Protein–RNA interactions for Protein: P02452

COL1A1, Collagen alpha-1(I) chain, humanhuman

Predicted RBP Predictions only

Length 1,464 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL1A1P02452 IFITM2-204ENST00000533141 588 ntAPPRIS ALT2 TSL 4 BASIC19.61■□□□□ 0.73
COL1A1P02452 AC020978.5-201ENST00000564147 533 ntTSL 4 BASIC19.61■□□□□ 0.73
COL1A1P02452 AL033527.5-202ENST00000641632 1098 ntBASIC19.61■□□□□ 0.73
COL1A1P02452 THAP12-201ENST00000260045 3300 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
COL1A1P02452 SLC39A13-201ENST00000354884 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
COL1A1P02452 PRRX1-202ENST00000367760 2217 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
COL1A1P02452 NR2E3-204ENST00000621736 2032 ntTSL 2 BASIC19.61■□□□□ 0.73
COL1A1P02452 BRIX1-201ENST00000336767 1926 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
COL1A1P02452 KCNC4-204ENST00000438661 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
COL1A1P02452 UBXN11-205ENST00000374221 1792 ntAPPRIS P4 TSL 2 BASIC19.61■□□□□ 0.73
COL1A1P02452 CRTC2-202ENST00000368630 1635 ntTSL 2 BASIC19.61■□□□□ 0.73
COL1A1P02452 ZNF302-201ENST00000423823 2590 ntAPPRIS P3 TSL 1 (best) BASIC19.61■□□□□ 0.73
COL1A1P02452 AL592424.1-201ENST00000563624 1536 ntBASIC19.61■□□□□ 0.73
COL1A1P02452 VIPR1-204ENST00000438259 2427 ntTSL 2 BASIC19.61■□□□□ 0.73
COL1A1P02452 PCK2-205ENST00000558096 2433 ntTSL 2 BASIC19.61■□□□□ 0.73
COL1A1P02452 AIFM3-202ENST00000399167 2387 ntAPPRIS P3 TSL 2 BASIC19.61■□□□□ 0.73
COL1A1P02452 AIFM3-207ENST00000440238 2368 ntAPPRIS P3 TSL 1 (best) BASIC19.61■□□□□ 0.73
COL1A1P02452 AC132872.2-201ENST00000581303 2368 ntTSL 5 BASIC19.61■□□□□ 0.73
COL1A1P02452 PTOV1-219ENST00000601638 1413 ntTSL 5 BASIC19.61■□□□□ 0.73
COL1A1P02452 MGME1-203ENST00000377710 2336 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
COL1A1P02452 MAPT-215ENST00000574436 1326 ntAPPRIS ALT2 TSL 5 BASIC19.61■□□□□ 0.73
COL1A1P02452 ATP6AP2-233ENST00000638153 1303 ntAPPRIS ALT2 TSL 5 BASIC19.61■□□□□ 0.73
COL1A1P02452 CCT2-202ENST00000543146 2189 ntTSL 2 BASIC19.61■□□□□ 0.73
COL1A1P02452 TP53BP2-202ENST00000391878 4741 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
COL1A1P02452 ACTA1-201ENST00000366683 1122 ntTSL 5 BASIC19.6■□□□□ 0.73
COL1A1P02452 VCX3B-202ENST00000381032 1171 ntAPPRIS P2 TSL 5 BASIC19.6■□□□□ 0.73
COL1A1P02452 AC087499.6-201ENST00000411576 835 ntBASIC19.6■□□□□ 0.73
COL1A1P02452 GSKIP-201ENST00000438650 2140 ntAPPRIS P1 TSL 2 BASIC19.6■□□□□ 0.73
COL1A1P02452 AL031283.3-201ENST00000439788 727 ntTSL 3 BASIC19.6■□□□□ 0.73
COL1A1P02452 RPL10P19-202ENST00000520582 722 ntTSL 3 BASIC19.6■□□□□ 0.73
COL1A1P02452 NEIL2-207ENST00000528323 998 ntTSL 2 BASIC19.6■□□□□ 0.73
COL1A1P02452 AC091544.3-201ENST00000556424 531 ntTSL 2 BASIC19.6■□□□□ 0.73
COL1A1P02452 AC087392.4-201ENST00000574560 486 ntTSL 3 BASIC19.6■□□□□ 0.73
