Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 AP001094.4-201ENST00000579008 2176 ntBASIC31.04■■■□□ 2.56
SHROOM4Q9ULL8 AC004890.2-201ENST00000426347 2419 ntTSL 5 BASIC31.04■■■□□ 2.56
SHROOM4Q9ULL8 ZNRF3-201ENST00000402174 2667 ntAPPRIS P3 TSL 2 BASIC31.04■■■□□ 2.56
SHROOM4Q9ULL8 SPDEF-201ENST00000374037 1895 ntAPPRIS P3 TSL 1 (best) BASIC31.04■■■□□ 2.56
SHROOM4Q9ULL8 ARL6IP6-201ENST00000326446 2805 ntAPPRIS P1 TSL 1 (best) BASIC31.03■■■□□ 2.56
SHROOM4Q9ULL8 PHF20L1-203ENST00000337920 2311 ntTSL 1 (best) BASIC31.03■■■□□ 2.56
SHROOM4Q9ULL8 INPP5J-213ENST00000620191 2306 ntTSL 1 (best) BASIC31.03■■■□□ 2.56
SHROOM4Q9ULL8 STAC3-206ENST00000554578 1580 ntTSL 1 (best) BASIC31.03■■■□□ 2.56
SHROOM4Q9ULL8 SFRP2-201ENST00000274063 2032 ntAPPRIS P1 TSL 1 (best) BASIC31.03■■■□□ 2.56
SHROOM4Q9ULL8 NARFL-218ENST00000568545 2486 ntTSL 2 BASIC31.03■■■□□ 2.56
SHROOM4Q9ULL8 POLR2I-201ENST00000221859 913 ntAPPRIS P1 TSL 1 (best) BASIC31.03■■■□□ 2.56
SHROOM4Q9ULL8 HAUS4P1-201ENST00000406739 1145 ntBASIC31.03■■■□□ 2.56
SHROOM4Q9ULL8 MEP1AP4-201ENST00000423244 1087 ntBASIC31.03■■■□□ 2.56
SHROOM4Q9ULL8 SVIL-AS1-208ENST00000446807 1007 ntTSL 3 BASIC31.03■■■□□ 2.56
SHROOM4Q9ULL8 AC025442.1-201ENST00000521596 481 ntTSL 2 BASIC31.03■■■□□ 2.56
SHROOM4Q9ULL8 RPSAP52-203ENST00000622976 1023 ntBASIC31.03■■■□□ 2.56
SHROOM4Q9ULL8 GALNT2-201ENST00000366672 4454 ntAPPRIS P1 TSL 1 (best) BASIC31.03■■■□□ 2.56
SHROOM4Q9ULL8 EDN3-202ENST00000337938 2636 ntAPPRIS P4 TSL 1 (best) BASIC31.03■■■□□ 2.56
SHROOM4Q9ULL8 EML3-201ENST00000278845 3017 ntAPPRIS ALT1 TSL 5 BASIC31.03■■■□□ 2.56
SHROOM4Q9ULL8 U2AF2-201ENST00000308924 1698 ntAPPRIS P3 TSL 1 (best) BASIC31.03■■■□□ 2.56
SHROOM4Q9ULL8 SHISA5-219ENST00000612611 1677 ntTSL 5 BASIC31.03■■■□□ 2.56
SHROOM4Q9ULL8 AR-207ENST00000612010 3896 ntTSL 5 BASIC31.03■■■□□ 2.56
SHROOM4Q9ULL8 DOLK-201ENST00000372586 2090 ntAPPRIS P1 BASIC31.03■■■□□ 2.56
SHROOM4Q9ULL8 CPT2-210ENST00000637252 2739 ntTSL 5 BASIC31.03■■■□□ 2.56
SHROOM4Q9ULL8 ABLIM2-202ENST00000361581 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC31.03■■■□□ 2.56
