Protein–RNA interactions for Protein: P78396

CCNA1, Cyclin-A1, humanhuman

Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCNA1P78396 AC079776.1-201ENST00000401540 1152 ntBASIC18.62■□□□□ 0.57
CCNA1P78396 RNF183-202ENST00000416588 849 ntAPPRIS P1 TSL 3 BASIC18.62■□□□□ 0.57
CCNA1P78396 COPS6-202ENST00000418625 1107 ntAPPRIS ALT2 TSL 5 BASIC18.62■□□□□ 0.57
CCNA1P78396 AC091729.1-201ENST00000449721 869 ntTSL 3 BASIC18.62■□□□□ 0.57
CCNA1P78396 RN7SL837P-201ENST00000463010 287 ntBASIC18.62■□□□□ 0.57
CCNA1P78396 AC091133.3-201ENST00000504865 432 ntTSL 5 BASIC18.62■□□□□ 0.57
CCNA1P78396 FTH1-202ENST00000526640 786 ntTSL 2 BASIC18.62■□□□□ 0.57
CCNA1P78396 AC023310.3-201ENST00000557027 670 ntBASIC18.62■□□□□ 0.57
CCNA1P78396 AC100756.1-201ENST00000562736 682 ntBASIC18.62■□□□□ 0.57
CCNA1P78396 AC138749.3-201ENST00000567691 622 ntBASIC18.62■□□□□ 0.57
CCNA1P78396 ELOF1-206ENST00000590700 585 ntAPPRIS P1 TSL 3 BASIC18.62■□□□□ 0.57
CCNA1P78396 AC116165.1-201ENST00000611806 668 ntBASIC18.62■□□□□ 0.57
CCNA1P78396 TEAD2-203ENST00000539846 1444 ntTSL 2 BASIC18.62■□□□□ 0.57
CCNA1P78396 FDPS-201ENST00000356657 1478 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
CCNA1P78396 PLCB2-201ENST00000260402 4616 ntAPPRIS P3 TSL 2 BASIC18.62■□□□□ 0.57
CCNA1P78396 FBXO4-201ENST00000281623 1682 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CCNA1P78396 TGIF1-205ENST00000401449 1670 ntTSL 2 BASIC18.62■□□□□ 0.57
CCNA1P78396 TCP1-203ENST00000420894 1671 ntTSL 5 BASIC18.62■□□□□ 0.57
CCNA1P78396 ARPC1B-211ENST00000451682 1715 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
CCNA1P78396 UBL7-209ENST00000567435 1720 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CCNA1P78396 TUBG2-201ENST00000251412 1761 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CCNA1P78396 SPNS3-201ENST00000355530 2133 ntAPPRIS P1 TSL 2 BASIC18.62■□□□□ 0.57
CCNA1P78396 PCCA-203ENST00000376286 2481 ntTSL 2 BASIC18.62■□□□□ 0.57
CCNA1P78396 AEBP2-201ENST00000266508 3620 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
CCNA1P78396 FAM124A-202ENST00000322475 4761 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CCNA1P78396 UNC13A-206ENST00000552293 5314 ntAPPRIS ALT2 TSL 5 BASIC18.61■□□□□ 0.57
CCNA1P78396 ADGRB2-212ENST00000527361 4919 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
CCNA1P78396 GRIN3B-201ENST00000234389 3281 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CCNA1P78396 TBX4-201ENST00000240335 2470 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
CCNA1P78396 VEZF1-202ENST00000581208 2321 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
CCNA1P78396 B3GNT3-201ENST00000318683 2226 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CCNA1P78396 BCAS3-204ENST00000585744 2203 ntAPPRIS ALT2 TSL 5 BASIC18.61■□□□□ 0.57
CCNA1P78396 MFSD2A-202ENST00000372811 2154 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CCNA1P78396 C1orf56-201ENST00000368926 2096 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CCNA1P78396 CD8A-202ENST00000352580 1977 ntAPPRIS ALT2 TSL 2 BASIC18.61■□□□□ 0.57
CCNA1P78396 TTLL5-219ENST00000556977 1961 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
CCNA1P78396 DRG1-201ENST00000331457 1746 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CCNA1P78396 FBXW9-201ENST00000393261 1738 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CCNA1P78396 SIRT6-202ENST00000337491 1641 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CCNA1P78396 CCDC28A-201ENST00000332797 1496 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
CCNA1P78396 RNLS-201ENST00000331772 1447 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CCNA1P78396 CTSB-220ENST00000531089 1436 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
CCNA1P78396 KLRG1-201ENST00000266551 1335 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
CCNA1P78396 MRPL55-202ENST00000336300 722 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
CCNA1P78396 CTRB1-201ENST00000361017 858 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CCNA1P78396 MRPL55-206ENST00000366732 722 ntTSL 3 BASIC18.61■□□□□ 0.57
CCNA1P78396 CLCN6-207ENST00000376497 814 ntTSL 3 BASIC18.61■□□□□ 0.57
CCNA1P78396 AGTRAP-202ENST00000376627 1055 ntTSL 5 BASIC18.61■□□□□ 0.57
CCNA1P78396 SZT2-AS1-201ENST00000396885 699 ntTSL 3 BASIC18.61■□□□□ 0.57
