Protein–RNA interactions for Protein: O15551

CLDN3, Claudin-3, humanhuman

Predictions only

Length 220 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN3O15551 ITPA-203ENST00000455664 729 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
CLDN3O15551 AC002116.1-201ENST00000473572 1130 ntTSL 2 BASIC18.01■□□□□ 0.47
CLDN3O15551 SLC50A1-209ENST00000484157 886 ntTSL 3 BASIC18.01■□□□□ 0.47
CLDN3O15551 RPS3A-212ENST00000514682 985 ntTSL 5 BASIC18.01■□□□□ 0.47
CLDN3O15551 AC119403.1-201ENST00000520090 776 ntTSL 5 BASIC18.01■□□□□ 0.47
CLDN3O15551 AC105233.2-201ENST00000523697 349 ntBASIC18.01■□□□□ 0.47
CLDN3O15551 AF228730.5-201ENST00000530288 346 ntBASIC18.01■□□□□ 0.47
CLDN3O15551 AP000842.3-202ENST00000569238 1080 ntBASIC18.01■□□□□ 0.47
CLDN3O15551 AC010615.2-202ENST00000597444 832 ntTSL 3 BASIC18.01■□□□□ 0.47
CLDN3O15551 NKG7-205ENST00000600427 520 ntTSL 3 BASIC18.01■□□□□ 0.47
CLDN3O15551 AL732314.4-201ENST00000627627 515 ntTSL 4 BASIC18.01■□□□□ 0.47
CLDN3O15551 AC020934.3-201ENST00000639810 348 ntAPPRIS P1 TSL 3 BASIC18.01■□□□□ 0.47
CLDN3O15551 AC084121.4-201ENST00000641598 221 ntBASIC18.01■□□□□ 0.47
CLDN3O15551 AF228730.8-201ENST00000642140 221 ntBASIC18.01■□□□□ 0.47
CLDN3O15551 SH2B3-202ENST00000538307 2062 ntTSL 2 BASIC18.01■□□□□ 0.47
CLDN3O15551 NEIL2-204ENST00000455213 2323 ntAPPRIS P1 TSL 5 BASIC18.01■□□□□ 0.47
CLDN3O15551 ZADH2-201ENST00000322342 7732 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CLDN3O15551 RAB11FIP5-205ENST00000486777 6120 ntTSL 5 BASIC18.01■□□□□ 0.47
CLDN3O15551 PAX3-207ENST00000409551 1782 ntAPPRIS ALT1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CLDN3O15551 TCAF2-203ENST00000425618 2448 ntTSL 2 BASIC18.01■□□□□ 0.47
CLDN3O15551 MLXIP-201ENST00000319080 8427 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CLDN3O15551 USHBP1-203ENST00000431146 2136 ntTSL 2 BASIC18.01■□□□□ 0.47
CLDN3O15551 STOX1-204ENST00000399169 3281 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CLDN3O15551 CLIC5-202ENST00000339561 2390 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CLDN3O15551 ARCN1-203ENST00000392859 1709 ntTSL 2 BASIC18.01■□□□□ 0.47
CLDN3O15551 NFATC2-206ENST00000609943 5690 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
CLDN3O15551 DUSP18-206ENST00000407308 1978 ntAPPRIS P1 TSL 5 BASIC18■□□□□ 0.47
CLDN3O15551 AL021453.1-201ENST00000333487 2989 ntTSL 2 BASIC18■□□□□ 0.47
CLDN3O15551 ANTXR1-201ENST00000303714 5859 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CLDN3O15551 RHCE-201ENST00000294413 1591 ntAPPRIS P2 TSL 1 (best) BASIC18■□□□□ 0.47
CLDN3O15551 ZFAND6-201ENST00000261749 1814 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CLDN3O15551 SERINC2-205ENST00000536384 2062 ntTSL 2 BASIC18■□□□□ 0.47
