Protein–RNA interactions for Protein: H3BT56

CHKB-CPT1B, CHKB-CPT1B readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 60 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHKB-CPT1BH3BT56 PLEKHM1-201ENST00000430334 5263 ntAPPRIS P1 TSL 1 (best) BASIC9.14□□□□□ -0.95
CHKB-CPT1BH3BT56 CORO6-201ENST00000345068 2603 ntAPPRIS P2 TSL 5 BASIC9.14□□□□□ -0.95
CHKB-CPT1BH3BT56 ZNF773-205ENST00000599847 5832 ntTSL 2 BASIC9.14□□□□□ -0.95
CHKB-CPT1BH3BT56 TIAM2-203ENST00000360366 5771 ntTSL 5 BASIC9.14□□□□□ -0.95
CHKB-CPT1BH3BT56 TFE3-201ENST00000315869 3415 ntAPPRIS P1 TSL 1 (best) BASIC9.14□□□□□ -0.95
CHKB-CPT1BH3BT56 DNAJB1-201ENST00000254322 2264 ntAPPRIS P1 TSL 1 (best) BASIC9.14□□□□□ -0.95
CHKB-CPT1BH3BT56 CHAT-203ENST00000351556 2286 ntAPPRIS ALT2 TSL 5 BASIC9.14□□□□□ -0.95
CHKB-CPT1BH3BT56 TNFRSF1B-201ENST00000376259 3683 ntAPPRIS P1 TSL 1 (best) BASIC9.13□□□□□ -0.95
CHKB-CPT1BH3BT56 GALC-206ENST00000544807 2528 ntTSL 2 BASIC9.13□□□□□ -0.95
CHKB-CPT1BH3BT56 ZZEF1-201ENST00000381638 11456 ntAPPRIS P1 TSL 1 (best) BASIC9.13□□□□□ -0.95
CHKB-CPT1BH3BT56 AUP1-201ENST00000377526 1695 ntAPPRIS P1 TSL 1 (best) BASIC9.13□□□□□ -0.95
CHKB-CPT1BH3BT56 WBP2-201ENST00000254806 1944 ntAPPRIS P2 TSL 1 (best) BASIC9.13□□□□□ -0.95
CHKB-CPT1BH3BT56 SPATA2-202ENST00000422556 4138 ntAPPRIS P1 TSL 2 BASIC9.13□□□□□ -0.95
CHKB-CPT1BH3BT56 HSPA8-224ENST00000534624 2463 ntAPPRIS P1 TSL 1 (best) BASIC9.13□□□□□ -0.95
CHKB-CPT1BH3BT56 PCDH12-201ENST00000231484 6562 ntAPPRIS P1 TSL 1 (best) BASIC9.13□□□□□ -0.95
CHKB-CPT1BH3BT56 CAB39-201ENST00000258418 3826 ntAPPRIS P1 TSL 1 (best) BASIC9.13□□□□□ -0.95
CHKB-CPT1BH3BT56 ASIC4-202ENST00000358078 2741 ntAPPRIS ALT2 TSL 5 BASIC9.13□□□□□ -0.95
CHKB-CPT1BH3BT56 CCR7-201ENST00000246657 2173 ntAPPRIS P1 TSL 1 (best) BASIC9.13□□□□□ -0.95
CHKB-CPT1BH3BT56 TCOF1-207ENST00000504761 4467 ntAPPRIS ALT2 TSL 1 (best) BASIC9.13□□□□□ -0.95
CHKB-CPT1BH3BT56 APBB1-201ENST00000299402 2636 ntAPPRIS P3 TSL 5 BASIC9.13□□□□□ -0.95
CHKB-CPT1BH3BT56 APBB1-202ENST00000311051 2619 ntAPPRIS P3 TSL 1 (best) BASIC9.13□□□□□ -0.95
CHKB-CPT1BH3BT56 SAAL1-202ENST00000524803 1582 ntAPPRIS P2 TSL 1 (best) BASIC9.13□□□□□ -0.95
CHKB-CPT1BH3BT56 UBE2E3-209ENST00000602710 1556 ntAPPRIS P1 TSL 1 (best) BASIC9.13□□□□□ -0.95
