Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 ING4-202ENST00000396807 1393 ntAPPRIS ALT1 TSL 1 (best) BASIC18.98■□□□□ 0.63
CTCFP49711 RAB11FIP2-201ENST00000355624 6061 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
CTCFP49711 PRR36-202ENST00000618550 4456 ntAPPRIS P2 TSL 5 BASIC18.98■□□□□ 0.63
CTCFP49711 GCFC2-202ENST00000409857 2516 ntTSL 5 BASIC18.98■□□□□ 0.63
CTCFP49711 NBL1-201ENST00000289749 731 ntAPPRIS ALT2 TSL 2 BASIC18.98■□□□□ 0.63
CTCFP49711 KCNK7-201ENST00000340313 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
CTCFP49711 THEG-202ENST00000346878 1211 ntAPPRIS ALT2 TSL 2 BASIC18.98■□□□□ 0.63
CTCFP49711 CYB561D1-202ENST00000369868 1085 ntTSL 2 BASIC18.98■□□□□ 0.63
CTCFP49711 HILPDA-202ENST00000435296 785 ntAPPRIS P1 TSL 2 BASIC18.98■□□□□ 0.63
CTCFP49711 AL136361.1-201ENST00000435429 506 ntTSL 3 BASIC18.98■□□□□ 0.63
CTCFP49711 AC005077.2-201ENST00000449786 690 ntBASIC18.98■□□□□ 0.63
CTCFP49711 RHOA-206ENST00000454011 889 ntTSL 2 BASIC18.98■□□□□ 0.63
CTCFP49711 RN7SL769P-201ENST00000469386 295 ntBASIC18.98■□□□□ 0.63
CTCFP49711 AC011365.2-201ENST00000520041 810 ntTSL 5 BASIC18.98■□□□□ 0.63
CTCFP49711 RPL27A-202ENST00000524496 558 ntTSL 3 BASIC18.98■□□□□ 0.63
CTCFP49711 IL32-211ENST00000525643 1272 ntAPPRIS P4 TSL 1 (best) BASIC18.98■□□□□ 0.63
CTCFP49711 IL32-213ENST00000528163 950 ntAPPRIS P4 TSL 2 BASIC18.98■□□□□ 0.63
CTCFP49711 AC131009.1-201ENST00000539078 426 ntTSL 5 BASIC18.98■□□□□ 0.63
CTCFP49711 AC087612.1-201ENST00000560238 658 ntTSL 5 BASIC18.98■□□□□ 0.63
CTCFP49711 AP001005.4-201ENST00000572530 387 ntTSL 3 BASIC18.98■□□□□ 0.63
CTCFP49711 AC068152.1-201ENST00000575930 685 ntTSL 5 BASIC18.98■□□□□ 0.63
CTCFP49711 AC124287.1-201ENST00000582249 838 ntTSL 3 BASIC18.98■□□□□ 0.63
CTCFP49711 PLA2G4C-AS1-201ENST00000596552 568 ntTSL 3 BASIC18.98■□□□□ 0.63
CTCFP49711 MRNIP-225ENST00000610475 810 ntTSL 5 BASIC18.98■□□□□ 0.63
CTCFP49711 ELOA3C-201ENST00000620688 1218 ntAPPRIS P1 BASIC18.98■□□□□ 0.63
CTCFP49711 FP565260.6-205ENST00000624120 898 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
CTCFP49711 DBI-212ENST00000627305 620 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
CTCFP49711 AC008969.1-203ENST00000313957 1897 ntTSL 2 BASIC18.98■□□□□ 0.63
CTCFP49711 ZNF446-207ENST00000610298 1869 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
CTCFP49711 FBXL7-202ENST00000504595 4562 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
CTCFP49711 MEST-201ENST00000223215 2465 ntAPPRIS P4 TSL 1 (best) BASIC18.98■□□□□ 0.63
CTCFP49711 SLC22A23-203ENST00000406686 5658 ntAPPRIS P2 TSL 5 BASIC18.98■□□□□ 0.63
CTCFP49711 SNAP47-203ENST00000366760 1446 ntAPPRIS ALT2 TSL 2 BASIC18.98■□□□□ 0.63
CTCFP49711 PNMA3-202ENST00000593810 1432 ntAPPRIS P1 BASIC18.98■□□□□ 0.63
CTCFP49711 LSP1-201ENST00000311604 1699 ntAPPRIS P4 TSL 1 (best) BASIC18.98■□□□□ 0.63
CTCFP49711 RGS20-203ENST00000344277 1667 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
CTCFP49711 ZBTB45-202ENST00000594051 2541 ntAPPRIS P1 TSL 2 BASIC18.98■□□□□ 0.63
CTCFP49711 POLR1D-220ENST00000637071 1943 ntTSL 5 BASIC18.98■□□□□ 0.63
CTCFP49711 DUSP13-208ENST00000478873 1335 ntTSL 5 BASIC18.98■□□□□ 0.63
CTCFP49711 COL18A1-204ENST00000400337 5436 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
CTCFP49711 TFEB-206ENST00000403298 2162 ntAPPRIS P1 TSL 5 BASIC18.98■□□□□ 0.63
CTCFP49711 NRG2-205ENST00000361474 3020 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
CTCFP49711 NOMO2-212ENST00000622306 4252 ntAPPRIS P3 TSL 1 (best) BASIC18.97■□□□□ 0.63
CTCFP49711 NDUFV1-223ENST00000532303 1493 ntTSL 2 BASIC18.97■□□□□ 0.63
CTCFP49711 NCCRP1-201ENST00000339852 1978 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
CTCFP49711 TLNRD1-201ENST00000267984 4845 ntAPPRIS P1 BASIC18.97■□□□□ 0.63
CTCFP49711 ARL5A-201ENST00000295087 5326 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
CTCFP49711 KIFC3-203ENST00000445690 3379 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
CTCFP49711 TEFM-205ENST00000581216 1891 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
CTCFP49711 IGSF9B-206ENST00000533871 5050 ntAPPRIS P2 TSL 5 BASIC18.97■□□□□ 0.63
