Protein–RNA interactions for Protein: Q99626

CDX2, Homeobox protein CDX-2, humanhuman

Predicted RBP Predictions only

Length 313 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX2Q99626 SNED1-202ENST00000342631 1930 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
CDX2Q99626 RMND5A-201ENST00000283632 6301 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
CDX2Q99626 NPNT-203ENST00000427316 2481 ntAPPRIS ALT2 TSL 2 BASIC16.93■□□□□ 0.3
CDX2Q99626 PCDHA1-202ENST00000394633 2204 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
CDX2Q99626 SEMA3B-209ENST00000456560 2221 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
CDX2Q99626 NFS1-202ENST00000374085 2645 ntTSL 2 BASIC16.93■□□□□ 0.3
CDX2Q99626 PGBD5-202ENST00000525115 1569 ntTSL 2 BASIC16.93■□□□□ 0.3
CDX2Q99626 SENP6-202ENST00000370010 4644 ntAPPRIS P3 TSL 1 (best) BASIC16.93■□□□□ 0.3
CDX2Q99626 PHYH-202ENST00000396913 1732 ntTSL 5 BASIC16.93■□□□□ 0.3
CDX2Q99626 ACOX3-203ENST00000503233 2253 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
CDX2Q99626 TBKBP1-204ENST00000622396 2010 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
CDX2Q99626 INAVA-202ENST00000413687 2197 ntAPPRIS P2 TSL 2 BASIC16.92■□□□□ 0.3
CDX2Q99626 POC1A-203ENST00000474012 1760 ntAPPRIS ALT2 TSL 2 BASIC16.92■□□□□ 0.3
CDX2Q99626 CDHR5-201ENST00000349570 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
CDX2Q99626 FIGNL2-201ENST00000564840 4693 ntAPPRIS P1 TSL 5 BASIC16.92■□□□□ 0.3
CDX2Q99626 MYOZ1-201ENST00000359322 1541 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
CDX2Q99626 QRFP-202ENST00000623824 1658 ntAPPRIS P1 TSL 3 BASIC16.92■□□□□ 0.3
CDX2Q99626 PPP1R7-201ENST00000234038 2386 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
CDX2Q99626 FAM72B-202ENST00000369390 2396 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
CDX2Q99626 RGS11-204ENST00000397770 2390 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
CDX2Q99626 MARK1-202ENST00000366918 5169 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
CDX2Q99626 BST2-201ENST00000252593 1019 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
CDX2Q99626 ANK1-203ENST00000314214 1185 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
CDX2Q99626 KLK11-201ENST00000319720 1198 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
CDX2Q99626 C1QC-202ENST00000374639 1183 ntAPPRIS P1 TSL 2 BASIC16.92■□□□□ 0.3
CDX2Q99626 CELA2B-201ENST00000375910 923 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
CDX2Q99626 SEPT12-202ENST00000396693 1156 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
CDX2Q99626 BLVRA-202ENST00000402924 1161 ntAPPRIS P1 TSL 2 BASIC16.92■□□□□ 0.3
CDX2Q99626 AL137856.1-201ENST00000429398 773 ntTSL 3 BASIC16.92■□□□□ 0.3
CDX2Q99626 AC016700.1-201ENST00000429424 312 ntBASIC16.92■□□□□ 0.3
CDX2Q99626 AL669970.3-201ENST00000435284 428 ntTSL 3 BASIC16.92■□□□□ 0.3