CHKB-CPT1BH3BT56 CES4A-206ENST00000540579 1825 ntTSL 1 (best) BASIC9.13□□□□□ -0.95
CHKB-CPT1BH3BT56 THBS1-201ENST00000260356 7775 ntAPPRIS P1 TSL 1 (best) BASIC9.13□□□□□ -0.95
CHKB-CPT1BH3BT56 GRIN1-207ENST00000371560 3640 ntAPPRIS ALT1 TSL 1 (best) BASIC9.13□□□□□ -0.95
CHKB-CPT1BH3BT56 FXYD7-201ENST00000270310 712 ntAPPRIS P2 TSL 1 (best) BASIC9.13□□□□□ -0.95
CHKB-CPT1BH3BT56 CTAG2-202ENST00000369585 748 ntAPPRIS P1 TSL 1 (best) BASIC9.13□□□□□ -0.95
CHKB-CPT1BH3BT56 C1orf50-201ENST00000372525 996 ntAPPRIS P1 TSL 1 (best) BASIC9.13□□□□□ -0.95
CHKB-CPT1BH3BT56 ICAM4-202ENST00000380770 1211 ntAPPRIS P3 TSL 1 (best) BASIC9.13□□□□□ -0.95
CHKB-CPT1BH3BT56 ATPIF1-204ENST00000497986 599 ntTSL 2 BASIC9.13□□□□□ -0.95
CHKB-CPT1BH3BT56 AC106820.5-201ENST00000566085 789 ntTSL 3 BASIC9.13□□□□□ -0.95
CHKB-CPT1BH3BT56 C19orf84-201ENST00000570516 788 ntAPPRIS ALT2 TSL 1 (best) BASIC9.13□□□□□ -0.95
CHKB-CPT1BH3BT56 AC145207.2-202ENST00000576554 565 ntTSL 5 BASIC9.13□□□□□ -0.95
CHKB-CPT1BH3BT56 RPRD1A-207ENST00000588737 1264 ntTSL 2 BASIC9.13□□□□□ -0.95
CHKB-CPT1BH3BT56 VIM-AS1-202ENST00000605833 918 ntTSL 3 BASIC9.13□□□□□ -0.95
CHKB-CPT1BH3BT56 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC9.13□□□□□ -0.95
CHKB-CPT1BH3BT56 RNF114-202ENST00000622920 1284 ntTSL 5 BASIC9.13□□□□□ -0.95
CHKB-CPT1BH3BT56 GIPC3-201ENST00000322315 4335 ntAPPRIS P1 TSL 1 (best) BASIC9.13□□□□□ -0.95
CHKB-CPT1BH3BT56 CDCA4-202ENST00000392590 1536 ntAPPRIS P1 TSL 1 (best) BASIC9.13□□□□□ -0.95
CHKB-CPT1BH3BT56 PRPF31-202ENST00000391755 1767 ntTSL 5 BASIC9.13□□□□□ -0.95
CHKB-CPT1BH3BT56 ANHX-201ENST00000419717 1765 ntAPPRIS P1 TSL 2 BASIC9.13□□□□□ -0.95
CHKB-CPT1BH3BT56 ZNF557-201ENST00000252840 2268 ntAPPRIS P3 TSL 1 (best) BASIC9.13□□□□□ -0.95
CHKB-CPT1BH3BT56 MAN1B1-202ENST00000371589 2769 ntAPPRIS P1 TSL 1 (best) BASIC9.13□□□□□ -0.95
CHKB-CPT1BH3BT56 TRIM10-204ENST00000449742 3546 ntAPPRIS P1 TSL 1 (best) BASIC9.13□□□□□ -0.95
CHKB-CPT1BH3BT56 KIAA0895L-202ENST00000561621 3500 ntTSL 1 (best) BASIC9.13□□□□□ -0.95
CHKB-CPT1BH3BT56 PEG3-202ENST00000593695 4741 ntTSL 1 (best) BASIC9.13□□□□□ -0.95
CHKB-CPT1BH3BT56 SH2D5-201ENST00000375031 3705 ntTSL 2 BASIC9.13□□□□□ -0.95
