Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 LENG8-202ENST00000376514 5146 ntAPPRIS ALT2 TSL 5 BASIC18.5■□□□□ 0.55
CIITAP33076 CD300LG-204ENST00000539718 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
CIITAP33076 CBSL-202ENST00000617706 2563 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CIITAP33076 CCNYL1-201ENST00000295414 3767 ntTSL 5 BASIC18.5■□□□□ 0.55
CIITAP33076 CAMKV-217ENST00000620470 1485 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
CIITAP33076 RAN-212ENST00000543796 2661 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CIITAP33076 DMPK-204ENST00000447742 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
CIITAP33076 CACNA1A-214ENST00000614285 8410 ntAPPRIS ALT2 TSL 5 BASIC18.5■□□□□ 0.55
CIITAP33076 HMBS-209ENST00000537841 1559 ntTSL 5 BASIC18.5■□□□□ 0.55
CIITAP33076 CEP120-201ENST00000306467 4900 ntAPPRIS P1 TSL 5 BASIC18.5■□□□□ 0.55
CIITAP33076 ADAM8-205ENST00000485491 2441 ntTSL 2 BASIC18.5■□□□□ 0.55
CIITAP33076 C12orf66-204ENST00000544871 2441 ntTSL 2 BASIC18.5■□□□□ 0.55
CIITAP33076 F3-202ENST00000370207 1879 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
CIITAP33076 LRP4-201ENST00000378623 8076 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CIITAP33076 CLCN2-205ENST00000457512 2820 ntAPPRIS ALT2 TSL 2 BASIC18.5■□□□□ 0.55
CIITAP33076 SIT1-204ENST00000618781 1317 ntAPPRIS ALT2 TSL 5 BASIC18.49■□□□□ 0.55
CIITAP33076 THOC5-202ENST00000397871 2560 ntAPPRIS P1 TSL 5 BASIC18.49■□□□□ 0.55
CIITAP33076 MAP4K1-201ENST00000396857 2653 ntAPPRIS P1 TSL 5 BASIC18.49■□□□□ 0.55
CIITAP33076 CALHM2-202ENST00000369788 1843 ntAPPRIS P1 TSL 2 BASIC18.49■□□□□ 0.55
CIITAP33076 CACNB3-203ENST00000540990 1814 ntTSL 2 BASIC18.49■□□□□ 0.55
CIITAP33076 CCDC116-203ENST00000607942 1913 ntAPPRIS ALT2 TSL 2 BASIC18.49■□□□□ 0.55
CIITAP33076 AC110813.1-201ENST00000507934 2209 ntTSL 2 BASIC18.49■□□□□ 0.55
CIITAP33076 HRAT92-201ENST00000452622 3506 ntTSL 2 BASIC18.49■□□□□ 0.55
CIITAP33076 TMEM219-201ENST00000279396 999 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CIITAP33076 POP7-201ENST00000303151 927 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CIITAP33076 MRPL28-202ENST00000389675 865 ntAPPRIS P1 TSL 3 BASIC18.49■□□□□ 0.55
CIITAP33076 CLTA-203ENST00000396603 1090 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
CIITAP33076 TAS2R41-201ENST00000408916 924 ntAPPRIS P1 BASIC18.49■□□□□ 0.55
CIITAP33076 CNN2P2-201ENST00000443536 909 ntBASIC18.49■□□□□ 0.55
CIITAP33076 CNN2P3-201ENST00000450201 906 ntBASIC18.49■□□□□ 0.55
CIITAP33076 OST4-203ENST00000456793 561 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CIITAP33076 AC012173.1-201ENST00000567942 430 ntTSL 3 BASIC18.49■□□□□ 0.55
CIITAP33076 AC024267.1-201ENST00000582320 895 ntBASIC18.49■□□□□ 0.55
CIITAP33076 FSTL3-202ENST00000588773 746 ntTSL 2 BASIC18.49■□□□□ 0.55
CIITAP33076 AL365330.1-201ENST00000607459 531 ntBASIC18.49■□□□□ 0.55
CIITAP33076 C18orf21-207ENST00000610527 1059 ntTSL 2 BASIC18.49■□□□□ 0.55
CIITAP33076 C18orf21-208ENST00000618334 856 ntTSL 3 BASIC18.49■□□□□ 0.55
CIITAP33076 AL136317.3-201ENST00000618497 906 ntBASIC18.49■□□□□ 0.55
CIITAP33076 CBR3-AS1-216ENST00000624883 564 ntTSL 3 BASIC18.49■□□□□ 0.55
CIITAP33076 WDR61-201ENST00000267973 1387 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CIITAP33076 AC090286.1-201ENST00000354432 1489 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
CIITAP33076 ALDOA-226ENST00000569798 1499 ntTSL 2 BASIC18.49■□□□□ 0.55
CIITAP33076 KRT35-202ENST00000393989 1670 ntAPPRIS P1 TSL 5 BASIC18.49■□□□□ 0.55
CIITAP33076 REXO1L8P-201ENST00000604378 1897 ntBASIC18.49■□□□□ 0.55
CIITAP33076 PCDH7-201ENST00000361762 6403 ntAPPRIS P3 TSL 1 (best) BASIC18.49■□□□□ 0.55
CIITAP33076 PLXDC2-202ENST00000377242 2822 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
CIITAP33076 MAN1C1-201ENST00000263979 2627 ntTSL 5 BASIC18.49■□□□□ 0.55
CIITAP33076 ANTXRL-205ENST00000620264 2206 ntAPPRIS P2 TSL 5 BASIC18.49■□□□□ 0.55
CIITAP33076 ESR2-206ENST00000553796 1634 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
CIITAP33076 EIF1B-AS1-206ENST00000631175 1303 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
