Protein–RNA interactions for Protein: A0A539

TCRBV7S3A2, T-cell receptor beta variable 4-2 (Fragment), humanhuman

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TCRBV7S3A2A0A539 AC069224.1-201ENST00000566372 1715 ntBASIC16.78■□□□□ 0.28
TCRBV7S3A2A0A539 CACNA2D3-201ENST00000288197 3671 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
TCRBV7S3A2A0A539 CACNA2D3-206ENST00000474759 3675 ntAPPRIS P2 TSL 1 (best) BASIC16.78■□□□□ 0.28
TCRBV7S3A2A0A539 GABRA5-202ENST00000355395 2183 ntAPPRIS P1 TSL 5 BASIC16.78■□□□□ 0.28
TCRBV7S3A2A0A539 MASTL-203ENST00000375946 3623 ntAPPRIS P3 TSL 1 (best) BASIC16.78■□□□□ 0.28
TCRBV7S3A2A0A539 ZMIZ1-205ENST00000611351 2196 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
TCRBV7S3A2A0A539 IRF5-215ENST00000619830 1652 ntTSL 2 BASIC16.78■□□□□ 0.28
TCRBV7S3A2A0A539 MPPE1-211ENST00000588072 4236 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
TCRBV7S3A2A0A539 CMKLR1-206ENST00000552995 1890 ntAPPRIS P3 TSL 1 (best) BASIC16.78■□□□□ 0.28
TCRBV7S3A2A0A539 ALPL-204ENST00000374840 2589 ntAPPRIS P3 TSL 1 (best) BASIC16.78■□□□□ 0.28
TCRBV7S3A2A0A539 GDF6-201ENST00000287020 3701 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
TCRBV7S3A2A0A539 RASGRP2-201ENST00000354024 2310 ntAPPRIS P2 TSL 1 (best) BASIC16.78■□□□□ 0.28
TCRBV7S3A2A0A539 WWTR1-204ENST00000467467 1603 ntAPPRIS P1 TSL 5 BASIC16.78■□□□□ 0.28
TCRBV7S3A2A0A539 NLGN2-201ENST00000302926 4642 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
TCRBV7S3A2A0A539 NFATC4-211ENST00000554344 2955 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
TCRBV7S3A2A0A539 CDK11B-209ENST00000629312 2496 ntTSL 5 BASIC16.77■□□□□ 0.28
TCRBV7S3A2A0A539 ZSCAN18-208ENST00000595944 1768 ntTSL 2 BASIC16.77■□□□□ 0.28
TCRBV7S3A2A0A539 CACFD1-206ENST00000540581 2880 ntAPPRIS ALT2 TSL 2 BASIC16.77■□□□□ 0.28
TCRBV7S3A2A0A539 AMN1-201ENST00000281471 2110 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
TCRBV7S3A2A0A539 GBGT1-201ENST00000372036 871 ntTSL 3 BASIC16.77■□□□□ 0.28
TCRBV7S3A2A0A539 CBX7-202ENST00000401405 784 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
TCRBV7S3A2A0A539 ELOB-202ENST00000409477 997 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
TCRBV7S3A2A0A539 AC091180.3-201ENST00000506504 963 ntTSL 3 BASIC16.77■□□□□ 0.28
TCRBV7S3A2A0A539 BAX-213ENST00000539787 458 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
TCRBV7S3A2A0A539 MAP1LC3B-207ENST00000565788 625 ntTSL 2 BASIC16.77■□□□□ 0.28
TCRBV7S3A2A0A539 OVCA2-201ENST00000572195 1122 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
TCRBV7S3A2A0A539 LINC01128-210ENST00000609139 455 ntTSL 3 BASIC16.77■□□□□ 0.28
TCRBV7S3A2A0A539 IRF5-214ENST00000613821 595 ntTSL 5 BASIC16.77■□□□□ 0.28
TCRBV7S3A2A0A539 TSPY4-205ENST00000640033 663 ntAPPRIS ALT2 TSL 5 BASIC16.77■□□□□ 0.28
TCRBV7S3A2A0A539 PKD1L2-209ENST00000531391 1488 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
TCRBV7S3A2A0A539 KLHDC8A-201ENST00000367155 2928 ntAPPRIS P1 TSL 2 BASIC16.77■□□□□ 0.27
TCRBV7S3A2A0A539 MIEF1-202ENST00000402881 2269 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
