Protein–RNA interactions for Protein: Q9Y5H0

PCDHGA3, Protocadherin gamma-A3, humanhuman

Predictions only

Length 932 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA3Q9Y5H0 SGCB-201ENST00000381431 4431 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
PCDHGA3Q9Y5H0 LSP1-204ENST00000406638 2640 ntAPPRIS ALT2 TSL 2 BASIC16.12■□□□□ 0.17
PCDHGA3Q9Y5H0 SLC4A5-203ENST00000377632 3123 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
PCDHGA3Q9Y5H0 LINC00313-201ENST00000332440 579 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
PCDHGA3Q9Y5H0 STOML1-203ENST00000359750 984 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
PCDHGA3Q9Y5H0 SFT2D1-201ENST00000361731 1079 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
PCDHGA3Q9Y5H0 HNRNPFP1-201ENST00000391730 1133 ntBASIC16.12■□□□□ 0.17
PCDHGA3Q9Y5H0 AL035633.1-201ENST00000406139 838 ntBASIC16.12■□□□□ 0.17
PCDHGA3Q9Y5H0 RNA5SP421-201ENST00000516864 134 ntBASIC16.12■□□□□ 0.17
PCDHGA3Q9Y5H0 SFTPC-204ENST00000520605 519 ntTSL 3 BASIC16.12■□□□□ 0.17
PCDHGA3Q9Y5H0 SFTPC-210ENST00000524255 681 ntTSL 2 BASIC16.12■□□□□ 0.17
PCDHGA3Q9Y5H0 AC005498.2-205ENST00000593218 784 ntBASIC16.12■□□□□ 0.17
PCDHGA3Q9Y5H0 COQ6-220ENST00000629426 1538 ntTSL 5 BASIC16.12■□□□□ 0.17
PCDHGA3Q9Y5H0 CYP4F11-203ENST00000402119 3161 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
PCDHGA3Q9Y5H0 PCDHA1-201ENST00000378133 2726 ntBASIC16.12■□□□□ 0.17
PCDHGA3Q9Y5H0 KCNQ2-236ENST00000637193 2983 ntTSL 5 BASIC16.12■□□□□ 0.17
PCDHGA3Q9Y5H0 RTL8B-201ENST00000391440 2026 ntAPPRIS P1 BASIC16.12■□□□□ 0.17
PCDHGA3Q9Y5H0 CACNB3-203ENST00000540990 1814 ntTSL 2 BASIC16.12■□□□□ 0.17
PCDHGA3Q9Y5H0 TBC1D30-203ENST00000539867 2594 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
PCDHGA3Q9Y5H0 PNMA6E-202ENST00000633844 2596 ntTSL 3 BASIC16.12■□□□□ 0.17
PCDHGA3Q9Y5H0 ZFPL1-201ENST00000294258 1371 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
PCDHGA3Q9Y5H0 CD300A-202ENST00000360141 1858 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
PCDHGA3Q9Y5H0 FANCA-203ENST00000389302 1641 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
PCDHGA3Q9Y5H0 RPAP3-203ENST00000432584 2133 ntTSL 2 BASIC16.12■□□□□ 0.17
PCDHGA3Q9Y5H0 TOM1-210ENST00000449058 2389 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
PCDHGA3Q9Y5H0 SLC25A45-208ENST00000527174 2138 ntAPPRIS P1 TSL 3 BASIC16.12■□□□□ 0.17
PCDHGA3Q9Y5H0 AC008969.1-201ENST00000550135 6438 ntTSL 2 BASIC16.12■□□□□ 0.17
PCDHGA3Q9Y5H0 LCK-201ENST00000333070 2166 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
PCDHGA3Q9Y5H0 BEST2-202ENST00000549706 2183 ntAPPRIS P1 TSL 5 BASIC16.11■□□□□ 0.17
PCDHGA3Q9Y5H0 SEPT9-237ENST00000591198 2160 ntTSL 2 BASIC16.11■□□□□ 0.17
PCDHGA3Q9Y5H0 HNRNPRP1-201ENST00000453465 1695 ntBASIC16.11■□□□□ 0.17
PCDHGA3Q9Y5H0 SPINT1-202ENST00000562057 2456 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
PCDHGA3Q9Y5H0 ZNF423-206ENST00000563137 4911 ntAPPRIS ALT2 TSL 5 BASIC16.11■□□□□ 0.17
