Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 GPC1-201ENST00000264039 3713 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
HNF4AP41235 CTSD-213ENST00000637915 1982 ntAPPRIS ALT2 TSL 5 BASIC16.04■□□□□ 0.16
HNF4AP41235 DOC2GP-204ENST00000639052 2548 ntBASIC16.04■□□□□ 0.16
HNF4AP41235 FADS2-202ENST00000278840 3630 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
HNF4AP41235 PCGF3-213ENST00000620529 1899 ntBASIC16.04■□□□□ 0.16
HNF4AP41235 FCN3-201ENST00000270879 1030 ntAPPRIS P4 TSL 1 (best) BASIC16.04■□□□□ 0.16
HNF4AP41235 MYL6-202ENST00000348108 722 ntAPPRIS ALT1 TSL 3 BASIC16.04■□□□□ 0.16
HNF4AP41235 FCN3-202ENST00000354982 997 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
HNF4AP41235 AFG3L1P-210ENST00000431757 569 ntTSL 4 BASIC16.04■□□□□ 0.16
HNF4AP41235 KRT18P3-201ENST00000451602 1288 ntBASIC16.04■□□□□ 0.16
HNF4AP41235 BX890604.1-208ENST00000490920 726 ntTSL 2 BASIC16.04■□□□□ 0.16
HNF4AP41235 POLD2P1-201ENST00000511220 997 ntBASIC16.04■□□□□ 0.16
HNF4AP41235 TPD52L1-211ENST00000532429 1022 ntTSL 2 BASIC16.04■□□□□ 0.16
HNF4AP41235 AL031432.2-201ENST00000566714 459 ntBASIC16.04■□□□□ 0.16
HNF4AP41235 AL928711.1-201ENST00000570165 459 ntBASIC16.04■□□□□ 0.16
HNF4AP41235 OVCA2-201ENST00000572195 1122 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
HNF4AP41235 AC027601.4-201ENST00000611259 610 ntBASIC16.04■□□□□ 0.16
HNF4AP41235 DNAJB8-AS1-201ENST00000471626 1798 ntTSL 2 BASIC16.04■□□□□ 0.16
HNF4AP41235 SEPT8-204ENST00000378699 2289 ntTSL 5 BASIC16.04■□□□□ 0.16
HNF4AP41235 PRR5-203ENST00000403581 2279 ntTSL 2 BASIC16.04■□□□□ 0.16
HNF4AP41235 TLE3-212ENST00000558201 2766 ntTSL 5 BASIC16.04■□□□□ 0.16
HNF4AP41235 CYP2R1-201ENST00000334636 2235 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
HNF4AP41235 ACSF3-204ENST00000406948 2247 ntAPPRIS P1 TSL 2 BASIC16.04■□□□□ 0.16
HNF4AP41235 C2CD4C-201ENST00000332235 3129 ntAPPRIS P1 TSL 2 BASIC16.04■□□□□ 0.16
HNF4AP41235 LETM2-201ENST00000297720 1693 ntTSL 2 BASIC16.04■□□□□ 0.16
HNF4AP41235 TEAD4-202ENST00000359864 1690 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
HNF4AP41235 NFIX-210ENST00000588228 1692 ntTSL 2 BASIC16.04■□□□□ 0.16
HNF4AP41235 ACP5-212ENST00000592828 1699 ntAPPRIS P1 TSL 5 BASIC16.04■□□□□ 0.16
HNF4AP41235 FOXN1-203ENST00000579795 2145 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
HNF4AP41235 SYNM-201ENST00000328642 3960 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
HNF4AP41235 AL021453.1-201ENST00000333487 2989 ntTSL 2 BASIC16.04■□□□□ 0.16
HNF4AP41235 MTHFR-217ENST00000641820 1569 ntBASIC16.04■□□□□ 0.16
HNF4AP41235 SDCBP2-202ENST00000360779 1519 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
HNF4AP41235 KDM4F-201ENST00000545950 1917 ntAPPRIS P1 BASIC16.04■□□□□ 0.16
