Protein–RNA interactions for Protein: Q3MJ40

CCDC144B, Coiled-coil domain-containing protein 144B, humanhuman

Predictions only

Length 725 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC144BQ3MJ40 HMBS-203ENST00000442944 1548 ntTSL 5 BASIC19.15■□□□□ 0.66
CCDC144BQ3MJ40 MAPKAP1-206ENST00000373511 3252 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
CCDC144BQ3MJ40 LRCH2-202ENST00000538422 4868 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
CCDC144BQ3MJ40 ANXA8-203ENST00000583874 1860 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
CCDC144BQ3MJ40 BCAT2-202ENST00000402551 2041 ntTSL 2 BASIC19.14■□□□□ 0.65
CCDC144BQ3MJ40 CABP5-201ENST00000293255 1257 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
CCDC144BQ3MJ40 LY6G6C-201ENST00000375819 992 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
CCDC144BQ3MJ40 RPL30-202ENST00000396070 440 ntTSL 2 BASIC19.14■□□□□ 0.65
CCDC144BQ3MJ40 FAM221A-202ENST00000409192 888 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
CCDC144BQ3MJ40 AL354836.1-201ENST00000414042 681 ntTSL 2 BASIC19.14■□□□□ 0.65
CCDC144BQ3MJ40 GPS2P2-201ENST00000430745 888 ntBASIC19.14■□□□□ 0.65
CCDC144BQ3MJ40 PRRT3-AS1-201ENST00000431558 614 ntTSL 2 BASIC19.14■□□□□ 0.65
CCDC144BQ3MJ40 AL022068.1-202ENST00000432171 794 ntTSL 3 BASIC19.14■□□□□ 0.65
CCDC144BQ3MJ40 SPCS2P4-201ENST00000436160 681 ntBASIC19.14■□□□□ 0.65
CCDC144BQ3MJ40 TSPAN32-207ENST00000451520 1236 ntAPPRIS ALT2 TSL 2 BASIC19.14■□□□□ 0.65
CCDC144BQ3MJ40 LINC02387-201ENST00000541749 868 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
CCDC144BQ3MJ40 AQP6-203ENST00000551733 849 ntTSL 3 BASIC19.14■□□□□ 0.65
CCDC144BQ3MJ40 AC009053.3-201ENST00000567148 574 ntTSL 4 BASIC19.14■□□□□ 0.65
CCDC144BQ3MJ40 AC051619.7-201ENST00000568314 623 ntBASIC19.14■□□□□ 0.65
CCDC144BQ3MJ40 TMEM88-202ENST00000574668 510 ntTSL 2 BASIC19.14■□□□□ 0.65
CCDC144BQ3MJ40 AP001059.3-201ENST00000619053 235 ntBASIC19.14■□□□□ 0.65
CCDC144BQ3MJ40 BSG-215ENST00000618006 1329 ntTSL 2 BASIC19.14■□□□□ 0.65
CCDC144BQ3MJ40 PRR5-203ENST00000403581 2279 ntTSL 2 BASIC19.14■□□□□ 0.65
CCDC144BQ3MJ40 UBAC2-203ENST00000403766 1375 ntAPPRIS P1 TSL 2 BASIC19.14■□□□□ 0.65
CCDC144BQ3MJ40 NKX3-1-201ENST00000380871 3271 ntAPPRIS P3 TSL 1 (best) BASIC19.14■□□□□ 0.65
CCDC144BQ3MJ40 AC012569.1-201ENST00000591191 1524 ntBASIC19.14■□□□□ 0.65
CCDC144BQ3MJ40 DDX19B-204ENST00000451014 1608 ntTSL 2 BASIC19.14■□□□□ 0.65
CCDC144BQ3MJ40 N4BP3-201ENST00000274605 6080 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
CCDC144BQ3MJ40 TAPBP-238ENST00000475304 1686 ntAPPRIS ALT2 TSL 5 BASIC19.14■□□□□ 0.65
CCDC144BQ3MJ40 COTL1-203ENST00000564057 1677 ntTSL 5 BASIC19.14■□□□□ 0.65
CCDC144BQ3MJ40 MFHAS1-201ENST00000276282 6414 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
CCDC144BQ3MJ40 WAC-203ENST00000354911 3042 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
CCDC144BQ3MJ40 AL513523.2-202ENST00000427283 2040 ntBASIC19.13■□□□□ 0.65