CIITAP33076 PACSIN2-205ENST00000407585 3080 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
CIITAP33076 ARNTL-201ENST00000389707 2776 ntAPPRIS P3 TSL 1 (best) BASIC18.48■□□□□ 0.55
CIITAP33076 NRP1-203ENST00000374821 1988 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
CIITAP33076 NCOA5-201ENST00000290231 3220 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CIITAP33076 RHOF-201ENST00000267205 3009 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CIITAP33076 SEPHS1-201ENST00000327347 3273 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CIITAP33076 RPL21-203ENST00000319826 806 ntAPPRIS P1 TSL 2 BASIC18.48■□□□□ 0.55
CIITAP33076 SNHG11-201ENST00000359074 1031 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
CIITAP33076 AC078942.1-201ENST00000448698 589 ntTSL 4 BASIC18.48■□□□□ 0.55
CIITAP33076 LAMTOR4-206ENST00000473459 720 ntTSL 2 BASIC18.48■□□□□ 0.55
CIITAP33076 AC067863.1-201ENST00000494933 530 ntBASIC18.48■□□□□ 0.55
CIITAP33076 RNA5SP410-201ENST00000516285 106 ntBASIC18.48■□□□□ 0.55
CIITAP33076 PFN1-203ENST00000574872 1173 ntTSL 2 BASIC18.48■□□□□ 0.55
CIITAP33076 MIR4321-201ENST00000592276 80 ntBASIC18.48■□□□□ 0.55
CIITAP33076 COQ4-205ENST00000609948 956 ntTSL 2 BASIC18.48■□□□□ 0.55
CIITAP33076 AC007967.4-201ENST00000614700 386 ntBASIC18.48■□□□□ 0.55
CIITAP33076 GOLGA2-215ENST00000639983 1038 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
CIITAP33076 SERAC1-201ENST00000367101 1907 ntTSL 5 BASIC18.48■□□□□ 0.55
CIITAP33076 AL591845.1-201ENST00000373137 1838 ntTSL 2 BASIC18.48■□□□□ 0.55
CIITAP33076 TSC22D4-201ENST00000300181 2383 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CIITAP33076 PHF20L1-220ENST00000622263 3375 ntAPPRIS P1 TSL 5 BASIC18.48■□□□□ 0.55
CIITAP33076 LIN54-204ENST00000505397 2742 ntAPPRIS P1 TSL 5 BASIC18.48■□□□□ 0.55
CIITAP33076 GIT1-203ENST00000394869 3711 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
CIITAP33076 KREMEN1-203ENST00000407188 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
CIITAP33076 TIA1-206ENST00000445587 1440 ntTSL 5 BASIC18.48■□□□□ 0.55
CIITAP33076 BNIP2-213ENST00000612191 2515 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
CIITAP33076 BRI3BP-201ENST00000341446 6648 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CIITAP33076 TUBB3P1-201ENST00000405796 1332 ntBASIC18.48■□□□□ 0.55
CIITAP33076 ST3GAL5-229ENST00000638986 2331 ntAPPRIS ALT2 TSL 5 BASIC18.48■□□□□ 0.55
CIITAP33076 C17orf100-201ENST00000542475 1756 ntAPPRIS P1 BASIC18.47■□□□□ 0.55
CIITAP33076 NIPAL2-201ENST00000341166 4581 ntTSL 2 BASIC18.47■□□□□ 0.55
CIITAP33076 USP4-201ENST00000265560 3126 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CIITAP33076 GSKIP-207ENST00000556095 3834 ntAPPRIS P1 TSL 2 BASIC18.47■□□□□ 0.55
CIITAP33076 SFT2D3-201ENST00000310981 3735 ntAPPRIS P1 BASIC18.47■□□□□ 0.55
CIITAP33076 SH2B3-202ENST00000538307 2062 ntTSL 2 BASIC18.47■□□□□ 0.55
CIITAP33076 IPMK-201ENST00000373935 6133 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CIITAP33076 SMARCA4-203ENST00000429416 5691 ntTSL 2 BASIC18.47■□□□□ 0.55
CIITAP33076 LCE1A-201ENST00000335123 422 ntAPPRIS P1 BASIC18.47■□□□□ 0.55
CIITAP33076 NKAIN2-201ENST00000368416 1106 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
CIITAP33076 PNMT-202ENST00000394246 821 ntTSL 2 BASIC18.47■□□□□ 0.55
CIITAP33076 ST7-OT4-203ENST00000466018 894 ntTSL 5 BASIC18.47■□□□□ 0.55
CIITAP33076 IQSEC2-204ENST00000485377 835 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
CIITAP33076 SWI5-205ENST00000495313 466 ntAPPRIS ALT2 TSL 3 BASIC18.47■□□□□ 0.55
CIITAP33076 AC020659.2-201ENST00000510176 585 ntTSL 4 BASIC18.47■□□□□ 0.55
CIITAP33076 UBE2V2-201ENST00000517630 612 ntTSL 4 BASIC18.47■□□□□ 0.55
CIITAP33076 CSRP2-202ENST00000546966 754 ntAPPRIS P1 TSL 3 BASIC18.47■□□□□ 0.55
CIITAP33076 AC027796.2-201ENST00000575326 344 ntBASIC18.47■□□□□ 0.55
CIITAP33076 MIR4453-201ENST00000584019 89 ntBASIC18.47■□□□□ 0.55
CIITAP33076 ALKBH7-203ENST00000599849 556 ntTSL 3 BASIC18.47■□□□□ 0.55
CIITAP33076 LAMTOR5-208ENST00000614544 846 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 31.4 ms