COL1A1P02452 AL109936.8-201ENST00000641772 604 ntBASIC19.6■□□□□ 0.73
COL1A1P02452 SCARF1-205ENST00000571272 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
COL1A1P02452 ZC3H12A-201ENST00000373087 2684 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
COL1A1P02452 PHF1-202ENST00000374516 2330 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
COL1A1P02452 PARP15-202ENST00000464300 2156 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
COL1A1P02452 ESYT2-206ENST00000613624 2766 ntAPPRIS ALT2 TSL 2 BASIC19.6■□□□□ 0.73
COL1A1P02452 AC005622.1-202ENST00000637093 1543 ntTSL 5 BASIC19.6■□□□□ 0.73
COL1A1P02452 COQ7-201ENST00000321998 2657 ntAPPRIS P3 TSL 1 (best) BASIC19.6■□□□□ 0.73
COL1A1P02452 ELAC2-203ENST00000426905 2671 ntTSL 2 BASIC19.6■□□□□ 0.73
COL1A1P02452 LAPTM4B-201ENST00000445593 3173 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
COL1A1P02452 SH2B3-201ENST00000341259 5406 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
COL1A1P02452 ZNF79-204ENST00000617266 1969 ntTSL 3 BASIC19.6■□□□□ 0.73
COL1A1P02452 CHST8-201ENST00000262622 2479 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
COL1A1P02452 CCDC116-203ENST00000607942 1913 ntAPPRIS ALT2 TSL 2 BASIC19.6■□□□□ 0.73
COL1A1P02452 LETM2-202ENST00000379957 1873 ntAPPRIS ALT2 TSL 5 BASIC19.6■□□□□ 0.73
COL1A1P02452 TSC22D4-201ENST00000300181 2383 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
COL1A1P02452 GTF2H2C-201ENST00000380729 1803 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
COL1A1P02452 NDUFA2-201ENST00000252102 804 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
COL1A1P02452 LCN15-201ENST00000316144 762 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
COL1A1P02452 AL512384.1-201ENST00000406683 331 ntBASIC19.6■□□□□ 0.73
COL1A1P02452 EEF1DP4-201ENST00000446006 880 ntBASIC19.6■□□□□ 0.73
COL1A1P02452 H2AFV-207ENST00000446531 1041 ntTSL 2 BASIC19.6■□□□□ 0.73
COL1A1P02452 AC006001.2-201ENST00000448096 393 ntTSL 3 BASIC19.6■□□□□ 0.73
COL1A1P02452 AL606760.2-202ENST00000452466 524 ntTSL 5 BASIC19.6■□□□□ 0.73
COL1A1P02452 HHEX-203ENST00000492654 808 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
COL1A1P02452 LINC01605-204ENST00000522718 1093 ntTSL 3 BASIC19.6■□□□□ 0.73
COL1A1P02452 MRPL52-211ENST00000555536 451 ntTSL 3 BASIC19.6■□□□□ 0.73
COL1A1P02452 AC106886.1-201ENST00000568660 600 ntBASIC19.6■□□□□ 0.73
COL1A1P02452 TMEM205-208ENST00000587948 688 ntAPPRIS P1 TSL 5 BASIC19.6■□□□□ 0.73
COL1A1P02452 TMEM205-211ENST00000589555 788 ntAPPRIS P1 TSL 2 BASIC19.6■□□□□ 0.73
COL1A1P02452 AC026979.3-201ENST00000607315 403 ntBASIC19.6■□□□□ 0.73
COL1A1P02452 RASA4-202ENST00000449970 2787 ntAPPRIS ALT1 TSL 2 BASIC19.6■□□□□ 0.73
COL1A1P02452 TPM1-201ENST00000267996 1670 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