CCNA1P78396 PGF-202ENST00000405431 666 ntTSL 5 BASIC18.61■□□□□ 0.57
CCNA1P78396 MIR1909-201ENST00000411312 80 ntBASIC18.61■□□□□ 0.57
CCNA1P78396 BMP7-AS1-201ENST00000445956 436 ntTSL 2 BASIC18.61■□□□□ 0.57
CCNA1P78396 AC092910.3-202ENST00000469070 982 ntTSL 3 BASIC18.61■□□□□ 0.57
CCNA1P78396 AC008406.2-201ENST00000507058 532 ntTSL 3 BASIC18.61■□□□□ 0.57
CCNA1P78396 GLI4-203ENST00000517468 963 ntTSL 5 BASIC18.61■□□□□ 0.57
CCNA1P78396 AC233702.7-201ENST00000536958 924 ntTSL 5 BASIC18.61■□□□□ 0.57
CCNA1P78396 AC020978.5-201ENST00000564147 533 ntTSL 4 BASIC18.61■□□□□ 0.57
CCNA1P78396 RRP7BP-205ENST00000566851 833 ntBASIC18.61■□□□□ 0.57
CCNA1P78396 AC111170.2-201ENST00000585369 768 ntTSL 3 BASIC18.61■□□□□ 0.57
CCNA1P78396 APOC4-201ENST00000591600 348 ntTSL 3 BASIC18.61■□□□□ 0.57
CCNA1P78396 NOP53-AS1-201ENST00000602048 540 ntTSL 4 BASIC18.61■□□□□ 0.57
CCNA1P78396 KDM4B-201ENST00000159111 5593 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CCNA1P78396 AC026471.1-201ENST00000564629 3026 ntBASIC18.61■□□□□ 0.57
CCNA1P78396 PHF12-201ENST00000268756 2957 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
CCNA1P78396 PIGZ-202ENST00000412723 2701 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CCNA1P78396 RCAN3-205ENST00000436717 2574 ntTSL 3 BASIC18.61■□□□□ 0.57
CCNA1P78396 MIER1-204ENST00000371012 2420 ntTSL 2 BASIC18.61■□□□□ 0.57
CCNA1P78396 RASSF5-205ENST00000581503 5586 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
CCNA1P78396 HNF1A-202ENST00000400024 2337 ntTSL 2 BASIC18.61■□□□□ 0.57
CCNA1P78396 SMARCA4-201ENST00000344626 5392 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
CCNA1P78396 AL645728.1-201ENST00000366221 2101 ntBASIC18.61■□□□□ 0.57
CCNA1P78396 RDH13-202ENST00000396247 1987 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
CCNA1P78396 RDH13-223ENST00000610356 1931 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
CCNA1P78396 AC018470.1-201ENST00000624790 3129 ntBASIC18.6■□□□□ 0.57
CCNA1P78396 C1QTNF6-202ENST00000397110 1647 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CCNA1P78396 POLR1D-207ENST00000621089 1606 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
CCNA1P78396 BX276092.9-201ENST00000636797 1563 ntAPPRIS ALT2 TSL 5 BASIC18.6■□□□□ 0.57
CCNA1P78396 CFAP43-203ENST00000369719 1434 ntTSL 2 BASIC18.6■□□□□ 0.57
CCNA1P78396 SPAG7-201ENST00000206020 1058 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CCNA1P78396 SMAGP-202ENST00000398453 1062 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CCNA1P78396 AC112492.5-201ENST00000421897 457 ntBASIC18.6■□□□□ 0.57
CCNA1P78396 RPS2P32-201ENST00000439199 892 ntBASIC18.6■□□□□ 0.57
CCNA1P78396 APOA1-AS-201ENST00000444200 563 ntTSL 4 BASIC18.6■□□□□ 0.57
CCNA1P78396 PRSS48-202ENST00000455694 989 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CCNA1P78396 RPL10P19-202ENST00000520582 722 ntTSL 3 BASIC18.6■□□□□ 0.57
CCNA1P78396 AC007406.4-201ENST00000539568 765 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
CCNA1P78396 SEPHS1-206ENST00000545675 2988 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
CCNA1P78396 TIMM17BP1-201ENST00000545713 516 ntBASIC18.6■□□□□ 0.57
CCNA1P78396 FAM9B-202ENST00000362066 2047 ntTSL 2 BASIC18.6■□□□□ 0.57
CCNA1P78396 SSC4D-201ENST00000275560 2801 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CCNA1P78396 SLC35A3-217ENST00000639807 2767 ntTSL 5 BASIC18.6■□□□□ 0.57
CCNA1P78396 PTGES3-201ENST00000262033 1920 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CCNA1P78396 AC005833.1-201ENST00000280684 4237 ntAPPRIS P1 BASIC18.6■□□□□ 0.57
CCNA1P78396 FARP2-202ENST00000373287 2580 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
CCNA1P78396 F11R-206ENST00000621309 4770 ntTSL 5 BASIC18.6■□□□□ 0.57
CCNA1P78396 KCNC2-203ENST00000393288 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
CCNA1P78396 FBXW11-202ENST00000296933 4539 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CCNA1P78396 ZNF274-202ENST00000345813 2678 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
CCNA1P78396 ACOT12-201ENST00000307624 2086 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CCNA1P78396 TNIP1-221ENST00000610874 2629 ntTSL 5 BASIC18.59■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 31.5 ms