Protein–RNA interactions for Protein: Q8TAU0

NKX2-3, Homeobox protein Nkx-2.3, humanhuman

Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-3Q8TAU0 RPS3A-212ENST00000514682 985 ntTSL 5 BASIC19.42■□□□□ 0.7
NKX2-3Q8TAU0 EEF1D-207ENST00000524624 1084 ntAPPRIS ALT2 TSL 5 BASIC19.42■□□□□ 0.7
NKX2-3Q8TAU0 RAB30-AS1-202ENST00000526795 567 ntTSL 5 BASIC19.42■□□□□ 0.7
NKX2-3Q8TAU0 CCDC85C-204ENST00000555822 930 ntTSL 5 BASIC19.42■□□□□ 0.7
NKX2-3Q8TAU0 SPDYE22P-201ENST00000582158 798 ntBASIC19.42■□□□□ 0.7
NKX2-3Q8TAU0 RPS15-212ENST00000593052 629 ntTSL 2 BASIC19.42■□□□□ 0.7
NKX2-3Q8TAU0 AC243571.2-201ENST00000615265 628 ntTSL 3 BASIC19.42■□□□□ 0.7
NKX2-3Q8TAU0 AC008267.7-201ENST00000624570 1194 ntBASIC19.42■□□□□ 0.7
NKX2-3Q8TAU0 RAB34-224ENST00000636513 888 ntTSL 5 BASIC19.42■□□□□ 0.7
NKX2-3Q8TAU0 CCDC110-201ENST00000307588 2898 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
NKX2-3Q8TAU0 EFNB3-201ENST00000226091 3222 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
NKX2-3Q8TAU0 ULK3-201ENST00000440863 2623 ntAPPRIS P3 TSL 2 BASIC19.42■□□□□ 0.7
NKX2-3Q8TAU0 CGREF1-206ENST00000405600 1346 ntAPPRIS P2 TSL 4 BASIC19.42■□□□□ 0.7
NKX2-3Q8TAU0 CORO1A-208ENST00000565497 1348 ntTSL 5 BASIC19.42■□□□□ 0.7
NKX2-3Q8TAU0 RPN1-201ENST00000296255 2314 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
NKX2-3Q8TAU0 ABHD2-207ENST00000565973 2347 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
NKX2-3Q8TAU0 SH2D2A-202ENST00000368199 1658 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
NKX2-3Q8TAU0 GOLGA2P3Y-201ENST00000416946 1653 ntBASIC19.42■□□□□ 0.7
NKX2-3Q8TAU0 KANSL1-218ENST00000638275 5352 ntTSL 5 BASIC19.42■□□□□ 0.7
NKX2-3Q8TAU0 AC107871.1-202ENST00000562767 3389 ntAPPRIS P1 TSL 3 BASIC19.42■□□□□ 0.7
NKX2-3Q8TAU0 B4GALNT4-201ENST00000329962 3444 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
NKX2-3Q8TAU0 SNRPF-201ENST00000266735 1389 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
NKX2-3Q8TAU0 LDOC1-201ENST00000370526 1381 ntAPPRIS P1 BASIC19.42■□□□□ 0.7
NKX2-3Q8TAU0 ORMDL3-201ENST00000304046 2111 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
NKX2-3Q8TAU0 DDOST-202ENST00000415136 2126 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
NKX2-3Q8TAU0 MSMO1-202ENST00000393766 1789 ntTSL 2 BASIC19.42■□□□□ 0.7
NKX2-3Q8TAU0 EIPR1-202ENST00000398659 1795 ntTSL 5 BASIC19.42■□□□□ 0.7
NKX2-3Q8TAU0 SIPA1-201ENST00000394224 3628 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
NKX2-3Q8TAU0 PIK3R2-201ENST00000222254 4033 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
NKX2-3Q8TAU0 AJ239322.1-201ENST00000419362 2209 ntTSL 2 BASIC19.41■□□□□ 0.7
NKX2-3Q8TAU0 TAPBP-233ENST00000426633 1888 ntAPPRIS P4 TSL 1 (best) BASIC19.41■□□□□ 0.7
NKX2-3Q8TAU0 DCST1-201ENST00000295542 2279 ntAPPRIS P3 TSL 2 BASIC19.41■□□□□ 0.7
NKX2-3Q8TAU0 NEIL2-204ENST00000455213 2323 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
