Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 CENPM-201ENST00000215980 966 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
SYNE1Q8NF91 LCE3E-201ENST00000368789 611 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
SYNE1Q8NF91 XAGE1A-203ENST00000375602 614 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
SYNE1Q8NF91 XAGE1B-203ENST00000375616 614 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
SYNE1Q8NF91 ZNF655-216ENST00000449244 544 ntTSL 4 BASIC5.13□□□□□ -1.59
SYNE1Q8NF91 SERF1A-207ENST00000512649 846 ntTSL 2 BASIC5.13□□□□□ -1.59
SYNE1Q8NF91 KRTAP5-9-201ENST00000528743 1136 ntAPPRIS P1 BASIC5.13□□□□□ -1.59
SYNE1Q8NF91 TCF25-225ENST00000614813 2047 ntTSL 5 BASIC5.13□□□□□ -1.59
SYNE1Q8NF91 POLR1D-220ENST00000637071 1943 ntTSL 5 BASIC5.13□□□□□ -1.59
SYNE1Q8NF91 DDHD1-201ENST00000323669 5503 ntTSL 2 BASIC5.13□□□□□ -1.59
SYNE1Q8NF91 TJP3-202ENST00000541714 3350 ntAPPRIS P3 TSL 2 BASIC5.13□□□□□ -1.59
SYNE1Q8NF91 OSR2-209ENST00000522510 1528 ntAPPRIS P1 TSL 2 BASIC5.13□□□□□ -1.59
SYNE1Q8NF91 IRF1-202ENST00000405885 2061 ntAPPRIS P1 TSL 5 BASIC5.13□□□□□ -1.59
SYNE1Q8NF91 OTOL1-201ENST00000327928 1434 ntAPPRIS P1 TSL 2 BASIC5.13□□□□□ -1.59
SYNE1Q8NF91 AL590787.1-201ENST00000568856 1315 ntBASIC5.13□□□□□ -1.59
SYNE1Q8NF91 NRBP1-201ENST00000233557 2887 ntAPPRIS P1 TSL 2 BASIC5.13□□□□□ -1.59
SYNE1Q8NF91 MAPK7-202ENST00000308406 3149 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
SYNE1Q8NF91 PERM1-201ENST00000341290 3035 ntAPPRIS ALT2 TSL 2 BASIC5.13□□□□□ -1.59
SYNE1Q8NF91 FO538757.1-201ENST00000623083 1397 ntBASIC5.13□□□□□ -1.59
SYNE1Q8NF91 TIPARP-201ENST00000295924 4109 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
SYNE1Q8NF91 NCLN-201ENST00000246117 4005 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
SYNE1Q8NF91 COQ8A-201ENST00000366777 2872 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
SYNE1Q8NF91 FDXR-203ENST00000420580 1705 ntTSL 2 BASIC5.13□□□□□ -1.59
SYNE1Q8NF91 ARSA-201ENST00000216124 2050 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
SYNE1Q8NF91 RAI14-202ENST00000428746 5064 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
SYNE1Q8NF91 ST6GALNAC6-202ENST00000373141 2424 ntAPPRIS ALT1 TSL 2 BASIC5.13□□□□□ -1.59
SYNE1Q8NF91 NDUFA11-201ENST00000308961 539 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
SYNE1Q8NF91 MUC1-201ENST00000337604 859 ntAPPRIS P3 TSL 1 (best) BASIC5.13□□□□□ -1.59
SYNE1Q8NF91 STOML1-203ENST00000359750 984 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
SYNE1Q8NF91 LCE1E-201ENST00000368770 1180 ntAPPRIS P2 TSL 1 (best) BASIC5.13□□□□□ -1.59
SYNE1Q8NF91 CXCL12-206ENST00000395795 404 ntTSL 5 BASIC5.13□□□□□ -1.59
SYNE1Q8NF91 TAS2R41-201ENST00000408916 924 ntAPPRIS P1 BASIC5.13□□□□□ -1.59
SYNE1Q8NF91 PIK3CD-AS2-201ENST00000415330 939 ntTSL 5 BASIC5.13□□□□□ -1.59
