Protein–RNA interactions for Protein: P55289

CDH12, Cadherin-12, humanhuman

Predictions only

Length 794 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH12P55289 OPN1LW-201ENST00000369951 1261 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
CDH12P55289 YDJC-202ENST00000398873 1066 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
CDH12P55289 MMP24-AS1-201ENST00000424358 867 ntAPPRIS P1 TSL 2 BASIC15.43■□□□□ 0.06
CDH12P55289 MRPL28-203ENST00000429738 310 ntTSL 2 BASIC15.43■□□□□ 0.06
CDH12P55289 DHRS12-203ENST00000444610 1162 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
CDH12P55289 LINC01293-201ENST00000453951 1266 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
CDH12P55289 CMTM1-213ENST00000529506 581 ntAPPRIS ALT2 TSL 1 (best) BASIC15.43■□□□□ 0.06
CDH12P55289 TMEM106C-214ENST00000550161 976 ntTSL 3 BASIC15.43■□□□□ 0.06
CDH12P55289 DHRS4-205ENST00000558263 1089 ntTSL 5 BASIC15.43■□□□□ 0.06
CDH12P55289 DHRS4L2-207ENST00000558753 556 ntTSL 2 BASIC15.43■□□□□ 0.06
CDH12P55289 SMAD3-210ENST00000559092 584 ntTSL 4 BASIC15.43■□□□□ 0.06
CDH12P55289 SDCCAG3P1-201ENST00000589292 1150 ntBASIC15.43■□□□□ 0.06
CDH12P55289 SMIM20-205ENST00000614775 1190 ntTSL 5 BASIC15.43■□□□□ 0.06
CDH12P55289 AC004706.3-202ENST00000621574 984 ntBASIC15.43■□□□□ 0.06
CDH12P55289 TOP3BP1-201ENST00000420768 1380 ntBASIC15.43■□□□□ 0.06
CDH12P55289 AC002310.6-201ENST00000624451 1377 ntBASIC15.43■□□□□ 0.06
CDH12P55289 PRRT2-205ENST00000567659 1470 ntTSL 2 BASIC15.43■□□□□ 0.06
CDH12P55289 B3GNT8-201ENST00000321702 1874 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
CDH12P55289 SCP2-201ENST00000371509 1889 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
CDH12P55289 THNSL2-202ENST00000343544 2052 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
CDH12P55289 AL031731.1-201ENST00000642131 2094 ntBASIC15.43■□□□□ 0.06
CDH12P55289 ARHGEF1-204ENST00000378152 2986 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
CDH12P55289 ALK-201ENST00000389048 6220 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
CDH12P55289 NID2-208ENST00000617139 3827 ntTSL 5 BASIC15.43■□□□□ 0.06
CDH12P55289 EIF2B4-206ENST00000451130 1633 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
CDH12P55289 TMEM101-201ENST00000206380 1536 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
CDH12P55289 TPT1-AS1-215ENST00000522673 1519 ntTSL 5 BASIC15.43■□□□□ 0.06
CDH12P55289 ERVK13-1-203ENST00000564340 1449 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
CDH12P55289 ZFP1-208ENST00000568079 1426 ntTSL 2 BASIC15.43■□□□□ 0.06
CDH12P55289 PTHLH-203ENST00000395872 1318 ntAPPRIS ALT1 TSL 5 BASIC15.43■□□□□ 0.06
CDH12P55289 SALL3-206ENST00000616649 2958 ntTSL 5 BASIC15.42■□□□□ 0.06
CDH12P55289 OTX1-201ENST00000282549 2861 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