CCDC144BQ3MJ40 MYB-242ENST00000618728 3545 ntTSL 5 BASIC19.13■□□□□ 0.65
CCDC144BQ3MJ40 HDAC10-205ENST00000448072 2133 ntTSL 5 BASIC19.13■□□□□ 0.65
CCDC144BQ3MJ40 NRG1-216ENST00000523079 2359 ntTSL 2 BASIC19.13■□□□□ 0.65
CCDC144BQ3MJ40 SGO1-203ENST00000412997 2587 ntAPPRIS P4 TSL 1 (best) BASIC19.13■□□□□ 0.65
CCDC144BQ3MJ40 LSP1-204ENST00000406638 2640 ntAPPRIS ALT2 TSL 2 BASIC19.13■□□□□ 0.65
CCDC144BQ3MJ40 SYVN1-202ENST00000307289 2841 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
CCDC144BQ3MJ40 L1CAM-205ENST00000370060 5113 ntAPPRIS P4 TSL 5 BASIC19.13■□□□□ 0.65
CCDC144BQ3MJ40 IKBIP-201ENST00000299157 3189 ntAPPRIS P4 TSL 1 (best) BASIC19.13■□□□□ 0.65
CCDC144BQ3MJ40 CEP19-201ENST00000399942 1172 ntAPPRIS ALT2 TSL 5 BASIC19.13■□□□□ 0.65
CCDC144BQ3MJ40 AC069262.1-201ENST00000539058 672 ntBASIC19.13■□□□□ 0.65
CCDC144BQ3MJ40 AL009183.1-201ENST00000603760 355 ntBASIC19.13■□□□□ 0.65
CCDC144BQ3MJ40 AJ011932.1-201ENST00000621707 465 ntBASIC19.13■□□□□ 0.65
CCDC144BQ3MJ40 MDFIC-201ENST00000257724 4598 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
CCDC144BQ3MJ40 IRS2-201ENST00000375856 8138 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
CCDC144BQ3MJ40 LMNA-202ENST00000361308 1713 ntTSL 5 BASIC19.13■□□□□ 0.65
CCDC144BQ3MJ40 ALDH3A1-205ENST00000444455 1771 ntAPPRIS P1 TSL 5 BASIC19.13■□□□□ 0.65
CCDC144BQ3MJ40 C2orf81-202ENST00000612891 1902 ntAPPRIS ALT2 TSL 5 BASIC19.13■□□□□ 0.65
CCDC144BQ3MJ40 CCNA2-202ENST00000618014 2797 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
CCDC144BQ3MJ40 MAPKAP1-202ENST00000350766 3256 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
CCDC144BQ3MJ40 BBS5-201ENST00000295240 3475 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
CCDC144BQ3MJ40 C2CD4A-201ENST00000355522 3445 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
CCDC144BQ3MJ40 ANKRD26P3-201ENST00000454044 2748 ntBASIC19.12■□□□□ 0.65
CCDC144BQ3MJ40 RWDD4-201ENST00000326397 2641 ntAPPRIS P2 TSL 2 BASIC19.12■□□□□ 0.65
CCDC144BQ3MJ40 AIFM3-202ENST00000399167 2387 ntAPPRIS P3 TSL 2 BASIC19.12■□□□□ 0.65
CCDC144BQ3MJ40 AIFM3-207ENST00000440238 2368 ntAPPRIS P3 TSL 1 (best) BASIC19.12■□□□□ 0.65
CCDC144BQ3MJ40 PRKCSH-217ENST00000592741 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
CCDC144BQ3MJ40 ONECUT1-201ENST00000305901 2092 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
CCDC144BQ3MJ40 POC1A-201ENST00000296484 1898 ntAPPRIS P3 TSL 1 (best) BASIC19.12■□□□□ 0.65
CCDC144BQ3MJ40 CLDN4-201ENST00000340958 1831 ntAPPRIS P1 BASIC19.12■□□□□ 0.65
CCDC144BQ3MJ40 PRR15-201ENST00000319694 1678 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
CCDC144BQ3MJ40 ACP5-212ENST00000592828 1699 ntAPPRIS P1 TSL 5 BASIC19.12■□□□□ 0.65
CCDC144BQ3MJ40 AC022188.1-201ENST00000620960 1664 ntBASIC19.12■□□□□ 0.65
CCDC144BQ3MJ40 LINC00029-201ENST00000370341 1631 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