CDX2Q99626 SPTLC1P5-201ENST00000450718 252 ntBASIC16.92■□□□□ 0.3
CDX2Q99626 KRT18P66-201ENST00000452970 1269 ntBASIC16.92■□□□□ 0.3
CDX2Q99626 CENPM-208ENST00000472374 541 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
CDX2Q99626 MSRB3-209ENST00000540804 884 ntTSL 2 BASIC16.92■□□□□ 0.3
CDX2Q99626 AC137723.1-201ENST00000584705 709 ntTSL 3 BASIC16.92■□□□□ 0.3
CDX2Q99626 TPGS2-209ENST00000589049 1102 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
CDX2Q99626 TUBB6-210ENST00000590967 430 ntTSL 3 BASIC16.92■□□□□ 0.3
CDX2Q99626 FAM83H-201ENST00000388913 5654 ntAPPRIS P1 TSL 5 BASIC16.92■□□□□ 0.3
CDX2Q99626 MUTYH-201ENST00000354383 1744 ntAPPRIS P4 TSL 1 (best) BASIC16.92■□□□□ 0.3
CDX2Q99626 CNOT6-202ENST00000393356 6303 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
CDX2Q99626 KRT8-201ENST00000293308 1882 ntAPPRIS P1 TSL 5 BASIC16.92■□□□□ 0.3
CDX2Q99626 ANKIB1-201ENST00000265742 6081 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
CDX2Q99626 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC16.92■□□□□ 0.3
CDX2Q99626 APOBEC3A-202ENST00000402255 1478 ntAPPRIS P1 TSL 5 BASIC16.92■□□□□ 0.3
CDX2Q99626 GLIPR2-205ENST00000619700 1645 ntTSL 3 BASIC16.92■□□□□ 0.3
CDX2Q99626 AC006277.1-201ENST00000624348 1610 ntBASIC16.92■□□□□ 0.3
CDX2Q99626 ARSA-204ENST00000395621 1918 ntAPPRIS P1 TSL 2 BASIC16.92■□□□□ 0.3
CDX2Q99626 GCSH-208ENST00000639169 2537 ntTSL 2 BASIC16.92■□□□□ 0.3
CDX2Q99626 GNB1-209ENST00000610897 3145 ntAPPRIS P1 TSL 5 BASIC16.92■□□□□ 0.3
CDX2Q99626 MAN1B1-207ENST00000535144 2296 ntTSL 2 BASIC16.91■□□□□ 0.3
CDX2Q99626 TCP11-206ENST00000412155 1690 ntAPPRIS ALT2 TSL 2 BASIC16.91■□□□□ 0.3
CDX2Q99626 SOCS2-AS1-202ENST00000500986 1655 ntTSL 2 BASIC16.91■□□□□ 0.3
CDX2Q99626 EIF4E1B-203ENST00000504597 1676 ntAPPRIS P1 TSL 5 BASIC16.91■□□□□ 0.3
CDX2Q99626 CKMT2-201ENST00000254035 1512 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
CDX2Q99626 SLC25A3-217ENST00000552981 1351 ntAPPRIS ALT1 TSL 1 (best) BASIC16.91■□□□□ 0.3
CDX2Q99626 FAM109B-201ENST00000321753 2335 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
CDX2Q99626 VOPP1-201ENST00000285279 2962 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
CDX2Q99626 C1RL-210ENST00000544702 1569 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
CDX2Q99626 DUSP14-204ENST00000613659 1559 ntAPPRIS P1 TSL 2 BASIC16.91■□□□□ 0.3
CDX2Q99626 CYTL1-201ENST00000307746 1003 ntAPPRIS P2 TSL 1 (best) BASIC16.91■□□□□ 0.3
CDX2Q99626 BRF1-202ENST00000379932 884 ntTSL 5 BASIC16.91■□□□□ 0.3
CDX2Q99626 PSMB5-203ENST00000425762 900 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
CDX2Q99626 RPL13AP19-201ENST00000434320 584 ntBASIC16.91■□□□□ 0.3
CDX2Q99626 LRRC74B-201ENST00000442047 1179 ntAPPRIS P1 TSL 5 BASIC16.91■□□□□ 0.3
CDX2Q99626 PMF1-BGLAP-203ENST00000490491 1007 ntAPPRIS P1 TSL 2 BASIC16.91■□□□□ 0.3