PCDHGA3Q9Y5H0 TUBB2B-201ENST00000259818 2020 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
PCDHGA3Q9Y5H0 TBXAS1-202ENST00000411653 1792 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
PCDHGA3Q9Y5H0 USP3-AS1-201ENST00000558831 1784 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
PCDHGA3Q9Y5H0 COPS7B-206ENST00000410017 2051 ntTSL 3 BASIC16.11■□□□□ 0.17
PCDHGA3Q9Y5H0 RSRP1-201ENST00000243189 1502 ntAPPRIS P2 TSL 1 (best) BASIC16.11■□□□□ 0.17
PCDHGA3Q9Y5H0 CIB3-201ENST00000269878 711 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
PCDHGA3Q9Y5H0 CGB3-201ENST00000357383 877 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
PCDHGA3Q9Y5H0 CGB2-201ENST00000359342 627 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
PCDHGA3Q9Y5H0 GRTP1-AS1-201ENST00000419199 867 ntTSL 5 BASIC16.11■□□□□ 0.17
PCDHGA3Q9Y5H0 CNN2P2-201ENST00000443536 909 ntBASIC16.11■□□□□ 0.17
PCDHGA3Q9Y5H0 CNN2P3-201ENST00000450201 906 ntBASIC16.11■□□□□ 0.17
PCDHGA3Q9Y5H0 LINC01336-202ENST00000506086 479 ntTSL 5 BASIC16.11■□□□□ 0.17
PCDHGA3Q9Y5H0 AC064807.1-203ENST00000520357 575 ntTSL 5 BASIC16.11■□□□□ 0.17
PCDHGA3Q9Y5H0 BATF2-204ENST00000527716 1230 ntTSL 2 BASIC16.11■□□□□ 0.17
PCDHGA3Q9Y5H0 AC243562.1-201ENST00000560672 389 ntBASIC16.11■□□□□ 0.17
PCDHGA3Q9Y5H0 INO80E-210ENST00000567705 880 ntTSL 3 BASIC16.11■□□□□ 0.17
PCDHGA3Q9Y5H0 PGPEP1-209ENST00000604499 769 ntTSL 5 BASIC16.11■□□□□ 0.17
PCDHGA3Q9Y5H0 AL136317.3-201ENST00000618497 906 ntBASIC16.11■□□□□ 0.17
PCDHGA3Q9Y5H0 C9orf64-203ENST00000376344 2443 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
PCDHGA3Q9Y5H0 CERCAM-213ENST00000612334 1554 ntAPPRIS ALT2 TSL 5 BASIC16.11■□□□□ 0.17
PCDHGA3Q9Y5H0 ELOA3-201ENST00000330682 1877 ntAPPRIS P1 BASIC16.11■□□□□ 0.17
PCDHGA3Q9Y5H0 LETM2-202ENST00000379957 1873 ntAPPRIS ALT2 TSL 5 BASIC16.11■□□□□ 0.17
PCDHGA3Q9Y5H0 CXXC1P1-201ENST00000483225 1897 ntTSL 2 BASIC16.11■□□□□ 0.17
PCDHGA3Q9Y5H0 FAM86DP-207ENST00000497543 2152 ntTSL 2 BASIC16.11■□□□□ 0.17
PCDHGA3Q9Y5H0 HNRNPU-205ENST00000444376 6827 ntAPPRIS P3 TSL 1 (best) BASIC16.11■□□□□ 0.17
PCDHGA3Q9Y5H0 TBC1D10B-201ENST00000409939 3350 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
PCDHGA3Q9Y5H0 ELP5-201ENST00000354429 1304 ntAPPRIS P2 TSL 5 BASIC16.11■□□□□ 0.17
PCDHGA3Q9Y5H0 MAGI1-201ENST00000330909 7415 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
PCDHGA3Q9Y5H0 GLS2-216ENST00000610413 2296 ntTSL 5 BASIC16.11■□□□□ 0.17
PCDHGA3Q9Y5H0 C6orf106-202ENST00000374023 4418 ntAPPRIS P4 TSL 1 (best) BASIC16.11■□□□□ 0.17
PCDHGA3Q9Y5H0 UBAC2-203ENST00000403766 1375 ntAPPRIS P1 TSL 2 BASIC16.11■□□□□ 0.17
PCDHGA3Q9Y5H0 SEMA4B-202ENST00000411539 3807 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
PCDHGA3Q9Y5H0 PLCB3-204ENST00000540288 4469 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
PCDHGA3Q9Y5H0 NFS1-202ENST00000374085 2645 ntTSL 2 BASIC16.11■□□□□ 0.17
