Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 BCL2L12-203ENST00000441864 1371 ntAPPRIS ALT2 TSL 1 (best) BASIC15.98■□□□□ 0.15
FOXA1P55317 HYAL1-201ENST00000266031 2517 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
FOXA1P55317 GCLC-213ENST00000616923 3694 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
FOXA1P55317 RGR-202ENST00000359452 2247 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
FOXA1P55317 DCP1B-202ENST00000535873 2231 ntTSL 2 BASIC15.98■□□□□ 0.15
FOXA1P55317 ADGRB2-212ENST00000527361 4919 ntAPPRIS ALT2 TSL 1 (best) BASIC15.98■□□□□ 0.15
FOXA1P55317 GK2-201ENST00000358842 1942 ntAPPRIS P1 BASIC15.98■□□□□ 0.15
FOXA1P55317 ZFAND5-205ENST00000376962 2785 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
FOXA1P55317 HHIP-202ENST00000434550 1770 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
FOXA1P55317 NEURL1B-201ENST00000369800 6424 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
FOXA1P55317 HSPA12B-201ENST00000254963 3151 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
FOXA1P55317 TSC2-204ENST00000401874 5421 ntAPPRIS ALT2 TSL 1 (best) BASIC15.97■□□□□ 0.15
FOXA1P55317 MGAT4B-202ENST00000337755 3027 ntTSL 2 BASIC15.97■□□□□ 0.15
FOXA1P55317 FIP1L1-207ENST00000507922 1335 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
FOXA1P55317 IGLL5-203ENST00000532223 1335 ntAPPRIS ALT2 TSL 1 (best) BASIC15.97■□□□□ 0.15
FOXA1P55317 SDR39U1-206ENST00000553930 1325 ntTSL 5 BASIC15.97■□□□□ 0.15
FOXA1P55317 MIEF1-202ENST00000402881 2269 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
FOXA1P55317 ST3GAL2-201ENST00000342907 4450 ntAPPRIS P1 TSL 5 BASIC15.97■□□□□ 0.15
FOXA1P55317 ARFIP2-203ENST00000423813 1430 ntTSL 2 BASIC15.97■□□□□ 0.15
FOXA1P55317 RAVER2-202ENST00000371072 4362 ntAPPRIS P2 TSL 1 (best) BASIC15.97■□□□□ 0.15
FOXA1P55317 FAM99B-201ENST00000382166 1067 ntTSL 5 BASIC15.97■□□□□ 0.15
FOXA1P55317 CD99L2-206ENST00000466436 988 ntAPPRIS P4 TSL 1 (best) BASIC15.97■□□□□ 0.15
FOXA1P55317 CCND3-213ENST00000510503 1257 ntTSL 3 BASIC15.97■□□□□ 0.15
FOXA1P55317 CHMP1A-208ENST00000550102 803 ntTSL 5 BASIC15.97■□□□□ 0.15
FOXA1P55317 AC068594.1-202ENST00000581657 749 ntTSL 3 BASIC15.97■□□□□ 0.15
FOXA1P55317 OAZ1-202ENST00000582888 969 ntAPPRIS ALT1 TSL 5 BASIC15.97■□□□□ 0.15
FOXA1P55317 AL121912.1-201ENST00000603683 238 ntBASIC15.97■□□□□ 0.15
FOXA1P55317 AC117500.6-201ENST00000624871 588 ntBASIC15.97■□□□□ 0.15
FOXA1P55317 AC005593.1-201ENST00000624894 515 ntBASIC15.97■□□□□ 0.15
FOXA1P55317 ASIC1-201ENST00000228468 4072 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
FOXA1P55317 RASGRP2-201ENST00000354024 2310 ntAPPRIS P2 TSL 1 (best) BASIC15.97■□□□□ 0.15
FOXA1P55317 HS6ST2-201ENST00000370833 1938 ntTSL 5 BASIC15.97■□□□□ 0.15
FOXA1P55317 SIRT6-201ENST00000305232 1506 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