CDX2Q99626 AC022137.2-201ENST00000503482 481 ntBASIC16.91■□□□□ 0.3
CDX2Q99626 AP003419.2-201ENST00000543494 711 ntAPPRIS P1 TSL 3 BASIC16.91■□□□□ 0.3
CDX2Q99626 AC091891.1-201ENST00000560688 688 ntTSL 3 BASIC16.91■□□□□ 0.3
CDX2Q99626 CYBA-208ENST00000567174 1085 ntTSL 2 BASIC16.91■□□□□ 0.3
CDX2Q99626 CLEC18C-201ENST00000314151 1934 ntAPPRIS P2 TSL 1 (best) BASIC16.91■□□□□ 0.3
CDX2Q99626 CLEC18A-208ENST00000568461 1934 ntAPPRIS P2 TSL 1 (best) BASIC16.91■□□□□ 0.3
CDX2Q99626 NFE2-202ENST00000435572 1762 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
CDX2Q99626 SP140L-204ENST00000444636 1781 ntTSL 5 BASIC16.91■□□□□ 0.3
CDX2Q99626 STX6-201ENST00000258301 4851 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
CDX2Q99626 ZBTB48-202ENST00000377674 2293 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
CDX2Q99626 DPAGT1-203ENST00000409993 3274 ntAPPRIS P1 TSL 2 BASIC16.91■□□□□ 0.3
CDX2Q99626 CXorf40B-202ENST00000370404 1316 ntAPPRIS P2 TSL 2 BASIC16.91■□□□□ 0.3
CDX2Q99626 PITX2-201ENST00000306732 2320 ntAPPRIS P4 TSL 1 (best) BASIC16.91■□□□□ 0.3
CDX2Q99626 CYP2W1-201ENST00000308919 2304 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
CDX2Q99626 DMRTA2-202ENST00000418121 2840 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
CDX2Q99626 LINC01011-201ENST00000445000 2811 ntTSL 2 BASIC16.91■□□□□ 0.3
CDX2Q99626 BID-205ENST00000399774 2167 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
CDX2Q99626 LINC01819-201ENST00000422351 2156 ntTSL 5 BASIC16.91■□□□□ 0.3
CDX2Q99626 GBA2-201ENST00000378088 1672 ntTSL 2 BASIC16.91■□□□□ 0.3
CDX2Q99626 PHF20L1-209ENST00000395386 6237 ntAPPRIS P1 TSL 5 BASIC16.91■□□□□ 0.3
CDX2Q99626 H2AFY-202ENST00000312469 1859 ntTSL 5 BASIC16.9■□□□□ 0.3
CDX2Q99626 LHFPL3-201ENST00000401970 1378 ntAPPRIS ALT1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CDX2Q99626 PSMC3-209ENST00000530912 1390 ntTSL 5 BASIC16.9■□□□□ 0.3
CDX2Q99626 GLMP-213ENST00000612353 1365 ntAPPRIS ALT2 TSL 5 BASIC16.9■□□□□ 0.3
CDX2Q99626 GLMP-215ENST00000622703 1364 ntAPPRIS ALT2 TSL 2 BASIC16.9■□□□□ 0.3
CDX2Q99626 LPCAT3-201ENST00000261407 2268 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CDX2Q99626 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CDX2Q99626 CDK3-202ENST00000448471 1570 ntAPPRIS P1 TSL 5 BASIC16.9■□□□□ 0.3
CDX2Q99626 CORO6-210ENST00000580212 2345 ntTSL 5 BASIC16.9■□□□□ 0.3
CDX2Q99626 CRB2-202ENST00000373631 5550 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CDX2Q99626 DYNC1LI2-201ENST00000258198 4515 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CDX2Q99626 DYNLRB2-201ENST00000305904 497 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CDX2Q99626 HRCT1-201ENST00000354323 950 ntAPPRIS P1 BASIC16.9■□□□□ 0.3
CDX2Q99626 SF3B5-201ENST00000367569 693 ntAPPRIS P1 BASIC16.9■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 44.2 ms