SHROOM4Q9ULL8 GXYLT2-201ENST00000389617 3260 ntAPPRIS P1 TSL 5 BASIC31.03■■■□□ 2.56
SHROOM4Q9ULL8 GALNT9-201ENST00000328957 2410 ntAPPRIS P1 TSL 1 (best) BASIC31.03■■■□□ 2.56
SHROOM4Q9ULL8 ARPP19-201ENST00000249822 5301 ntAPPRIS P1 TSL 1 (best) BASIC31.03■■■□□ 2.56
SHROOM4Q9ULL8 FBLIM1-206ENST00000441801 1543 ntTSL 1 (best) BASIC31.03■■■□□ 2.56
SHROOM4Q9ULL8 DNM1-216ENST00000634267 2909 ntTSL 5 BASIC31.03■■■□□ 2.56
SHROOM4Q9ULL8 FCHO1-201ENST00000252771 3118 ntAPPRIS P1 TSL 5 BASIC31.03■■■□□ 2.56
SHROOM4Q9ULL8 TTC13-202ENST00000366662 3112 ntAPPRIS ALT2 TSL 1 (best) BASIC31.03■■■□□ 2.56
SHROOM4Q9ULL8 AL031731.1-201ENST00000642131 2094 ntBASIC31.02■■■□□ 2.56
SHROOM4Q9ULL8 CHMP5-201ENST00000223500 1477 ntAPPRIS P1 TSL 1 (best) BASIC31.02■■■□□ 2.56
SHROOM4Q9ULL8 FTH1-201ENST00000273550 1229 ntAPPRIS P1 TSL 1 (best) BASIC31.02■■■□□ 2.56
SHROOM4Q9ULL8 MIR1908-201ENST00000410394 80 ntBASIC31.02■■■□□ 2.56
SHROOM4Q9ULL8 HOXB-AS1-201ENST00000435312 806 ntTSL 5 BASIC31.02■■■□□ 2.56
SHROOM4Q9ULL8 LINC01784-201ENST00000438401 378 ntTSL 2 BASIC31.02■■■□□ 2.56
SHROOM4Q9ULL8 DSCR3-207ENST00000476950 937 ntTSL 2 BASIC31.02■■■□□ 2.56
SHROOM4Q9ULL8 AC104989.1-201ENST00000519711 778 ntBASIC31.02■■■□□ 2.56
SHROOM4Q9ULL8 FTH1-202ENST00000526640 786 ntTSL 2 BASIC31.02■■■□□ 2.56
SHROOM4Q9ULL8 AC013565.3-201ENST00000565547 450 ntTSL 3 BASIC31.02■■■□□ 2.56
SHROOM4Q9ULL8 MIR4538-201ENST00000581377 78 ntBASIC31.02■■■□□ 2.56
SHROOM4Q9ULL8 AC093726.1-201ENST00000608064 963 ntBASIC31.02■■■□□ 2.56
SHROOM4Q9ULL8 HLA-F-216ENST00000259951 1635 ntAPPRIS P4 BASIC31.02■■■□□ 2.56
SHROOM4Q9ULL8 TUBGCP3-202ENST00000375669 2723 ntTSL 1 (best) BASIC31.02■■■□□ 2.56
SHROOM4Q9ULL8 CCDC130-204ENST00000586600 1922 ntAPPRIS P1 TSL 5 BASIC31.02■■■□□ 2.56
SHROOM4Q9ULL8 TMED3-203ENST00000536821 2265 ntTSL 2 BASIC31.02■■■□□ 2.56
SHROOM4Q9ULL8 ZNF385A-203ENST00000394313 2430 ntTSL 1 (best) BASIC31.02■■■□□ 2.56
SHROOM4Q9ULL8 LITAF-202ENST00000381810 1527 ntTSL 5 BASIC31.02■■■□□ 2.56
SHROOM4Q9ULL8 FTSJ1-202ENST00000348411 1892 ntAPPRIS P4 TSL 1 (best) BASIC31.02■■■□□ 2.56