SYNE1Q8NF91 AC007405.3-202ENST00000426475 660 ntTSL 3 BASIC5.13□□□□□ -1.59
SYNE1Q8NF91 FTCD-AS1-201ENST00000446649 500 ntTSL 2 BASIC5.13□□□□□ -1.59
SYNE1Q8NF91 AC092384.3-201ENST00000561980 531 ntTSL 4 BASIC5.13□□□□□ -1.59
SYNE1Q8NF91 MSLNL-201ENST00000442466 2109 ntAPPRIS P1 TSL 5 BASIC5.13□□□□□ -1.59
SYNE1Q8NF91 AC084018.2-201ENST00000613093 2607 ntBASIC5.13□□□□□ -1.59
SYNE1Q8NF91 HYAL3-207ENST00000621157 1696 ntAPPRIS P1 TSL 5 BASIC5.13□□□□□ -1.59
SYNE1Q8NF91 INPP5J-207ENST00000405300 2515 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
SYNE1Q8NF91 MYO1D-201ENST00000318217 5563 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
SYNE1Q8NF91 SYDE1-201ENST00000342784 3264 ntAPPRIS P1 TSL 2 BASIC5.13□□□□□ -1.59
SYNE1Q8NF91 TUFM-201ENST00000313511 2071 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
SYNE1Q8NF91 MAGEF1-201ENST00000317897 1636 ntAPPRIS P1 BASIC5.13□□□□□ -1.59
SYNE1Q8NF91 CACNA2D1-201ENST00000356253 3858 ntTSL 5 BASIC5.13□□□□□ -1.59
SYNE1Q8NF91 TSSK3-201ENST00000373534 1368 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
SYNE1Q8NF91 LONP1-213ENST00000590729 2626 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
SYNE1Q8NF91 ELL-203ENST00000596124 1852 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
SYNE1Q8NF91 HARS-203ENST00000431330 1774 ntTSL 2 BASIC5.13□□□□□ -1.59
SYNE1Q8NF91 PENK-201ENST00000314922 1199 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
SYNE1Q8NF91 MRPL23-201ENST00000381514 919 ntTSL 3 BASIC5.13□□□□□ -1.59
SYNE1Q8NF91 MIR661-201ENST00000384842 89 ntBASIC5.13□□□□□ -1.59
SYNE1Q8NF91 SNCA-205ENST00000394991 1290 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
SYNE1Q8NF91 NPY-203ENST00000407573 705 ntAPPRIS P1 TSL 3 BASIC5.13□□□□□ -1.59
SYNE1Q8NF91 SNHG17-206ENST00000436764 973 ntTSL 5 BASIC5.13□□□□□ -1.59
SYNE1Q8NF91 AL627443.1-201ENST00000456477 1035 ntTSL 3 BASIC5.13□□□□□ -1.59
SYNE1Q8NF91 MEIS3P1-201ENST00000495167 958 ntBASIC5.13□□□□□ -1.59
SYNE1Q8NF91 SPINK2-203ENST00000506738 763 ntAPPRIS ALT2 TSL 2 BASIC5.13□□□□□ -1.59
SYNE1Q8NF91 TUBA1A-203ENST00000546918 984 ntTSL 3 BASIC5.13□□□□□ -1.59
SYNE1Q8NF91 FLYWCH2-203ENST00000572006 754 ntAPPRIS ALT2 TSL 2 BASIC5.13□□□□□ -1.59
SYNE1Q8NF91 CYP2W1-201ENST00000308919 2304 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
SYNE1Q8NF91 WNT7A-201ENST00000285018 4041 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
SYNE1Q8NF91 SNX31-201ENST00000311812 2457 ntAPPRIS P1 TSL 2 BASIC5.13□□□□□ -1.59
SYNE1Q8NF91 AP001999.1-201ENST00000513405 3684 ntTSL 2 BASIC5.13□□□□□ -1.59
SYNE1Q8NF91 MAP2K1-201ENST00000307102 3410 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
SYNE1Q8NF91 SLC22A5-203ENST00000435065 1746 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
SYNE1Q8NF91 AC022211.2-201ENST00000585075 2527 ntBASIC5.13□□□□□ -1.59
SYNE1Q8NF91 LRCH3-201ENST00000334859 2258 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
