Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 ITM2C-201ENST00000326407 1888 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
COL3A1P02461 BTN3A1-204ENST00000425234 1882 ntTSL 2 BASIC21.5■■□□□ 1.03
COL3A1P02461 LINC01301-205ENST00000531654 1347 ntTSL 5 BASIC21.49■■□□□ 1.03
COL3A1P02461 SMIM5-201ENST00000375215 1546 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
COL3A1P02461 GSKIP-201ENST00000438650 2140 ntAPPRIS P1 TSL 2 BASIC21.49■■□□□ 1.03
COL3A1P02461 LINC00612-201ENST00000538094 2213 ntTSL 2 BASIC21.49■■□□□ 1.03
COL3A1P02461 CCDC154-202ENST00000409671 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC21.49■■□□□ 1.03
COL3A1P02461 CCDC83-201ENST00000280245 2358 ntAPPRIS P3 TSL 2 BASIC21.49■■□□□ 1.03
COL3A1P02461 TMEM5-205ENST00000537373 1966 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
COL3A1P02461 DDOST-206ENST00000602624 1963 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
COL3A1P02461 ACSM1-204ENST00000520010 1894 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
COL3A1P02461 ESR2-209ENST00000555278 1883 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
COL3A1P02461 ZNF593-202ENST00000374266 675 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
COL3A1P02461 ADM2-201ENST00000395737 535 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
COL3A1P02461 AC073283.1-201ENST00000421759 860 ntTSL 3 BASIC21.49■■□□□ 1.03
COL3A1P02461 TSPY16P-201ENST00000449843 468 ntBASIC21.49■■□□□ 1.03
COL3A1P02461 HNRNPUP1-201ENST00000554987 333 ntBASIC21.49■■□□□ 1.03
COL3A1P02461 LINC00207-204ENST00000605505 666 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
COL3A1P02461 LINC02084-201ENST00000606069 1096 ntBASIC21.49■■□□□ 1.03
COL3A1P02461 AL033527.5-202ENST00000641632 1098 ntBASIC21.49■■□□□ 1.03
COL3A1P02461 ZNF84-208ENST00000539354 3237 ntAPPRIS P2 TSL 1 (best) BASIC21.49■■□□□ 1.03
COL3A1P02461 AP1AR-201ENST00000274000 2902 ntAPPRIS P3 TSL 1 (best) BASIC21.49■■□□□ 1.03
COL3A1P02461 PAK4-202ENST00000358301 2739 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
COL3A1P02461 CDC25A-201ENST00000302506 3783 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
COL3A1P02461 PRKCSH-217ENST00000592741 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC21.49■■□□□ 1.03
COL3A1P02461 SEPHS1-201ENST00000327347 3273 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
COL3A1P02461 RPS28-203ENST00000600659 1326 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
COL3A1P02461 TPD52L2-209ENST00000611972 2197 ntTSL 3 BASIC21.49■■□□□ 1.03
COL3A1P02461 RHOF-201ENST00000267205 3009 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
COL3A1P02461 AC100861.1-202ENST00000500853 1970 ntTSL 2 BASIC21.48■■□□□ 1.03
COL3A1P02461 ASAH1-240ENST00000636997 1774 ntTSL 5 BASIC21.48■■□□□ 1.03
COL3A1P02461 OLA1-202ENST00000344357 1656 ntTSL 2 BASIC21.48■■□□□ 1.03
COL3A1P02461 PRPF31-201ENST00000321030 2126 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
COL3A1P02461 ZNF48-205ENST00000613509 3339 ntAPPRIS P1 TSL 2 BASIC21.48■■□□□ 1.03
COL3A1P02461 HACD3-206ENST00000565299 1465 ntTSL 5 BASIC21.48■■□□□ 1.03
COL3A1P02461 MECR-201ENST00000263702 1353 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
COL3A1P02461 SPAG7-201ENST00000206020 1058 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
COL3A1P02461 GUK1-210ENST00000391865 990 ntAPPRIS ALT1 TSL 1 (best) BASIC21.48■■□□□ 1.03
COL3A1P02461 SNCA-205ENST00000394991 1290 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
COL3A1P02461 LRP5L-201ENST00000402785 1193 ntAPPRIS P2 TSL 1 (best) BASIC21.48■■□□□ 1.03
COL3A1P02461 INGX-202ENST00000489074 768 ntBASIC21.48■■□□□ 1.03
COL3A1P02461 NDUFAF2-203ENST00000511107 586 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
COL3A1P02461 CNOT8-210ENST00000519404 945 ntTSL 2 BASIC21.48■■□□□ 1.03
COL3A1P02461 CNOT8-214ENST00000520671 923 ntTSL 2 BASIC21.48■■□□□ 1.03
COL3A1P02461 CNOT8-218ENST00000521583 1151 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
COL3A1P02461 AC124067.4-202ENST00000522471 397 ntTSL 3 BASIC21.48■■□□□ 1.03
COL3A1P02461 AC004846.2-201ENST00000556578 777 ntTSL 3 BASIC21.48■■□□□ 1.03
COL3A1P02461 TGIF2-C20orf24-201ENST00000558530 918 ntAPPRIS P1 TSL 3 BASIC21.48■■□□□ 1.03
COL3A1P02461 AC044860.1-202ENST00000559481 777 ntBASIC21.48■■□□□ 1.03
COL3A1P02461 SSH2-210ENST00000582084 560 ntTSL 3 BASIC21.48■■□□□ 1.03