CLDN3O15551 C5orf24-202ENST00000394976 5065 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CLDN3O15551 AP3D1-202ENST00000355272 5034 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
CLDN3O15551 PDS5A-201ENST00000303538 7176 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CLDN3O15551 MAGI3-203ENST00000369615 6508 ntAPPRIS P1 TSL 5 BASIC18■□□□□ 0.47
CLDN3O15551 MAPK15-202ENST00000395107 834 ntTSL 1 (best) BASIC18■□□□□ 0.47
CLDN3O15551 NDUFAF3-203ENST00000395458 808 ntTSL 2 BASIC18■□□□□ 0.47
CLDN3O15551 LBH-203ENST00000404397 543 ntTSL 4 BASIC18■□□□□ 0.47
CLDN3O15551 KRT18P32-201ENST00000424695 1287 ntBASIC18■□□□□ 0.47
CLDN3O15551 AL109741.1-201ENST00000432195 403 ntTSL 2 BASIC18■□□□□ 0.47
CLDN3O15551 TTC28-AS1-213ENST00000434221 972 ntTSL 3 BASIC18■□□□□ 0.47
CLDN3O15551 PMF1-BGLAP-203ENST00000490491 1007 ntAPPRIS P1 TSL 2 BASIC18■□□□□ 0.47
CLDN3O15551 AC024230.1-201ENST00000511431 889 ntTSL 3 BASIC18■□□□□ 0.47
CLDN3O15551 CYB561D1-209ENST00000533024 913 ntTSL 2 BASIC18■□□□□ 0.47
CLDN3O15551 AC018558.2-201ENST00000566562 480 ntTSL 3 BASIC18■□□□□ 0.47
CLDN3O15551 SSH2-211ENST00000590153 570 ntTSL 4 BASIC18■□□□□ 0.47
CLDN3O15551 AC073389.1-201ENST00000595595 795 ntBASIC18■□□□□ 0.47
CLDN3O15551 BCL2L12-206ENST00000598306 510 ntTSL 5 BASIC18■□□□□ 0.47
CLDN3O15551 AC009093.7-201ENST00000623853 1223 ntBASIC18■□□□□ 0.47
CLDN3O15551 TMEM114-205ENST00000624696 560 ntTSL 2 BASIC18■□□□□ 0.47
CLDN3O15551 CACNA1A-214ENST00000614285 8410 ntAPPRIS ALT2 TSL 5 BASIC18■□□□□ 0.47
CLDN3O15551 NTRK1-202ENST00000368196 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
CLDN3O15551 ESR2-205ENST00000358599 1899 ntTSL 2 BASIC18■□□□□ 0.47
CLDN3O15551 HSPA1A-201ENST00000375651 2483 ntAPPRIS P1 BASIC18■□□□□ 0.47
CLDN3O15551 RAB22A-201ENST00000244040 8670 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CLDN3O15551 KDM6B-202ENST00000448097 5422 ntAPPRIS ALT2 TSL 5 BASIC18■□□□□ 0.47
CLDN3O15551 BIN3-201ENST00000276416 1835 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CLDN3O15551 MARCO-201ENST00000327097 1838 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CLDN3O15551 MALT1-202ENST00000348428 9368 ntAPPRIS P4 TSL 1 (best) BASIC18■□□□□ 0.47
CLDN3O15551 ITSN2-201ENST00000355123 6300 ntAPPRIS P4 TSL 1 (best) BASIC18■□□□□ 0.47
CLDN3O15551 FAM83G-202ENST00000388995 5266 ntAPPRIS P1 TSL 5 BASIC18■□□□□ 0.47
CLDN3O15551 KRT18P28-201ENST00000453838 1332 ntBASIC17.99■□□□□ 0.47
CLDN3O15551 SLAIN2-201ENST00000264313 6299 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
CLDN3O15551 SEMA3B-213ENST00000618865 2925 ntAPPRIS P3 TSL 5 BASIC17.99■□□□□ 0.47
CLDN3O15551 HIP1R-201ENST00000253083 4539 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
CLDN3O15551 SACS-AS1-201ENST00000443092 2234 ntTSL 2 BASIC17.99■□□□□ 0.47
CLDN3O15551 FMNL1-201ENST00000328118 2330 ntTSL 2 BASIC17.99■□□□□ 0.47