SHROOM4Q9ULL8 SCP2-201ENST00000371509 1889 ntTSL 1 (best) BASIC31.02■■■□□ 2.56
SHROOM4Q9ULL8 LINC01660-203ENST00000618517 1859 ntTSL 2 BASIC31.02■■■□□ 2.56
SHROOM4Q9ULL8 HIST1H2AC-203ENST00000602637 1462 ntAPPRIS P1 TSL 2 BASIC31.02■■■□□ 2.56
SHROOM4Q9ULL8 STRADA-254ENST00000640999 2336 ntAPPRIS ALT1 TSL 5 BASIC31.02■■■□□ 2.56
SHROOM4Q9ULL8 RNF128-201ENST00000255499 2817 ntAPPRIS P1 TSL 1 (best) BASIC31.02■■■□□ 2.56
SHROOM4Q9ULL8 CEP83-AS1-201ENST00000623122 2482 ntBASIC31.02■■■□□ 2.56
SHROOM4Q9ULL8 CATSPERZ-201ENST00000328404 743 ntAPPRIS P5 TSL 1 (best) BASIC31.01■■■□□ 2.56
SHROOM4Q9ULL8 MRNIP-202ENST00000376931 1004 ntAPPRIS ALT2 TSL 2 BASIC31.01■■■□□ 2.56
SHROOM4Q9ULL8 AC078942.1-201ENST00000448698 589 ntTSL 4 BASIC31.01■■■□□ 2.56
SHROOM4Q9ULL8 AC091729.1-201ENST00000449721 869 ntTSL 3 BASIC31.01■■■□□ 2.56
SHROOM4Q9ULL8 AC092910.3-202ENST00000469070 982 ntTSL 3 BASIC31.01■■■□□ 2.56
SHROOM4Q9ULL8 QPRT-203ENST00000562473 579 ntTSL 3 BASIC31.01■■■□□ 2.56
SHROOM4Q9ULL8 AC004477.1-202ENST00000584428 539 ntTSL 2 BASIC31.01■■■□□ 2.56
SHROOM4Q9ULL8 AC111170.2-201ENST00000585369 768 ntTSL 3 BASIC31.01■■■□□ 2.56
SHROOM4Q9ULL8 SRD5A3P1-201ENST00000603021 949 ntBASIC31.01■■■□□ 2.56
SHROOM4Q9ULL8 RTKN-203ENST00000305557 2646 ntAPPRIS P3 TSL 5 BASIC31.01■■■□□ 2.56
SHROOM4Q9ULL8 CHGA-201ENST00000216492 2063 ntAPPRIS P1 TSL 1 (best) BASIC31.01■■■□□ 2.56
SHROOM4Q9ULL8 NR4A2-210ENST00000429376 1571 ntTSL 5 BASIC31.01■■■□□ 2.56
SHROOM4Q9ULL8 TXNDC2-204ENST00000536353 1703 ntTSL 5 BASIC31.01■■■□□ 2.56
SHROOM4Q9ULL8 GGT4P-201ENST00000623672 1708 ntBASIC31.01■■■□□ 2.56
SHROOM4Q9ULL8 FBXL3-201ENST00000355619 3503 ntAPPRIS P1 TSL 1 (best) BASIC31.01■■■□□ 2.56
SHROOM4Q9ULL8 ZNF394-201ENST00000337673 2179 ntAPPRIS P1 TSL 1 (best) BASIC31.01■■■□□ 2.55
SHROOM4Q9ULL8 DKFZP434K028-202ENST00000536405 2466 ntTSL 1 (best) BASIC31.01■■■□□ 2.55
SHROOM4Q9ULL8 MUC1-228ENST00000620103 1811 ntAPPRIS ALT2 TSL 5 BASIC31.01■■■□□ 2.55
SHROOM4Q9ULL8 SEMA3B-204ENST00000433753 2755 ntAPPRIS ALT1 TSL 1 (best) BASIC31.01■■■□□ 2.55