CHKB-CPT1BH3BT56 XKRX-202ENST00000468904 2249 ntTSL 2 BASIC9.13□□□□□ -0.95
CHKB-CPT1BH3BT56 ADAMTS4-201ENST00000367995 1961 ntTSL 1 (best) BASIC9.13□□□□□ -0.95
CHKB-CPT1BH3BT56 TMEM189-203ENST00000371656 1973 ntTSL 2 BASIC9.13□□□□□ -0.95
CHKB-CPT1BH3BT56 TMEM216-203ENST00000515837 1958 ntAPPRIS P2 TSL 2 BASIC9.13□□□□□ -0.95
CHKB-CPT1BH3BT56 SCOC-211ENST00000614192 1959 ntAPPRIS P2 TSL 1 (best) BASIC9.13□□□□□ -0.95
CHKB-CPT1BH3BT56 SCAF8-203ENST00000417268 4944 ntTSL 2 BASIC9.13□□□□□ -0.95
CHKB-CPT1BH3BT56 YTHDF2-201ENST00000373812 2925 ntAPPRIS P1 TSL 1 (best) BASIC9.13□□□□□ -0.95
CHKB-CPT1BH3BT56 SERPINA3-203ENST00000467132 2660 ntAPPRIS P1 TSL 2 BASIC9.13□□□□□ -0.95
CHKB-CPT1BH3BT56 MIER1-204ENST00000371012 2420 ntTSL 2 BASIC9.13□□□□□ -0.95
CHKB-CPT1BH3BT56 ARHGEF4-206ENST00000428230 2172 ntTSL 5 BASIC9.13□□□□□ -0.95
CHKB-CPT1BH3BT56 TCP10-210ENST00000617120 2182 ntAPPRIS ALT2 TSL 5 BASIC9.13□□□□□ -0.95
CHKB-CPT1BH3BT56 RRN3P3-202ENST00000551766 3366 ntTSL 2 BASIC9.13□□□□□ -0.95
CHKB-CPT1BH3BT56 OS9-207ENST00000439210 1946 ntTSL 2 BASIC9.13□□□□□ -0.95
CHKB-CPT1BH3BT56 TRIP10-208ENST00000596758 1920 ntTSL 1 (best) BASIC9.13□□□□□ -0.95
CHKB-CPT1BH3BT56 FAM72C-201ENST00000369175 1658 ntTSL 1 (best) BASIC9.13□□□□□ -0.95
CHKB-CPT1BH3BT56 DCLK3-203ENST00000636136 5446 ntTSL 5 BASIC9.13□□□□□ -0.95
CHKB-CPT1BH3BT56 STK3-201ENST00000419617 2826 ntAPPRIS P1 TSL 1 (best) BASIC9.13□□□□□ -0.95
CHKB-CPT1BH3BT56 ARHGAP10-201ENST00000336498 3299 ntAPPRIS P1 TSL 1 (best) BASIC9.13□□□□□ -0.95
CHKB-CPT1BH3BT56 FOSL2-202ENST00000379619 5829 ntTSL 1 (best) BASIC9.13□□□□□ -0.95
CHKB-CPT1BH3BT56 HGSNAT-207ENST00000521576 2332 ntTSL 2 BASIC9.13□□□□□ -0.95
CHKB-CPT1BH3BT56 ARHGEF2-204ENST00000368315 1645 ntTSL 5 BASIC9.13□□□□□ -0.95
CHKB-CPT1BH3BT56 AC004805.1-201ENST00000577662 1616 ntAPPRIS P1 TSL 2 BASIC9.13□□□□□ -0.95
CHKB-CPT1BH3BT56 PARP10-201ENST00000313028 3497 ntAPPRIS P3 TSL 1 (best) BASIC9.12□□□□□ -0.95
CHKB-CPT1BH3BT56 LIMCH1-208ENST00000508501 5054 ntAPPRIS ALT2 TSL 1 (best) BASIC9.12□□□□□ -0.95
CHKB-CPT1BH3BT56 LIMCH1-217ENST00000512946 5057 ntAPPRIS ALT2 TSL 1 (best) BASIC9.12□□□□□ -0.95
CHKB-CPT1BH3BT56 PHGDH-208ENST00000641023 2096 ntAPPRIS P1 BASIC9.12□□□□□ -0.95
CHKB-CPT1BH3BT56 TRIB2-201ENST00000155926 4391 ntAPPRIS P1 TSL 1 (best) BASIC9.12□□□□□ -0.95