NKX2-3Q8TAU0 ST3GAL5-229ENST00000638986 2331 ntAPPRIS ALT2 TSL 5 BASIC19.41■□□□□ 0.7
NKX2-3Q8TAU0 HPN-201ENST00000262626 2363 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
NKX2-3Q8TAU0 CPSF4-201ENST00000292476 1691 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
NKX2-3Q8TAU0 PYCR2-201ENST00000343818 1689 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
NKX2-3Q8TAU0 RASSF1-205ENST00000395126 1657 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
NKX2-3Q8TAU0 NDUFAF3-203ENST00000395458 808 ntTSL 2 BASIC19.41■□□□□ 0.7
NKX2-3Q8TAU0 LINC00398-201ENST00000414407 906 ntTSL 2 BASIC19.41■□□□□ 0.7
NKX2-3Q8TAU0 COX5BP8-201ENST00000416911 349 ntBASIC19.41■□□□□ 0.7
NKX2-3Q8TAU0 FYCO1-203ENST00000438446 1072 ntTSL 5 BASIC19.41■□□□□ 0.7
NKX2-3Q8TAU0 KRT17P7-201ENST00000451704 1104 ntBASIC19.41■□□□□ 0.7
NKX2-3Q8TAU0 RN7SL692P-201ENST00000464677 288 ntBASIC19.41■□□□□ 0.7
NKX2-3Q8TAU0 WASHC3-213ENST00000545679 865 ntTSL 2 BASIC19.41■□□□□ 0.7
NKX2-3Q8TAU0 AC133550.1-201ENST00000563565 295 ntTSL 3 BASIC19.41■□□□□ 0.7
NKX2-3Q8TAU0 AC010619.1-201ENST00000599536 675 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
NKX2-3Q8TAU0 MIER1-205ENST00000371014 1728 ntTSL 2 BASIC19.41■□□□□ 0.7
NKX2-3Q8TAU0 GLUD1-201ENST00000277865 3039 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
NKX2-3Q8TAU0 SH2B1-203ENST00000359285 3033 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
NKX2-3Q8TAU0 BPTF-201ENST00000306378 9688 ntAPPRIS P2 TSL 1 (best) BASIC19.41■□□□□ 0.7
NKX2-3Q8TAU0 AC110813.1-201ENST00000507934 2209 ntTSL 2 BASIC19.41■□□□□ 0.7
NKX2-3Q8TAU0 BIN3-201ENST00000276416 1835 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
NKX2-3Q8TAU0 AL591845.1-201ENST00000373137 1838 ntTSL 2 BASIC19.41■□□□□ 0.7
NKX2-3Q8TAU0 AATK-203ENST00000417379 5081 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
NKX2-3Q8TAU0 SLC10A3-204ENST00000393587 1862 ntAPPRIS P3 TSL 2 BASIC19.41■□□□□ 0.7
NKX2-3Q8TAU0 PIKFYVE-204ENST00000407449 1898 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
NKX2-3Q8TAU0 NOMO3-201ENST00000263012 3911 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
NKX2-3Q8TAU0 NAP1L4-201ENST00000380542 2511 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
NKX2-3Q8TAU0 ISLR2-203ENST00000435464 4259 ntAPPRIS P1 TSL 2 BASIC19.4■□□□□ 0.7
NKX2-3Q8TAU0 PCIF1-201ENST00000372409 2747 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
NKX2-3Q8TAU0 SLC17A7-204ENST00000600601 2237 ntTSL 2 BASIC19.4■□□□□ 0.7
NKX2-3Q8TAU0 GLDC-201ENST00000321612 3900 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
NKX2-3Q8TAU0 FLAD1-203ENST00000315144 1730 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
NKX2-3Q8TAU0 FAM49B-224ENST00000522941 1700 ntTSL 5 BASIC19.4■□□□□ 0.7
NKX2-3Q8TAU0 SEPT8-205ENST00000378701 1817 ntTSL 2 BASIC19.4■□□□□ 0.7
NKX2-3Q8TAU0 SCP2-213ENST00000528311 1896 ntTSL 2 BASIC19.4■□□□□ 0.7