CTCFP49711 RGS10-202ENST00000369103 804 ntAPPRIS P3 TSL 1 (best) BASIC18.97■□□□□ 0.63
CTCFP49711 TAGLN-202ENST00000392951 928 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
CTCFP49711 AC098859.1-201ENST00000502915 1238 ntBASIC18.97■□□□□ 0.63
CTCFP49711 FAM92A-214ENST00000522324 1072 ntTSL 2 BASIC18.97■□□□□ 0.63
CTCFP49711 AC008011.2-201ENST00000538113 792 ntTSL 3 BASIC18.97■□□□□ 0.63
CTCFP49711 NKD2-202ENST00000296849 2155 ntAPPRIS P3 TSL 1 (best) BASIC18.97■□□□□ 0.63
CTCFP49711 MCM3AP-AS1-202ENST00000420074 1947 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
CTCFP49711 MFHAS1-201ENST00000276282 6414 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
CTCFP49711 IL17RC-206ENST00000416074 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
CTCFP49711 LINC00574-201ENST00000420557 2318 ntTSL 2 BASIC18.97■□□□□ 0.63
CTCFP49711 ZNF133-210ENST00000535822 2341 ntTSL 3 BASIC18.97■□□□□ 0.63
CTCFP49711 QKI-205ENST00000392127 7911 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
CTCFP49711 SYDE2-202ENST00000341460 5512 ntAPPRIS P1 TSL 5 BASIC18.97■□□□□ 0.63
CTCFP49711 MIS18BP1-212ENST00000627697 1950 ntTSL 5 BASIC18.97■□□□□ 0.63
CTCFP49711 PARD3-205ENST00000374773 3420 ntTSL 5 BASIC18.97■□□□□ 0.63
CTCFP49711 KLHL33-202ENST00000636854 2394 ntAPPRIS P1 TSL 5 BASIC18.97■□□□□ 0.63
CTCFP49711 TAB2-209ENST00000637181 4230 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
CTCFP49711 AC006504.5-203ENST00000590628 1335 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
CTCFP49711 GTF2H4-201ENST00000259895 1735 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
CTCFP49711 ACTN4-202ENST00000390009 2102 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
CTCFP49711 DBN1-201ENST00000292385 3072 ntAPPRIS P4 TSL 1 (best) BASIC18.97■□□□□ 0.63
CTCFP49711 SLC2A4-202ENST00000424875 1852 ntTSL 2 BASIC18.97■□□□□ 0.63
CTCFP49711 AC138028.6-201ENST00000616106 1482 ntBASIC18.97■□□□□ 0.63
CTCFP49711 PRSS35-201ENST00000369700 2440 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
CTCFP49711 RNFT2-204ENST00000407967 2415 ntTSL 5 BASIC18.96■□□□□ 0.63
CTCFP49711 MST1R-214ENST00000613534 2025 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
CTCFP49711 GNE-201ENST00000377902 2565 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
CTCFP49711 KIAA1324L-207ENST00000444627 3527 ntTSL 5 BASIC18.96■□□□□ 0.63
CTCFP49711 ETV4-205ENST00000545954 1775 ntTSL 2 BASIC18.96■□□□□ 0.63
CTCFP49711 HLA-DQB1-201ENST00000374943 1656 ntBASIC18.96■□□□□ 0.63
CTCFP49711 EIF3B-201ENST00000360876 3055 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
CTCFP49711 C2CD2L-201ENST00000336702 4771 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
CTCFP49711 APOA1-201ENST00000236850 1227 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
CTCFP49711 MYL12B-201ENST00000237500 1210 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
CTCFP49711 NPY-201ENST00000242152 585 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
CTCFP49711 SNURF-201ENST00000338327 331 ntAPPRIS P1 TSL 5 BASIC18.96■□□□□ 0.63
CTCFP49711 APOA1-205ENST00000375329 927 ntTSL 2 BASIC18.96■□□□□ 0.63
CTCFP49711 MPV17-206ENST00000402722 827 ntTSL 3 BASIC18.96■□□□□ 0.63
CTCFP49711 PSTK-202ENST00000405485 1047 ntAPPRIS P2 TSL 2 BASIC18.96■□□□□ 0.63
CTCFP49711 AC114501.1-201ENST00000445949 172 ntBASIC18.96■□□□□ 0.63
CTCFP49711 ARMCX3-AS1-201ENST00000454228 490 ntTSL 3 BASIC18.96■□□□□ 0.63
CTCFP49711 AC090502.1-202ENST00000515416 966 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
CTCFP49711 SCARNA20.5-201ENST00000516991 142 ntBASIC18.96■□□□□ 0.63
CTCFP49711 ADM-202ENST00000524948 584 ntTSL 2 BASIC18.96■□□□□ 0.63
CTCFP49711 RHBDL2-203ENST00000540558 697 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
CTCFP49711 RARRES2P5-201ENST00000564013 466 ntBASIC18.96■□□□□ 0.63
CTCFP49711 DUX4L45-201ENST00000566406 1057 ntBASIC18.96■□□□□ 0.63
CTCFP49711 AC092337.1-201ENST00000568699 1129 ntBASIC18.96■□□□□ 0.63
CTCFP49711 AC022903.1-201ENST00000579327 469 ntTSL 2 BASIC18.96■□□□□ 0.63
CTCFP49711 APMAP-201ENST00000217456 2430 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 40.7 ms