HNF4AP41235 MAP2K5-201ENST00000178640 2347 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
HNF4AP41235 C20orf166-AS1-201ENST00000412495 2302 ntTSL 2 BASIC16.03■□□□□ 0.16
HNF4AP41235 AC105760.2-201ENST00000418430 2341 ntTSL 2 BASIC16.03■□□□□ 0.16
HNF4AP41235 MGRN1-201ENST00000262370 3968 ntAPPRIS P3 TSL 1 (best) BASIC16.03■□□□□ 0.16
HNF4AP41235 ZNF446-201ENST00000335841 1889 ntTSL 5 BASIC16.03■□□□□ 0.16
HNF4AP41235 TNFRSF13C-201ENST00000291232 3944 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
HNF4AP41235 CD276-213ENST00000561213 2690 ntAPPRIS ALT2 TSL 2 BASIC16.03■□□□□ 0.16
HNF4AP41235 HMBOX1-212ENST00000558662 1765 ntTSL 5 BASIC16.03■□□□□ 0.16
HNF4AP41235 WASHC2C-202ENST00000359860 4471 ntAPPRIS ALT2 TSL 5 BASIC16.03■□□□□ 0.16
HNF4AP41235 GALNT9-202ENST00000397325 1727 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
HNF4AP41235 OAZ2-207ENST00000560258 1744 ntTSL 5 BASIC16.03■□□□□ 0.16
HNF4AP41235 ZFP41-201ENST00000330701 4797 ntAPPRIS P1 TSL 2 BASIC16.03■□□□□ 0.16
HNF4AP41235 PPP1R16B-201ENST00000299824 6251 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
HNF4AP41235 BCAR1-209ENST00000546196 1340 ntBASIC16.03■□□□□ 0.16
HNF4AP41235 HSP90B1-210ENST00000614327 1338 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
HNF4AP41235 TXNDC11-202ENST00000356957 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
HNF4AP41235 BRCC3-202ENST00000340647 1101 ntAPPRIS P2 TSL 2 BASIC16.03■□□□□ 0.16
HNF4AP41235 PIGU-202ENST00000374820 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
HNF4AP41235 HMGN1-203ENST00000380748 829 ntTSL 3 BASIC16.03■□□□□ 0.16
HNF4AP41235 AGTRAP-205ENST00000400895 786 ntTSL 2 BASIC16.03■□□□□ 0.16
HNF4AP41235 POU5F1P6-201ENST00000466990 990 ntBASIC16.03■□□□□ 0.16
HNF4AP41235 AL133375.1-201ENST00000500590 980 ntTSL 5 BASIC16.03■□□□□ 0.16
HNF4AP41235 RNA5SP416-201ENST00000516838 111 ntBASIC16.03■□□□□ 0.16
HNF4AP41235 AC025162.1-201ENST00000554022 565 ntTSL 4 BASIC16.03■□□□□ 0.16
HNF4AP41235 L2HGDH-205ENST00000555423 841 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
HNF4AP41235 MIR3909-201ENST00000579518 119 ntBASIC16.03■□□□□ 0.16
HNF4AP41235 C18orf21-207ENST00000610527 1059 ntTSL 2 BASIC16.03■□□□□ 0.16
HNF4AP41235 C18orf21-208ENST00000618334 856 ntTSL 3 BASIC16.03■□□□□ 0.16
HNF4AP41235 HTR3E-201ENST00000335304 1912 ntAPPRIS P3 TSL 1 (best) BASIC16.03■□□□□ 0.16
HNF4AP41235 PRMT6-201ENST00000370078 2616 ntAPPRIS P1 BASIC16.03■□□□□ 0.16
HNF4AP41235 GULP1-209ENST00000410051 1595 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
HNF4AP41235 REEP2-211ENST00000613650 1944 ntTSL 5 BASIC16.03■□□□□ 0.16
HNF4AP41235 UBE2G1-204ENST00000572484 1514 ntTSL 5 BASIC16.03■□□□□ 0.16
HNF4AP41235 AL662844.4-201ENST00000606367 2838 ntBASIC16.03■□□□□ 0.16