FOXA1P55317 PNCK-202ENST00000370142 1525 ntTSL 5 BASIC15.97■□□□□ 0.15
FOXA1P55317 DBN1-202ENST00000309007 2995 ntAPPRIS ALT2 TSL 1 (best) BASIC15.97■□□□□ 0.15
FOXA1P55317 CRELD1-206ENST00000452070 1778 ntAPPRIS P1 TSL 2 BASIC15.97■□□□□ 0.15
FOXA1P55317 AKR1B15-202ENST00000457545 1621 ntAPPRIS P1 TSL 5 BASIC15.97■□□□□ 0.15
FOXA1P55317 PBX3-204ENST00000373489 2775 ntAPPRIS P3 TSL 1 (best) BASIC15.97■□□□□ 0.15
FOXA1P55317 ATP4B-201ENST00000335288 1488 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
FOXA1P55317 MRS2-202ENST00000378353 1740 ntAPPRIS ALT2 TSL 1 (best) BASIC15.97■□□□□ 0.15
FOXA1P55317 AC069224.1-201ENST00000566372 1715 ntBASIC15.97■□□□□ 0.15
FOXA1P55317 PHF12-205ENST00000577226 7679 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
FOXA1P55317 AC005064.1-201ENST00000422488 2725 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
FOXA1P55317 C2orf27A-205ENST00000624391 1335 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
FOXA1P55317 MYOD1-201ENST00000250003 1801 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
FOXA1P55317 TRIM7-201ENST00000274773 2840 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
FOXA1P55317 TEAD4-202ENST00000359864 1690 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
FOXA1P55317 BCL2L12-202ENST00000246785 1431 ntAPPRIS P3 TSL 1 (best) BASIC15.96■□□□□ 0.15
FOXA1P55317 TUBB8-201ENST00000561967 1413 ntTSL 5 BASIC15.96■□□□□ 0.15
FOXA1P55317 RNF182-206ENST00000537388 3274 ntAPPRIS P1 TSL 2 BASIC15.96■□□□□ 0.15
FOXA1P55317 C19orf54-201ENST00000378313 2753 ntAPPRIS P1 TSL 2 BASIC15.96■□□□□ 0.15
FOXA1P55317 ATP6AP2-201ENST00000378438 2022 ntAPPRIS ALT2 TSL 5 BASIC15.96■□□□□ 0.15
FOXA1P55317 MRNIP-201ENST00000292586 1238 ntAPPRIS P4 TSL 1 (best) BASIC15.96■□□□□ 0.15
FOXA1P55317 TM2D1-201ENST00000294613 1250 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
FOXA1P55317 LONRF3-201ENST00000304778 2989 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
FOXA1P55317 VAMP5-201ENST00000306384 689 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
FOXA1P55317 TM2D1-204ENST00000371180 1248 ntTSL 5 BASIC15.96■□□□□ 0.15
FOXA1P55317 DPM2-202ENST00000373110 738 ntTSL 2 BASIC15.96■□□□□ 0.15
FOXA1P55317 INIP-202ENST00000374236 874 ntTSL 2 BASIC15.96■□□□□ 0.15
FOXA1P55317 CBX7-202ENST00000401405 784 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
FOXA1P55317 HMGA1P7-201ENST00000406908 502 ntBASIC15.96■□□□□ 0.15
FOXA1P55317 KRT18P67-201ENST00000432816 1264 ntBASIC15.96■□□□□ 0.15
FOXA1P55317 FAM185BP-201ENST00000443595 716 ntBASIC15.96■□□□□ 0.15
FOXA1P55317 HYAL1-206ENST00000447605 666 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
FOXA1P55317 AC079781.3-201ENST00000449110 356 ntBASIC15.96■□□□□ 0.15
FOXA1P55317 AL137026.1-202ENST00000452578 1089 ntTSL 2 BASIC15.96■□□□□ 0.15
FOXA1P55317 MOK-208ENST00000519058 917 ntTSL 2 BASIC15.96■□□□□ 0.15