NKX2-3Q8TAU0 TXNDC11-202ENST00000356957 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
NKX2-3Q8TAU0 LRRC37A5P-201ENST00000374304 1103 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
NKX2-3Q8TAU0 TNNT3-204ENST00000381558 1258 ntAPPRIS ALT2 TSL 5 BASIC19.4■□□□□ 0.7
NKX2-3Q8TAU0 AL136311.1-206ENST00000416069 899 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
NKX2-3Q8TAU0 VMO1-203ENST00000416307 712 ntTSL 2 BASIC19.4■□□□□ 0.7
NKX2-3Q8TAU0 SPDYE14P-201ENST00000442619 822 ntBASIC19.4■□□□□ 0.7
NKX2-3Q8TAU0 AP001471.1-201ENST00000454245 672 ntTSL 3 BASIC19.4■□□□□ 0.7
NKX2-3Q8TAU0 KRT18P34-201ENST00000488218 1270 ntBASIC19.4■□□□□ 0.7
NKX2-3Q8TAU0 RBAKDN-201ENST00000498308 514 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
NKX2-3Q8TAU0 AC069120.2-201ENST00000524091 540 ntBASIC19.4■□□□□ 0.7
NKX2-3Q8TAU0 ZNF576-206ENST00000533118 867 ntAPPRIS P1 TSL 2 BASIC19.4■□□□□ 0.7
NKX2-3Q8TAU0 GMFG-207ENST00000598034 1028 ntAPPRIS ALT1 TSL 1 (best) BASIC19.4■□□□□ 0.7
NKX2-3Q8TAU0 AC092070.4-201ENST00000599803 507 ntTSL 5 BASIC19.4■□□□□ 0.7
NKX2-3Q8TAU0 FHL2-212ENST00000607522 759 ntTSL 2 BASIC19.4■□□□□ 0.7
NKX2-3Q8TAU0 AC009118.2-201ENST00000613275 655 ntBASIC19.4■□□□□ 0.7
NKX2-3Q8TAU0 DBI-211ENST00000627093 554 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
NKX2-3Q8TAU0 FAM174A-201ENST00000312637 1356 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
NKX2-3Q8TAU0 GLIS1-202ENST00000628545 2807 ntAPPRIS ALT2 TSL 5 BASIC19.4■□□□□ 0.7
NKX2-3Q8TAU0 RUSC1-201ENST00000292254 2163 ntAPPRIS P3 TSL 1 (best) BASIC19.4■□□□□ 0.7
NKX2-3Q8TAU0 FBXO21-201ENST00000330622 2906 ntAPPRIS P3 TSL 1 (best) BASIC19.4■□□□□ 0.7
NKX2-3Q8TAU0 COL23A1-202ENST00000407622 2329 ntAPPRIS ALT2 TSL 5 BASIC19.4■□□□□ 0.7
NKX2-3Q8TAU0 AC005622.1-201ENST00000636801 1703 ntBASIC19.39■□□□□ 0.7
NKX2-3Q8TAU0 SLC43A3-203ENST00000395124 2617 ntAPPRIS P3 TSL 1 (best) BASIC19.39■□□□□ 0.7
NKX2-3Q8TAU0 DNAAF2-202ENST00000406043 2819 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.7
NKX2-3Q8TAU0 SLC22A1-202ENST00000366963 1948 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
NKX2-3Q8TAU0 FBXO33-201ENST00000298097 3853 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
NKX2-3Q8TAU0 IRAK1-204ENST00000393687 2049 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
NKX2-3Q8TAU0 ARHGAP27-208ENST00000528384 2296 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
NKX2-3Q8TAU0 ZBTB45-201ENST00000354590 2352 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
NKX2-3Q8TAU0 CCNL1-201ENST00000295925 549 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
NKX2-3Q8TAU0 CSNK1G2-AS1-201ENST00000314315 1252 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
NKX2-3Q8TAU0 VCX2-201ENST00000317103 815 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
NKX2-3Q8TAU0 MAPK15-202ENST00000395107 834 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 55.7 ms