HNF4AP41235 MARCO-201ENST00000327097 1838 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
HNF4AP41235 DPY19L3-206ENST00000587077 2456 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
HNF4AP41235 TMC5-202ENST00000381414 4755 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
HNF4AP41235 SURF4-208ENST00000613129 3148 ntTSL 2 BASIC16.03■□□□□ 0.16
HNF4AP41235 COG5-203ENST00000393603 5418 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
HNF4AP41235 EIPR1-202ENST00000398659 1795 ntTSL 5 BASIC16.03■□□□□ 0.16
HNF4AP41235 COPS7B-206ENST00000410017 2051 ntTSL 3 BASIC16.03■□□□□ 0.16
HNF4AP41235 CCNY-202ENST00000339497 4630 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
HNF4AP41235 GATA3-201ENST00000346208 2654 ntAPPRIS P3 TSL 1 (best) BASIC16.02■□□□□ 0.16
HNF4AP41235 GMPR2-217ENST00000559104 1719 ntTSL 5 BASIC16.02■□□□□ 0.16
HNF4AP41235 SHISA9-203ENST00000558583 6724 ntAPPRIS P4 TSL 5 BASIC16.02■□□□□ 0.16
HNF4AP41235 RPN1-201ENST00000296255 2314 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
HNF4AP41235 CMTM3-202ENST00000424011 2330 ntAPPRIS P1 TSL 2 BASIC16.02■□□□□ 0.16
HNF4AP41235 PTPRS-205ENST00000588012 5993 ntAPPRIS P3 TSL 1 (best) BASIC16.02■□□□□ 0.16
HNF4AP41235 UBAC2-203ENST00000403766 1375 ntAPPRIS P1 TSL 2 BASIC16.02■□□□□ 0.16
HNF4AP41235 CAPRIN1-207ENST00000529307 2266 ntAPPRIS ALT2 TSL 2 BASIC16.02■□□□□ 0.16
HNF4AP41235 TUBGCP2-204ENST00000417178 4029 ntTSL 2 BASIC16.02■□□□□ 0.16
HNF4AP41235 STKLD1-201ENST00000371957 2825 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
HNF4AP41235 C1orf43-201ENST00000350592 1610 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
HNF4AP41235 CLN3-216ENST00000565316 1318 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
HNF4AP41235 DNAJA3-201ENST00000262375 2763 ntAPPRIS P3 TSL 1 (best) BASIC16.02■□□□□ 0.16
HNF4AP41235 PIAS3-201ENST00000369298 2761 ntTSL 5 BASIC16.02■□□□□ 0.16
HNF4AP41235 IQSEC3-203ENST00000538872 7094 ntAPPRIS ALT2 TSL 5 BASIC16.02■□□□□ 0.16
HNF4AP41235 SOX30-202ENST00000311371 2716 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.16
HNF4AP41235 RAB37-208ENST00000402449 1560 ntAPPRIS P3 TSL 2 BASIC16.02■□□□□ 0.16
HNF4AP41235 PDXP-202ENST00000403251 1571 ntTSL 2 BASIC16.02■□□□□ 0.16
HNF4AP41235 C12orf66-204ENST00000544871 2441 ntTSL 2 BASIC16.02■□□□□ 0.16
HNF4AP41235 HSPB1-201ENST00000248553 909 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
HNF4AP41235 CRADD-201ENST00000332896 1169 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
HNF4AP41235 ICAM2-202ENST00000418105 1252 ntAPPRIS P1 TSL 3 BASIC16.02■□□□□ 0.16
HNF4AP41235 AL049612.1-201ENST00000427017 694 ntTSL 5 BASIC16.02■□□□□ 0.16
HNF4AP41235 RNF212-203ENST00000433731 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 43.1 ms