CDH12P55289 OTX1-202ENST00000366671 2861 ntAPPRIS P1 TSL 3 BASIC15.42■□□□□ 0.06
CDH12P55289 AC007495.1-201ENST00000501259 2678 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
CDH12P55289 PDXK-202ENST00000327574 2583 ntTSL 2 BASIC15.42■□□□□ 0.06
CDH12P55289 MBD4-203ENST00000429544 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC15.42■□□□□ 0.06
CDH12P55289 PDXDC1-204ENST00000455313 2183 ntTSL 2 BASIC15.42■□□□□ 0.06
CDH12P55289 TMPRSS13-203ENST00000524993 1950 ntAPPRIS P3 TSL 1 (best) BASIC15.42■□□□□ 0.06
CDH12P55289 CLEC18B-201ENST00000339953 1865 ntAPPRIS P2 TSL 1 (best) BASIC15.42■□□□□ 0.06
CDH12P55289 CLEC18C-202ENST00000536907 1865 ntAPPRIS ALT2 TSL 5 BASIC15.42■□□□□ 0.06
CDH12P55289 ANKRD26-201ENST00000376087 6591 ntAPPRIS P2 TSL 5 BASIC15.42■□□□□ 0.06
CDH12P55289 INTS11-203ENST00000419704 1798 ntTSL 2 BASIC15.42■□□□□ 0.06
CDH12P55289 TPBG-201ENST00000369750 6484 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
CDH12P55289 PRKD2-216ENST00000601806 2906 ntAPPRIS ALT2 TSL 5 BASIC15.42■□□□□ 0.06
CDH12P55289 FAM208A-201ENST00000355628 5239 ntAPPRIS ALT2 TSL 1 (best) BASIC15.42■□□□□ 0.06
CDH12P55289 ATP5S-201ENST00000245448 1671 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
CDH12P55289 AXIN2-202ENST00000375702 2541 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
CDH12P55289 ANXA11-203ENST00000422982 2534 ntAPPRIS P3 TSL 1 (best) BASIC15.42■□□□□ 0.06
CDH12P55289 INHA-201ENST00000243786 1468 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
CDH12P55289 SUPT20HL2-201ENST00000486479 2409 ntBASIC15.42■□□□□ 0.06
CDH12P55289 AC012485.3-201ENST00000637634 2424 ntTSL 5 BASIC15.42■□□□□ 0.06
CDH12P55289 DYRK3-201ENST00000367106 2329 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
CDH12P55289 NANS-201ENST00000210444 1170 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
CDH12P55289 TMEM14A-201ENST00000211314 992 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
CDH12P55289 VKORC1-201ENST00000300851 876 ntTSL 2 BASIC15.42■□□□□ 0.06
CDH12P55289 UPK3A-202ENST00000396082 627 ntAPPRIS ALT2 TSL 1 (best) BASIC15.42■□□□□ 0.06
CDH12P55289 POM121L12-201ENST00000408890 1283 ntAPPRIS P1 BASIC15.42■□□□□ 0.06
CDH12P55289 C7orf34-201ENST00000409607 766 ntAPPRIS P2 TSL 1 (best) BASIC15.42■□□□□ 0.06
CDH12P55289 SNHG11-204ENST00000420006 720 ntTSL 3 BASIC15.42■□□□□ 0.06
CDH12P55289 SNHG11-206ENST00000432153 1181 ntTSL 3 BASIC15.42■□□□□ 0.06
CDH12P55289 PAWRP1-201ENST00000451083 565 ntBASIC15.42■□□□□ 0.06
CDH12P55289 TSTD3-201ENST00000452647 962 ntAPPRIS P2 TSL 2 BASIC15.42■□□□□ 0.06
CDH12P55289 SCARNA2-201ENST00000458748 420 ntBASIC15.42■□□□□ 0.06
CDH12P55289 PGAP2-206ENST00000459679 795 ntTSL 2 BASIC15.42■□□□□ 0.06
CDH12P55289 AC079385.1-201ENST00000551505 570 ntTSL 4 BASIC15.42■□□□□ 0.06
CDH12P55289 AHSA1-208ENST00000555517 832 ntTSL 2 BASIC15.42■□□□□ 0.06
