
COL12A1Q99715 BPGM-203ENST00000418040 1870 ntAPPRIS P1 TSL 5 BASIC14.15□□□□□ -0.14
COL12A1Q99715 ATP6V1D-201ENST00000216442 1845 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Retrieved 100 of 98,524 protein–RNA pairs in 43.4 ms