COL1A1P02452 FAM222B-211ENST00000582266 2613 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
COL1A1P02452 PRSS23-201ENST00000280258 4015 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
COL1A1P02452 ORMDL3-201ENST00000304046 2111 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
COL1A1P02452 GLIPR2-205ENST00000619700 1645 ntTSL 3 BASIC19.59■□□□□ 0.73
COL1A1P02452 ARHGAP33-201ENST00000007510 2545 ntAPPRIS ALT2 TSL 5 BASIC19.59■□□□□ 0.73
COL1A1P02452 CCT7-215ENST00000539919 2031 ntTSL 2 BASIC19.59■□□□□ 0.73
COL1A1P02452 STAC3-206ENST00000554578 1580 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
COL1A1P02452 LCMT2-202ENST00000567039 1545 ntTSL 2 BASIC19.59■□□□□ 0.73
COL1A1P02452 LRRC14-201ENST00000292524 5328 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
COL1A1P02452 HACD3-206ENST00000565299 1465 ntTSL 5 BASIC19.59■□□□□ 0.73
COL1A1P02452 GAPDH-201ENST00000229239 1875 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
COL1A1P02452 TXNDC2-201ENST00000306084 1873 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
COL1A1P02452 SYNE3-202ENST00000553340 2615 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
COL1A1P02452 PKN3-201ENST00000291906 3375 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
COL1A1P02452 CA12-203ENST00000422263 2556 ntTSL 2 BASIC19.59■□□□□ 0.73
COL1A1P02452 BID-201ENST00000317361 2495 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
COL1A1P02452 LINC00323-202ENST00000441268 2095 ntTSL 2 BASIC19.59■□□□□ 0.73
COL1A1P02452 OLA1-202ENST00000344357 1656 ntTSL 2 BASIC19.59■□□□□ 0.73
COL1A1P02452 RNF222-201ENST00000344001 2786 ntAPPRIS P1 BASIC19.59■□□□□ 0.73
COL1A1P02452 DMPK-204ENST00000447742 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
COL1A1P02452 ACTG1-208ENST00000575087 2001 ntAPPRIS P1 TSL 5 BASIC19.59■□□□□ 0.73
COL1A1P02452 SLC18B1-202ENST00000367918 472 ntTSL 5 BASIC19.59■□□□□ 0.73
COL1A1P02452 NAA10-201ENST00000370009 837 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
COL1A1P02452 NAA10-203ENST00000370015 1002 ntTSL 5 BASIC19.59■□□□□ 0.73
COL1A1P02452 ING1-204ENST00000375775 1074 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
COL1A1P02452 AL133456.1-201ENST00000415655 577 ntTSL 4 BASIC19.59■□□□□ 0.73
COL1A1P02452 TEX48-201ENST00000436752 708 ntAPPRIS P1 TSL 5 BASIC19.59■□□□□ 0.73
COL1A1P02452 AL139010.1-201ENST00000454878 894 ntBASIC19.59■□□□□ 0.73
COL1A1P02452 INE1-201ENST00000456273 945 ntBASIC19.59■□□□□ 0.73
COL1A1P02452 SLC35B4-204ENST00000470969 1033 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
COL1A1P02452 AC017083.2-201ENST00000608069 979 ntBASIC19.59■□□□□ 0.73
COL1A1P02452 TEX48-202ENST00000612244 662 ntTSL 3 BASIC19.59■□□□□ 0.73
COL1A1P02452 DPP9-AS1-201ENST00000381796 3071 ntTSL 2 BASIC19.59■□□□□ 0.73
COL1A1P02452 TMEM140-201ENST00000275767 1997 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 75.2 ms