COL3A1P02461 AC073263.1-201ENST00000616370 494 ntTSL 3 BASIC21.48■■□□□ 1.03
COL3A1P02461 DXO-203ENST00000375356 1533 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
COL3A1P02461 ATP6V0E2-212ENST00000611515 2565 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
COL3A1P02461 PCBP1-201ENST00000303577 1750 ntAPPRIS P1 BASIC21.48■■□□□ 1.03
COL3A1P02461 AKR7L-202ENST00000429712 1313 ntAPPRIS P5 TSL 1 (best) BASIC21.48■■□□□ 1.03
COL3A1P02461 HPS1-202ENST00000338546 1580 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
COL3A1P02461 ULK2-202ENST00000395544 6010 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
COL3A1P02461 AP001282.1-201ENST00000531301 1499 ntBASIC21.47■■□□□ 1.03
COL3A1P02461 ARL14EP-201ENST00000282032 2430 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
COL3A1P02461 IQCE-212ENST00000476665 2400 ntAPPRIS ALT2 TSL 2 BASIC21.47■■□□□ 1.03
COL3A1P02461 TLX1-201ENST00000370196 2906 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
COL3A1P02461 PGC-202ENST00000373025 1371 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
COL3A1P02461 ZNF652-202ENST00000430262 4701 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
COL3A1P02461 AC134407.2-201ENST00000625089 1978 ntBASIC21.47■■□□□ 1.03
COL3A1P02461 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
COL3A1P02461 CENPN-202ENST00000305850 2481 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
COL3A1P02461 AC074338.1-201ENST00000416825 156 ntBASIC21.47■■□□□ 1.03
COL3A1P02461 AC114501.2-201ENST00000439631 535 ntBASIC21.47■■□□□ 1.03
COL3A1P02461 STOM-203ENST00000538954 1257 ntTSL 5 BASIC21.47■■□□□ 1.03
COL3A1P02461 HIST1H3D-202ENST00000635200 948 ntAPPRIS P1 TSL 3 BASIC21.47■■□□□ 1.03
COL3A1P02461 NR2E3-204ENST00000621736 2032 ntTSL 2 BASIC21.47■■□□□ 1.03
COL3A1P02461 DTD2-202ENST00000356180 1400 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
COL3A1P02461 LYNX1-204ENST00000614491 4708 ntAPPRIS P1 TSL 2 BASIC21.47■■□□□ 1.03
COL3A1P02461 TDRP-201ENST00000324079 3395 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
COL3A1P02461 SLFNL1-201ENST00000302946 1951 ntAPPRIS P3 TSL 1 (best) BASIC21.47■■□□□ 1.03
COL3A1P02461 CHAT-203ENST00000351556 2286 ntAPPRIS ALT2 TSL 5 BASIC21.47■■□□□ 1.03
COL3A1P02461 SLC12A2-201ENST00000262461 6885 ntAPPRIS P3 TSL 1 (best) BASIC21.47■■□□□ 1.03
COL3A1P02461 AC005622.1-202ENST00000637093 1543 ntTSL 5 BASIC21.46■■□□□ 1.03
COL3A1P02461 ANKMY1-202ENST00000361678 2499 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
COL3A1P02461 CDK4-201ENST00000257904 2076 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
COL3A1P02461 LCE5A-201ENST00000334269 819 ntAPPRIS P1 TSL 3 BASIC21.46■■□□□ 1.03
COL3A1P02461 VCX3A-201ENST00000381089 995 ntAPPRIS P2 TSL 1 (best) BASIC21.46■■□□□ 1.03
COL3A1P02461 AC007388.1-210ENST00000415640 458 ntTSL 3 BASIC21.46■■□□□ 1.03
COL3A1P02461 RASL12-203ENST00000434605 982 ntTSL 2 BASIC21.46■■□□□ 1.03
COL3A1P02461 RNASEH1-AS1-202ENST00000438436 1218 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
COL3A1P02461 SERBP1P3-201ENST00000459980 809 ntBASIC21.46■■□□□ 1.03
COL3A1P02461 FAM92A-214ENST00000522324 1072 ntTSL 2 BASIC21.46■■□□□ 1.03
COL3A1P02461 PSMD7-204ENST00000567958 692 ntTSL 3 BASIC21.46■■□□□ 1.03
COL3A1P02461 LINC02560-201ENST00000596379 459 ntBASIC21.46■■□□□ 1.03
COL3A1P02461 KLK15-203ENST00000596931 692 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
COL3A1P02461 KLK15-204ENST00000598239 855 ntAPPRIS P3 TSL 1 (best) BASIC21.46■■□□□ 1.03
COL3A1P02461 AL391069.4-201ENST00000609583 481 ntBASIC21.46■■□□□ 1.03
COL3A1P02461 CLCNKB-201ENST00000375667 2129 ntTSL 2 BASIC21.46■■□□□ 1.03
COL3A1P02461 SLC9A6-202ENST00000370698 4631 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
COL3A1P02461 FAM92B-201ENST00000539556 1898 ntAPPRIS P2 TSL 5 BASIC21.46■■□□□ 1.03
COL3A1P02461 TNFAIP2-209ENST00000560869 4683 ntAPPRIS P1 TSL 5 BASIC21.46■■□□□ 1.03
COL3A1P02461 PRDM5-202ENST00000394435 2492 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
COL3A1P02461 CABLES1-201ENST00000256925 5002 ntAPPRIS P4 TSL 1 (best) BASIC21.46■■□□□ 1.03
COL3A1P02461 LDB3-208ENST00000623007 1664 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
COL3A1P02461 FOXN1-203ENST00000579795 2145 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
Retrieved 100 of 98,524 protein–RNA pairs in 27.5 ms