CDH12P55289 ARMC7-204ENST00000582136 1204 ntTSL 2 BASIC15.42■□□□□ 0.06
CDH12P55289 TBCB-205ENST00000585746 875 ntTSL 3 BASIC15.42■□□□□ 0.06
CDH12P55289 AC011455.1-201ENST00000593830 504 ntTSL 3 BASIC15.42■□□□□ 0.06
CDH12P55289 C18orf21-207ENST00000610527 1059 ntTSL 2 BASIC15.42■□□□□ 0.06
CDH12P55289 C18orf21-208ENST00000618334 856 ntTSL 3 BASIC15.42■□□□□ 0.06
CDH12P55289 FUS-201ENST00000254108 5119 ntAPPRIS P3 TSL 1 (best) BASIC15.42■□□□□ 0.06
CDH12P55289 LHCGR-203ENST00000403273 1921 ntTSL 5 BASIC15.42■□□□□ 0.06
CDH12P55289 HPN-201ENST00000262626 2363 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
CDH12P55289 ABHD18-202ENST00000398965 2177 ntAPPRIS P1 TSL 2 BASIC15.42■□□□□ 0.06
CDH12P55289 KTN1-AS1-202ENST00000412224 2185 ntTSL 2 BASIC15.42■□□□□ 0.06
CDH12P55289 MYOC-201ENST00000037502 2095 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
CDH12P55289 CANX-201ENST00000247461 4260 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
CDH12P55289 TXNDC2-201ENST00000306084 1873 ntAPPRIS ALT2 TSL 1 (best) BASIC15.42■□□□□ 0.06
CDH12P55289 CLIC6-202ENST00000360731 3860 ntAPPRIS ALT2 TSL 1 (best) BASIC15.42■□□□□ 0.06
CDH12P55289 GFAP-203ENST00000435360 1779 ntTSL 2 BASIC15.41■□□□□ 0.06
CDH12P55289 GHDC-201ENST00000301671 2650 ntAPPRIS P1 TSL 2 BASIC15.41■□□□□ 0.06
CDH12P55289 SATB2-206ENST00000457245 2656 ntAPPRIS P1 TSL 2 BASIC15.41■□□□□ 0.06
CDH12P55289 LZTR1-201ENST00000215739 4572 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
CDH12P55289 PRKD2-214ENST00000600194 2923 ntAPPRIS ALT2 TSL 2 BASIC15.41■□□□□ 0.06
CDH12P55289 FAM222B-202ENST00000452648 2836 ntAPPRIS P1 TSL 2 BASIC15.41■□□□□ 0.06
CDH12P55289 SALL4-203ENST00000395997 1918 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
CDH12P55289 CCDC116-203ENST00000607942 1913 ntAPPRIS ALT2 TSL 2 BASIC15.41■□□□□ 0.06
CDH12P55289 AC083864.1-201ENST00000381493 1497 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
CDH12P55289 KCND3-202ENST00000315987 2716 ntAPPRIS P4 TSL 1 (best) BASIC15.41■□□□□ 0.06
CDH12P55289 USP45-201ENST00000327681 6255 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
CDH12P55289 TTC29-202ENST00000398886 1729 ntAPPRIS ALT2 TSL 5 BASIC15.41■□□□□ 0.06
CDH12P55289 SLC25A48-203ENST00000425402 2062 ntTSL 5 BASIC15.41■□□□□ 0.06
CDH12P55289 NRSN1-203ENST00000378478 2408 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
CDH12P55289 S100A11-201ENST00000271638 594 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
CDH12P55289 AKR1C7P-201ENST00000305623 895 ntBASIC15.41■□□□□ 0.06
CDH12P55289 HIST2H2AB-201ENST00000331128 393 ntAPPRIS P1 BASIC15.41■□□□□ 0.06
CDH12P55289 SAPCD2P3-201ENST00000455031 850 ntBASIC15.41■□□□□ 0.06
CDH12P55289 ARTN-206ENST00000472435 402 ntTSL 3 BASIC15.41■□□□□ 0.06
CDH12P55289 PLPP5-214ENST00000531823 875 ntTSL 3 BASIC15.41■□□□□ 0.06
Retrieved 100 of 98,524 protein–RNA pairs in 44.6 ms