TCRBV7S3A2A0A539 CHMP1A-202ENST00000535997 2295 ntTSL 2 BASIC16.77■□□□□ 0.27
TCRBV7S3A2A0A539 PTPRN2-205ENST00000409483 4711 ntAPPRIS ALT2 TSL 2 BASIC16.77■□□□□ 0.27
TCRBV7S3A2A0A539 PRR30-202ENST00000432962 1440 ntAPPRIS ALT2 TSL 3 BASIC16.77■□□□□ 0.27
TCRBV7S3A2A0A539 COL4A2-201ENST00000360467 6281 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.27
TCRBV7S3A2A0A539 PCDH1-203ENST00000394536 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.27
TCRBV7S3A2A0A539 PPP1CB-202ENST00000358506 4771 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.27
TCRBV7S3A2A0A539 CCDC90B-202ENST00000455220 1550 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
TCRBV7S3A2A0A539 LINC01118-203ENST00000479311 1588 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
TCRBV7S3A2A0A539 AC005064.1-201ENST00000422488 2725 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
TCRBV7S3A2A0A539 RAP2C-201ENST00000342983 3896 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
TCRBV7S3A2A0A539 GK2-201ENST00000358842 1942 ntAPPRIS P1 BASIC16.76■□□□□ 0.27
TCRBV7S3A2A0A539 HS6ST2-201ENST00000370833 1938 ntTSL 5 BASIC16.76■□□□□ 0.27
TCRBV7S3A2A0A539 OTX1-201ENST00000282549 2861 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
TCRBV7S3A2A0A539 OTX1-202ENST00000366671 2861 ntAPPRIS P1 TSL 3 BASIC16.76■□□□□ 0.27
TCRBV7S3A2A0A539 AC092384.3-202ENST00000564646 2873 ntBASIC16.76■□□□□ 0.27
TCRBV7S3A2A0A539 KDM6A-213ENST00000611820 5924 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
TCRBV7S3A2A0A539 HLA-B-249ENST00000412585 1547 ntAPPRIS P1 BASIC16.76■□□□□ 0.27
TCRBV7S3A2A0A539 CD83-201ENST00000379153 2471 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
TCRBV7S3A2A0A539 COL4A3BP-203ENST00000380494 5651 ntTSL 2 BASIC16.76■□□□□ 0.27
TCRBV7S3A2A0A539 SH3YL1-206ENST00000405430 2064 ntAPPRIS P1 TSL 5 BASIC16.76■□□□□ 0.27
TCRBV7S3A2A0A539 KCNQ2-213ENST00000626839 9213 ntAPPRIS ALT1 TSL 1 (best) BASIC16.76■□□□□ 0.27
TCRBV7S3A2A0A539 ASAH1-201ENST00000262097 2618 ntAPPRIS P2 TSL 1 (best) BASIC16.76■□□□□ 0.27
TCRBV7S3A2A0A539 ACE-203ENST00000413513 2237 ntTSL 2 BASIC16.76■□□□□ 0.27
TCRBV7S3A2A0A539 SPIN3-224ENST00000639583 2245 ntTSL 5 BASIC16.76■□□□□ 0.27
TCRBV7S3A2A0A539 ZFAND5-205ENST00000376962 2785 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
TCRBV7S3A2A0A539 IL3RA-202ENST00000381469 1476 ntTSL 5 BASIC16.76■□□□□ 0.27
TCRBV7S3A2A0A539 HTR1B-201ENST00000369947 2021 ntAPPRIS P1 BASIC16.76■□□□□ 0.27
TCRBV7S3A2A0A539 PLAA-205ENST00000520884 2041 ntTSL 2 BASIC16.76■□□□□ 0.27
TCRBV7S3A2A0A539 DYNC1LI1-204ENST00000432458 1827 ntTSL 2 BASIC16.76■□□□□ 0.27
TCRBV7S3A2A0A539 PTH2-201ENST00000270631 459 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
TCRBV7S3A2A0A539 SLX1A-202ENST00000345535 762 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
TCRBV7S3A2A0A539 SLX1B-202ENST00000351581 762 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
TCRBV7S3A2A0A539 HIST1H3D-201ENST00000356476 411 ntAPPRIS P1 BASIC16.76■□□□□ 0.27
TCRBV7S3A2A0A539 HUS1B-201ENST00000380907 1025 ntAPPRIS P1 BASIC16.76■□□□□ 0.27