CHKB-CPT1BH3BT56 CD34-203ENST00000367036 2538 ntAPPRIS ALT2 TSL 1 (best) BASIC9.12□□□□□ -0.95
CHKB-CPT1BH3BT56 CXorf36-201ENST00000377934 2513 ntTSL 1 (best) BASIC9.12□□□□□ -0.95
CHKB-CPT1BH3BT56 TMBIM4-202ENST00000358230 2952 ntAPPRIS P1 TSL 1 (best) BASIC9.12□□□□□ -0.95
CHKB-CPT1BH3BT56 SLC23A1-201ENST00000348729 2299 ntTSL 1 (best) BASIC9.12□□□□□ -0.95
CHKB-CPT1BH3BT56 NF1-211ENST00000487476 2265 ntTSL 1 (best) BASIC9.12□□□□□ -0.95
CHKB-CPT1BH3BT56 PLA2G4B-202ENST00000458483 2734 ntAPPRIS P1 TSL 2 BASIC9.12□□□□□ -0.95
CHKB-CPT1BH3BT56 FAM151A-201ENST00000302250 2005 ntAPPRIS P2 TSL 1 (best) BASIC9.12□□□□□ -0.95
CHKB-CPT1BH3BT56 CABIN1-204ENST00000405822 6952 ntAPPRIS ALT2 TSL 1 (best) BASIC9.12□□□□□ -0.95
CHKB-CPT1BH3BT56 AC027601.5-201ENST00000624065 2482 ntBASIC9.12□□□□□ -0.95
CHKB-CPT1BH3BT56 CLN3-240ENST00000631023 1586 ntTSL 5 BASIC9.12□□□□□ -0.95
CHKB-CPT1BH3BT56 ACAD8-201ENST00000281182 2249 ntAPPRIS P1 TSL 1 (best) BASIC9.12□□□□□ -0.95
CHKB-CPT1BH3BT56 TUBB3-201ENST00000315491 1769 ntAPPRIS P1 TSL 1 (best) BASIC9.12□□□□□ -0.95
CHKB-CPT1BH3BT56 FAM160B1-203ENST00000369250 2870 ntTSL 1 (best) BASIC9.12□□□□□ -0.95
CHKB-CPT1BH3BT56 NXN-202ENST00000537628 1340 ntTSL 3 BASIC9.12□□□□□ -0.95
CHKB-CPT1BH3BT56 AC022898.2-201ENST00000616822 1312 ntBASIC9.12□□□□□ -0.95
CHKB-CPT1BH3BT56 MIS18BP1-212ENST00000627697 1950 ntTSL 5 BASIC9.12□□□□□ -0.95
CHKB-CPT1BH3BT56 AP001062.1-201ENST00000448927 4354 ntTSL 2 BASIC9.12□□□□□ -0.95
CHKB-CPT1BH3BT56 CYFIP1-207ENST00000617556 5674 ntTSL 1 (best) BASIC9.12□□□□□ -0.95
CHKB-CPT1BH3BT56 PNCK-201ENST00000340888 1508 ntAPPRIS P1 TSL 5 BASIC9.12□□□□□ -0.95
CHKB-CPT1BH3BT56 ZMYM3-202ENST00000373978 1511 ntTSL 5 BASIC9.12□□□□□ -0.95
CHKB-CPT1BH3BT56 MOK-233ENST00000524214 1539 ntTSL 2 BASIC9.12□□□□□ -0.95
CHKB-CPT1BH3BT56 LUC7L-221ENST00000629543 1520 ntTSL 5 BASIC9.12□□□□□ -0.95
CHKB-CPT1BH3BT56 DAPK2-202ENST00000457488 1741 ntAPPRIS P1 TSL 1 (best) BASIC9.12□□□□□ -0.95
CHKB-CPT1BH3BT56 PACSIN2-201ENST00000263246 3249 ntAPPRIS P1 TSL 1 (best) BASIC9.12□□□□□ -0.95
CHKB-CPT1BH3BT56 WSCD2-201ENST00000332082 4710 ntAPPRIS P1 TSL 1 (best) BASIC9.12□□□□□ -0.95
Retrieved 100 of 98,524 protein–RNA pairs in 44.9 ms