CLDN3O15551 PSMC3-201ENST00000298852 1544 ntAPPRIS P2 TSL 1 (best) BASIC17.99■□□□□ 0.47
CLDN3O15551 MIB2-217ENST00000504599 3311 ntAPPRIS ALT2 TSL 2 BASIC17.99■□□□□ 0.47
CLDN3O15551 NUP50-203ENST00000407019 2059 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
CLDN3O15551 ZNF281-201ENST00000294740 4891 ntAPPRIS P3 TSL 1 (best) BASIC17.99■□□□□ 0.47
CLDN3O15551 LINC01144-201ENST00000626198 1710 ntBASIC17.99■□□□□ 0.47
CLDN3O15551 SENP1-204ENST00000549518 2260 ntAPPRIS P2 TSL 1 (best) BASIC17.99■□□□□ 0.47
CLDN3O15551 GLS2-216ENST00000610413 2296 ntTSL 5 BASIC17.99■□□□□ 0.47
CLDN3O15551 FAM58DP-201ENST00000428076 619 ntBASIC17.99■□□□□ 0.47
CLDN3O15551 AL121832.1-203ENST00000433121 475 ntTSL 3 BASIC17.99■□□□□ 0.47
CLDN3O15551 IQCF3-204ENST00000446775 1241 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
CLDN3O15551 AP001471.1-201ENST00000454245 672 ntTSL 3 BASIC17.99■□□□□ 0.47
CLDN3O15551 AC108010.1-201ENST00000605862 1107 ntTSL 5 BASIC17.99■□□□□ 0.47
CLDN3O15551 CD1E-213ENST00000444681 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC17.99■□□□□ 0.47
CLDN3O15551 COL4A3BP-203ENST00000380494 5651 ntTSL 2 BASIC17.99■□□□□ 0.47
CLDN3O15551 CGREF1-205ENST00000404694 1376 ntAPPRIS ALT2 TSL 2 BASIC17.99■□□□□ 0.47
CLDN3O15551 CLEC17A-202ENST00000417570 1399 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
CLDN3O15551 SFRP2-201ENST00000274063 2032 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
CLDN3O15551 C10orf107-201ENST00000330194 1685 ntAPPRIS P2 TSL 1 (best) BASIC17.99■□□□□ 0.47
CLDN3O15551 TPM1-219ENST00000559397 1655 ntTSL 2 BASIC17.99■□□□□ 0.47
CLDN3O15551 TMEM127-202ENST00000432959 3099 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
CLDN3O15551 COMMD6-203ENST00000377615 1793 ntAPPRIS P1 TSL 5 BASIC17.99■□□□□ 0.47
CLDN3O15551 WASF1-206ENST00000392588 3122 ntAPPRIS P1 TSL 5 BASIC17.98■□□□□ 0.47
CLDN3O15551 VAV2-202ENST00000371851 5101 ntAPPRIS ALT2 TSL 5 BASIC17.98■□□□□ 0.47
CLDN3O15551 POLR2J4-203ENST00000326391 1422 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
CLDN3O15551 LAT2-204ENST00000398475 2453 ntAPPRIS P2 TSL 1 (best) BASIC17.98■□□□□ 0.47
CLDN3O15551 MEIS3-206ENST00000559524 1828 ntAPPRIS P3 TSL 2 BASIC17.98■□□□□ 0.47
CLDN3O15551 CACNA1A-253ENST00000637927 6847 ntAPPRIS ALT2 TSL 5 BASIC17.98■□□□□ 0.47
CLDN3O15551 GOLGA2-213ENST00000610329 2212 ntTSL 2 BASIC17.98■□□□□ 0.47
CLDN3O15551 MUL1-201ENST00000264198 2438 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
CLDN3O15551 AP000347.2-202ENST00000421064 3041 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
CLDN3O15551 AMACR-202ENST00000382068 862 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
CLDN3O15551 CBR1-202ENST00000399191 838 ntTSL 3 BASIC17.98■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 43.4 ms