FOXA1P55317 TM2D1-212ENST00000606498 969 ntAPPRIS P1 TSL 5 BASIC15.96■□□□□ 0.15
FOXA1P55317 H2BFM-201ENST00000355016 1882 ntAPPRIS P1 TSL 2 BASIC15.96■□□□□ 0.15
FOXA1P55317 CMKLR1-206ENST00000552995 1890 ntAPPRIS P3 TSL 1 (best) BASIC15.96■□□□□ 0.15
FOXA1P55317 REPS1-208ENST00000450536 4537 ntAPPRIS ALT1 TSL 1 (best) BASIC15.96■□□□□ 0.15
FOXA1P55317 OSBPL6-203ENST00000357080 2217 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
FOXA1P55317 ACE-203ENST00000413513 2237 ntTSL 2 BASIC15.96■□□□□ 0.15
FOXA1P55317 PDE1B-201ENST00000243052 3444 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
FOXA1P55317 AC144831.1-201ENST00000573312 2656 ntBASIC15.96■□□□□ 0.15
FOXA1P55317 WAC-203ENST00000354911 3042 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
FOXA1P55317 PDE1C-202ENST00000396182 2420 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
FOXA1P55317 CNOT3-204ENST00000447684 2765 ntTSL 2 BASIC15.96■□□□□ 0.15
FOXA1P55317 GABRA5-202ENST00000355395 2183 ntAPPRIS P1 TSL 5 BASIC15.96■□□□□ 0.14
FOXA1P55317 CNKSR1-202ENST00000374253 2538 ntAPPRIS ALT2 TSL 1 (best) BASIC15.96■□□□□ 0.14
FOXA1P55317 RASAL1-207ENST00000548055 2502 ntAPPRIS ALT2 TSL 1 (best) BASIC15.96■□□□□ 0.14
FOXA1P55317 RAI1-201ENST00000353383 7662 ntAPPRIS P2 TSL 1 (best) BASIC15.96■□□□□ 0.14
FOXA1P55317 RHCE-201ENST00000294413 1591 ntAPPRIS P2 TSL 1 (best) BASIC15.96■□□□□ 0.14
FOXA1P55317 CNTNAP3-201ENST00000297668 5064 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.14
FOXA1P55317 STK24-203ENST00000397517 4578 ntTSL 2 BASIC15.95■□□□□ 0.14
FOXA1P55317 SYT15-202ENST00000374323 6428 ntTSL 2 BASIC15.95■□□□□ 0.14
FOXA1P55317 HTR1B-201ENST00000369947 2021 ntAPPRIS P1 BASIC15.95■□□□□ 0.14
FOXA1P55317 PLAA-205ENST00000520884 2041 ntTSL 2 BASIC15.95■□□□□ 0.14
FOXA1P55317 ZDHHC4-206ENST00000405731 1348 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
FOXA1P55317 CD83-201ENST00000379153 2471 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
FOXA1P55317 ZSCAN18-208ENST00000595944 1768 ntTSL 2 BASIC15.95■□□□□ 0.14
FOXA1P55317 ICA1L-201ENST00000358299 3457 ntAPPRIS P1 TSL 2 BASIC15.95■□□□□ 0.14
FOXA1P55317 GINS2-201ENST00000253462 2673 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
FOXA1P55317 SCN3B-202ENST00000392770 6061 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
FOXA1P55317 AL592424.1-201ENST00000563624 1536 ntBASIC15.95■□□□□ 0.14
FOXA1P55317 TMEM143-202ENST00000377431 1960 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
FOXA1P55317 MYH14-203ENST00000425460 6811 ntAPPRIS P3 TSL 5 BASIC15.95■□□□□ 0.14
FOXA1P55317 LMNB1-201ENST00000261366 2878 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
FOXA1P55317 EXOC3L1-201ENST00000314586 2510 ntAPPRIS P1 TSL 2 BASIC15.95■□□□□ 0.14
FOXA1P55317 C14orf79-205ENST00000549240 2503 ntAPPRIS ALT2 TSL 2 BASIC15.95■□□□□ 0.14
Retrieved 100 of 98,524 protein–RNA pairs in 30.7 ms