SHROOM4Q9ULL8 SLFNL1-205ENST00000439569 2117 ntAPPRIS P3 TSL 2 BASIC31.01■■■□□ 2.55
SHROOM4Q9ULL8 PARD3-201ENST00000340077 3518 ntTSL 1 (best) BASIC31.01■■■□□ 2.55
SHROOM4Q9ULL8 KLRG1-201ENST00000266551 1335 ntTSL 1 (best) BASIC31.01■■■□□ 2.55
SHROOM4Q9ULL8 TEAD3-204ENST00000639578 1308 ntAPPRIS P2 TSL 1 (best) BASIC31.01■■■□□ 2.55
SHROOM4Q9ULL8 LGI4-202ENST00000392225 2891 ntTSL 5 BASIC31.01■■■□□ 2.55
SHROOM4Q9ULL8 CDIP1-206ENST00000563507 1463 ntTSL 2 BASIC31.01■■■□□ 2.55
SHROOM4Q9ULL8 PTGES3-201ENST00000262033 1920 ntAPPRIS P1 TSL 1 (best) BASIC31.01■■■□□ 2.55
SHROOM4Q9ULL8 PGAP3-211ENST00000619169 2094 ntTSL 2 BASIC31.01■■■□□ 2.55
SHROOM4Q9ULL8 RPS5-201ENST00000196551 740 ntAPPRIS P1 TSL 1 (best) BASIC31.01■■■□□ 2.55
SHROOM4Q9ULL8 EN2-201ENST00000297375 3395 ntAPPRIS P1 TSL 1 (best) BASIC31.01■■■□□ 2.55
SHROOM4Q9ULL8 TPSD1-202ENST00000397534 896 ntAPPRIS ALT2 TSL 5 BASIC31.01■■■□□ 2.55
SHROOM4Q9ULL8 DIRC3-201ENST00000423123 552 ntAPPRIS P1 TSL 4 BASIC31.01■■■□□ 2.55
SHROOM4Q9ULL8 SYNPR-202ENST00000450542 1004 ntTSL 1 (best) BASIC31.01■■■□□ 2.55
SHROOM4Q9ULL8 AC079296.1-201ENST00000531592 560 ntTSL 3 BASIC31.01■■■□□ 2.55
SHROOM4Q9ULL8 CTBP2P3-201ENST00000585629 1255 ntBASIC31.01■■■□□ 2.55
SHROOM4Q9ULL8 NOS1AP-206ENST00000530878 2894 ntAPPRIS ALT2 TSL 1 (best) BASIC31.01■■■□□ 2.55
SHROOM4Q9ULL8 HOXB6-203ENST00000484302 1960 ntAPPRIS P1 TSL 2 BASIC31■■■□□ 2.55
SHROOM4Q9ULL8 MAGEA2-201ENST00000595583 1830 ntAPPRIS P1 TSL 1 (best) BASIC31■■■□□ 2.55
SHROOM4Q9ULL8 DARS-201ENST00000264161 2361 ntAPPRIS P1 TSL 1 (best) BASIC31■■■□□ 2.55
SHROOM4Q9ULL8 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC31■■■□□ 2.55
SHROOM4Q9ULL8 TLE3-201ENST00000317509 5207 ntTSL 1 (best) BASIC31■■■□□ 2.55
SHROOM4Q9ULL8 SLC22A23-205ENST00000436008 6641 ntAPPRIS ALT2 TSL 5 BASIC31■■■□□ 2.55
SHROOM4Q9ULL8 POLR1D-207ENST00000621089 1606 ntTSL 1 (best) BASIC31■■■□□ 2.55
SHROOM4Q9ULL8 GPR108-202ENST00000430424 2009 ntAPPRIS ALT2 TSL 5 BASIC31■■■□□ 2.55
Retrieved 100 of 98,524 protein–RNA pairs in 30.7 ms