SYNE1Q8NF91 EVI5L-202ENST00000538904 2418 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
SYNE1Q8NF91 C16orf71-204ENST00000590191 2564 ntAPPRIS ALT2 TSL 5 BASIC5.13□□□□□ -1.59
SYNE1Q8NF91 WDR66-201ENST00000288912 4467 ntAPPRIS P3 TSL 1 (best) BASIC5.13□□□□□ -1.59
SYNE1Q8NF91 NPM1-201ENST00000296930 1758 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
SYNE1Q8NF91 MOCS2-202ENST00000396954 1785 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
SYNE1Q8NF91 UVRAG-201ENST00000356136 4123 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
SYNE1Q8NF91 AL135999.2-201ENST00000622438 1686 ntBASIC5.13□□□□□ -1.59
SYNE1Q8NF91 MOB3A-201ENST00000357066 3391 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
SYNE1Q8NF91 FBXL5-202ENST00000412094 2837 ntAPPRIS ALT1 TSL 1 (best) BASIC5.13□□□□□ -1.59
SYNE1Q8NF91 SYT12-201ENST00000393946 4534 ntAPPRIS P1 TSL 2 BASIC5.13□□□□□ -1.59
SYNE1Q8NF91 LSM1-201ENST00000311351 1147 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
SYNE1Q8NF91 RAC2-204ENST00000406508 893 ntTSL 5 BASIC5.13□□□□□ -1.59
SYNE1Q8NF91 FAM221A-202ENST00000409192 888 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
SYNE1Q8NF91 RBPMS2P1-201ENST00000437762 623 ntBASIC5.13□□□□□ -1.59
SYNE1Q8NF91 AC243571.2-201ENST00000615265 628 ntTSL 3 BASIC5.13□□□□□ -1.59
SYNE1Q8NF91 HNRNPDL-207ENST00000614627 3968 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
SYNE1Q8NF91 LINC00639-201ENST00000553932 4496 ntTSL 2 BASIC5.13□□□□□ -1.59
SYNE1Q8NF91 PRKD2-214ENST00000600194 2923 ntAPPRIS ALT2 TSL 2 BASIC5.13□□□□□ -1.59
SYNE1Q8NF91 RNF222-202ENST00000399398 3062 ntAPPRIS P1 TSL 5 BASIC5.13□□□□□ -1.59
SYNE1Q8NF91 PRPH-201ENST00000257860 3245 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
SYNE1Q8NF91 HYAL3-202ENST00000359051 1635 ntTSL 5 BASIC5.13□□□□□ -1.59
SYNE1Q8NF91 CDK17-201ENST00000261211 4157 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
SYNE1Q8NF91 SELENON-202ENST00000361547 4334 ntAPPRIS P4 TSL 1 (best) BASIC5.13□□□□□ -1.59
SYNE1Q8NF91 PSRC1-205ENST00000409138 1826 ntTSL 2 BASIC5.13□□□□□ -1.59
SYNE1Q8NF91 HMOX2-217ENST00000619528 1829 ntAPPRIS P1 TSL 5 BASIC5.13□□□□□ -1.59
SYNE1Q8NF91 NRXN1-229ENST00000628515 3243 ntTSL 5 BASIC5.13□□□□□ -1.59
SYNE1Q8NF91 LMAN1-201ENST00000251047 5521 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
SYNE1Q8NF91 NKAIN4-202ENST00000370313 1421 ntTSL 3 BASIC5.12□□□□□ -1.59
SYNE1Q8NF91 HTR7-203ENST00000371719 3033 ntAPPRIS ALT1 TSL 1 (best) BASIC5.12□□□□□ -1.59
SYNE1Q8NF91 C16orf92-201ENST00000300575 895 ntAPPRIS P2 TSL 1 (best) BASIC5.12□□□□□ -1.59
SYNE1Q8NF91 CKLF-203ENST00000351137 508 ntAPPRIS ALT2 TSL 1 (best) BASIC5.12□□□□□ -1.59
SYNE1Q8NF91 OSTC-201ENST00000361564 1077 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
Retrieved 100 of 98,524 protein–RNA pairs in 39.3 ms