PCDHGA3Q9Y5H0 MAPRE1-201ENST00000375571 2623 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
PCDHGA3Q9Y5H0 ZNF764-202ENST00000395091 2970 ntAPPRIS ALT1 TSL 2 BASIC16.11■□□□□ 0.17
PCDHGA3Q9Y5H0 LINC00887-203ENST00000429578 1717 ntTSL 2 BASIC16.11■□□□□ 0.17
PCDHGA3Q9Y5H0 DNAAF1-201ENST00000378553 2379 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
PCDHGA3Q9Y5H0 ZC3H7B-201ENST00000352645 5909 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
PCDHGA3Q9Y5H0 DNAJA3-201ENST00000262375 2763 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
PCDHGA3Q9Y5H0 PSMD6-210ENST00000492933 1495 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
PCDHGA3Q9Y5H0 MCMBP-201ENST00000360003 4169 ntAPPRIS P3 TSL 2 BASIC16.1■□□□□ 0.17
PCDHGA3Q9Y5H0 TMEM175-201ENST00000264771 1860 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
PCDHGA3Q9Y5H0 MSI2-201ENST00000284073 6364 ntAPPRIS P4 TSL 1 (best) BASIC16.1■□□□□ 0.17
PCDHGA3Q9Y5H0 MAT2A-202ENST00000409017 1927 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
PCDHGA3Q9Y5H0 MREG-205ENST00000620139 2618 ntAPPRIS P1 TSL 2 BASIC16.1■□□□□ 0.17
PCDHGA3Q9Y5H0 DHX30-205ENST00000445061 4065 ntAPPRIS P2 TSL 1 (best) BASIC16.1■□□□□ 0.17
PCDHGA3Q9Y5H0 SYNC-202ENST00000409190 3398 ntAPPRIS P3 TSL 2 BASIC16.1■□□□□ 0.17
PCDHGA3Q9Y5H0 PDHX-203ENST00000448838 2653 ntTSL 5 BASIC16.1■□□□□ 0.17
PCDHGA3Q9Y5H0 VAV2-201ENST00000371850 4837 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
PCDHGA3Q9Y5H0 PRRT4-205ENST00000489835 2313 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
PCDHGA3Q9Y5H0 TK2-207ENST00000544898 3441 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
PCDHGA3Q9Y5H0 SYNRG-222ENST00000614941 3406 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
PCDHGA3Q9Y5H0 SPERT-201ENST00000310521 1613 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
PCDHGA3Q9Y5H0 EZR-202ENST00000367075 3096 ntAPPRIS P2 TSL 1 (best) BASIC16.1■□□□□ 0.17
PCDHGA3Q9Y5H0 PPP1R9B-202ENST00000612501 4167 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
PCDHGA3Q9Y5H0 RESP18-201ENST00000333527 795 ntAPPRIS P2 TSL 1 (best) BASIC16.1■□□□□ 0.17
PCDHGA3Q9Y5H0 HMGA1P7-201ENST00000406908 502 ntBASIC16.1■□□□□ 0.17
PCDHGA3Q9Y5H0 FOLR3-201ENST00000442948 805 ntTSL 5 BASIC16.1■□□□□ 0.17
PCDHGA3Q9Y5H0 OST4-203ENST00000456793 561 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
PCDHGA3Q9Y5H0 AL355140.1-201ENST00000457328 398 ntTSL 5 BASIC16.1■□□□□ 0.17
PCDHGA3Q9Y5H0 TMEM161B-AS1-202ENST00000501715 1101 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
PCDHGA3Q9Y5H0 AC021744.1-201ENST00000518354 453 ntTSL 3 BASIC16.1■□□□□ 0.17
PCDHGA3Q9Y5H0 C8orf46-213ENST00000521495 557 ntTSL 4 BASIC16.1■□□□□ 0.17
PCDHGA3Q9Y5H0 AP000275.2-202ENST00000553001 929 ntTSL 5 BASIC16.1■□□□□ 0.17
PCDHGA3Q9Y5H0 GREM1-201ENST00000560677 623 ntTSL 4 BASIC16.1■□□□□ 0.17
PCDHGA3Q9Y5H0 AL135744.1-201ENST00000565098 629 ntBASIC16.1■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 36.2 ms