CCDC144BQ3MJ40 ADCY1-204ENST00000621543 1647 ntTSL 5 BASIC19.12■□□□□ 0.65
CCDC144BQ3MJ40 TPT1-AS1-215ENST00000522673 1519 ntTSL 5 BASIC19.12■□□□□ 0.65
CCDC144BQ3MJ40 PACS1-201ENST00000320580 4392 ntAPPRIS P2 TSL 1 (best) BASIC19.12■□□□□ 0.65
CCDC144BQ3MJ40 WDR45-240ENST00000635003 1376 ntTSL 3 BASIC19.12■□□□□ 0.65
CCDC144BQ3MJ40 HNRNPH3-202ENST00000354695 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC19.12■□□□□ 0.65
CCDC144BQ3MJ40 TUBB3P1-201ENST00000405796 1332 ntBASIC19.12■□□□□ 0.65
CCDC144BQ3MJ40 IGLL5-203ENST00000532223 1335 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
CCDC144BQ3MJ40 RESP18-201ENST00000333527 795 ntAPPRIS P2 TSL 1 (best) BASIC19.12■□□□□ 0.65
CCDC144BQ3MJ40 DGKZ-202ENST00000343674 3816 ntAPPRIS P3 TSL 2 BASIC19.12■□□□□ 0.65
CCDC144BQ3MJ40 OSTC-201ENST00000361564 1077 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
CCDC144BQ3MJ40 HDAC8-202ENST00000373556 704 ntTSL 2 BASIC19.12■□□□□ 0.65
CCDC144BQ3MJ40 AC055876.3-201ENST00000431496 288 ntBASIC19.12■□□□□ 0.65
CCDC144BQ3MJ40 RBPMS2P1-201ENST00000437762 623 ntBASIC19.12■□□□□ 0.65
CCDC144BQ3MJ40 AL732437.1-201ENST00000442008 595 ntTSL 4 BASIC19.12■□□□□ 0.65
CCDC144BQ3MJ40 C5orf66-202ENST00000507641 547 ntTSL 3 BASIC19.12■□□□□ 0.65
CCDC144BQ3MJ40 AC106897.1-201ENST00000512874 394 ntTSL 2 BASIC19.12■□□□□ 0.65
CCDC144BQ3MJ40 OTUB2-202ENST00000553723 708 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
CCDC144BQ3MJ40 COX5A-203ENST00000564811 568 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
CCDC144BQ3MJ40 PMF1-BGLAP-204ENST00000567140 655 ntTSL 3 BASIC19.12■□□□□ 0.65
CCDC144BQ3MJ40 KRT16P2-202ENST00000579062 563 ntTSL 4 BASIC19.12■□□□□ 0.65
CCDC144BQ3MJ40 AC138649.4-201ENST00000612222 287 ntBASIC19.12■□□□□ 0.65
CCDC144BQ3MJ40 GOLGA2-215ENST00000639983 1038 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
CCDC144BQ3MJ40 GTF2H1-203ENST00000453096 2707 ntAPPRIS P1 TSL 2 BASIC19.12■□□□□ 0.65
CCDC144BQ3MJ40 C2orf81-206ENST00000640868 2407 ntAPPRIS ALT2 BASIC19.12■□□□□ 0.65
CCDC144BQ3MJ40 OR6D1P-202ENST00000641007 5290 ntBASIC19.12■□□□□ 0.65
CCDC144BQ3MJ40 NBL1-211ENST00000618761 2051 ntAPPRIS P3 TSL 1 (best) BASIC19.12■□□□□ 0.65
CCDC144BQ3MJ40 PRICKLE1-211ENST00000639566 3341 ntAPPRIS P1 TSL 5 BASIC19.12■□□□□ 0.65
CCDC144BQ3MJ40 ADAMTS4-201ENST00000367995 1961 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
CCDC144BQ3MJ40 BRIX1-201ENST00000336767 1926 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
CCDC144BQ3MJ40 RIMS4-201ENST00000372851 5203 ntAPPRIS P3 TSL 1 (best) BASIC19.11■□□□□ 0.65
CCDC144BQ3MJ40 ADM5-201ENST00000420022 1718 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
CCDC144BQ3MJ40 RELT-201ENST00000064780 3535 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
CCDC144BQ3MJ40 USP7-201ENST00000344836 5412 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
CCDC144BQ3MJ40 NR2C2-201ENST00000323373 2406 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 29.8 ms