TCRBV7S3A2A0A539 UBE2C-206ENST00000405520 641 ntTSL 2 BASIC16.76■□□□□ 0.27
TCRBV7S3A2A0A539 IGLL3P-201ENST00000412472 434 ntBASIC16.76■□□□□ 0.27
TCRBV7S3A2A0A539 TSPAN32-207ENST00000451520 1236 ntAPPRIS ALT2 TSL 2 BASIC16.76■□□□□ 0.27
TCRBV7S3A2A0A539 PMF1-BGLAP-203ENST00000490491 1007 ntAPPRIS P1 TSL 2 BASIC16.76■□□□□ 0.27
TCRBV7S3A2A0A539 CXCL1P1-201ENST00000502804 216 ntBASIC16.76■□□□□ 0.27
TCRBV7S3A2A0A539 BRICD5-202ENST00000562360 783 ntTSL 2 BASIC16.76■□□□□ 0.27
TCRBV7S3A2A0A539 SPINT1-AS1-203ENST00000565315 629 ntTSL 2 BASIC16.76■□□□□ 0.27
TCRBV7S3A2A0A539 RN7SL510P-201ENST00000581311 263 ntBASIC16.76■□□□□ 0.27
TCRBV7S3A2A0A539 AC104692.2-201ENST00000603054 253 ntBASIC16.76■□□□□ 0.27
TCRBV7S3A2A0A539 UBE2C-208ENST00000617055 705 ntTSL 3 BASIC16.76■□□□□ 0.27
TCRBV7S3A2A0A539 AKR1B15-202ENST00000457545 1621 ntAPPRIS P1 TSL 5 BASIC16.76■□□□□ 0.27
TCRBV7S3A2A0A539 HYAL1-201ENST00000266031 2517 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
TCRBV7S3A2A0A539 CNKSR1-202ENST00000374253 2538 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
TCRBV7S3A2A0A539 DOK5-201ENST00000262593 1963 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
TCRBV7S3A2A0A539 CTCF-201ENST00000264010 3939 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
TCRBV7S3A2A0A539 ZNF561-AS1-204ENST00000587536 1799 ntTSL 2 BASIC16.76■□□□□ 0.27
TCRBV7S3A2A0A539 ZNF398-203ENST00000483892 2121 ntTSL 5 BASIC16.76■□□□□ 0.27
TCRBV7S3A2A0A539 GLS2-201ENST00000311966 2623 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
TCRBV7S3A2A0A539 BRD2-201ENST00000374825 4894 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
TCRBV7S3A2A0A539 RUSC1-205ENST00000368354 3114 ntTSL 2 BASIC16.76■□□□□ 0.27
TCRBV7S3A2A0A539 ZNF517-202ENST00000525105 1383 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
TCRBV7S3A2A0A539 OSBPL6-203ENST00000357080 2217 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
TCRBV7S3A2A0A539 H2BFM-201ENST00000355016 1882 ntAPPRIS P1 TSL 2 BASIC16.76■□□□□ 0.27
TCRBV7S3A2A0A539 SLC25A35-205ENST00000580340 1541 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
TCRBV7S3A2A0A539 HSPA12B-201ENST00000254963 3151 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
TCRBV7S3A2A0A539 PICALM-204ENST00000526033 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC16.75■□□□□ 0.27
TCRBV7S3A2A0A539 KCNT1-206ENST00000486577 3760 ntAPPRIS ALT2 TSL 5 BASIC16.75■□□□□ 0.27
TCRBV7S3A2A0A539 CHMP5-201ENST00000223500 1477 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
TCRBV7S3A2A0A539 EML3-202ENST00000394773 3256 ntAPPRIS P2 TSL 1 (best) BASIC16.75■□□□□ 0.27
TCRBV7S3A2A0A539 CLCNKB-201ENST00000375667 2129 ntTSL 2 BASIC16.75■□□□□ 0.27
TCRBV7S3A2A0A539 STT3B-201ENST00000295770 4248 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
TCRBV7S3A2A0A539 SNAPC3-202ENST00000380821 5680 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
TCRBV7S3A2A0A539 ADRA1A-202ENST00000354550 1765 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
TCRBV7S3A2A0A539 MPL-201ENST00000372470 1908 ntAPPRIS P2 TSL 1 (best) BASIC16.75■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 25.9 ms