Protein–RNA interactions for Protein: Q9NXB0

MKS1, Meckel syndrome type 1 protein, humanhuman

Predictions only

Length 559 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MKS1Q9NXB0 CHID1-201ENST00000323578 3374 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
MKS1Q9NXB0 TRPV4-204ENST00000536838 2514 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
MKS1Q9NXB0 ACOX3-202ENST00000413009 2374 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
MKS1Q9NXB0 RHCE-201ENST00000294413 1591 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
MKS1Q9NXB0 COLEC11-209ENST00000418971 1595 ntTSL 2 BASIC16.3■□□□□ 0.2
MKS1Q9NXB0 PDGFA-203ENST00000402802 2305 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
MKS1Q9NXB0 SLC7A5-201ENST00000261622 4537 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
MKS1Q9NXB0 REPS1-208ENST00000450536 4537 ntAPPRIS ALT1 TSL 1 (best) BASIC16.3■□□□□ 0.2
MKS1Q9NXB0 CHTF18-202ENST00000317063 2988 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
MKS1Q9NXB0 AC073324.2-201ENST00000626532 2941 ntTSL 4 BASIC16.3■□□□□ 0.2
MKS1Q9NXB0 CACFD1-206ENST00000540581 2880 ntAPPRIS ALT2 TSL 2 BASIC16.3■□□□□ 0.2
MKS1Q9NXB0 TMTC2-201ENST00000321196 5681 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
MKS1Q9NXB0 RUNX2-204ENST00000371438 5698 ntAPPRIS P4 TSL 5 BASIC16.3■□□□□ 0.2
MKS1Q9NXB0 BCL2L12-203ENST00000441864 1371 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
MKS1Q9NXB0 PAN3-AS1-201ENST00000563843 1351 ntBASIC16.3■□□□□ 0.2
MKS1Q9NXB0 EIF2AK4-201ENST00000263791 5499 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
MKS1Q9NXB0 RFK-201ENST00000376736 2684 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
MKS1Q9NXB0 AC092850.2-201ENST00000623821 2697 ntBASIC16.3■□□□□ 0.2
MKS1Q9NXB0 NDUFB9-206ENST00000522532 1319 ntTSL 2 BASIC16.3■□□□□ 0.2
MKS1Q9NXB0 ASS1-204ENST00000372394 1973 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
MKS1Q9NXB0 LYNX1-206ENST00000621401 4537 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
MKS1Q9NXB0 ARHGAP9-203ENST00000424809 2569 ntTSL 2 BASIC16.3■□□□□ 0.2
MKS1Q9NXB0 FIBP-202ENST00000357519 1248 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
MKS1Q9NXB0 AL355310.2-201ENST00000369843 688 ntTSL 3 BASIC16.3■□□□□ 0.2
MKS1Q9NXB0 AL022314.1-201ENST00000414203 464 ntTSL 5 BASIC16.3■□□□□ 0.2
MKS1Q9NXB0 UBXN10-AS1-201ENST00000442226 510 ntTSL 2 BASIC16.3■□□□□ 0.2
MKS1Q9NXB0 FGFR3P6-201ENST00000457012 610 ntBASIC16.3■□□□□ 0.2
MKS1Q9NXB0 ZNF346-205ENST00000506693 1276 ntTSL 2 BASIC16.3■□□□□ 0.2
MKS1Q9NXB0 SART3-203ENST00000546611 1184 ntBASIC16.3■□□□□ 0.2
MKS1Q9NXB0 MRPL52-208ENST00000553711 586 ntTSL 3 BASIC16.3■□□□□ 0.2
MKS1Q9NXB0 MTDHP3-201ENST00000594186 672 ntBASIC16.3■□□□□ 0.2
MKS1Q9NXB0 SMIM22-210ENST00000615471 928 ntAPPRIS ALT2 TSL 3 BASIC16.3■□□□□ 0.2
MKS1Q9NXB0 AL162497.1-201ENST00000615635 518 ntTSL 4 BASIC16.3■□□□□ 0.2
MKS1Q9NXB0 GGTLC5P-201ENST00000617623 998 ntBASIC16.3■□□□□ 0.2
MKS1Q9NXB0 CNKSR1-202ENST00000374253 2538 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
MKS1Q9NXB0 PAPOLB-201ENST00000404991 4262 ntAPPRIS P1 BASIC16.3■□□□□ 0.2
MKS1Q9NXB0 FAM83A-202ENST00000518448 5393 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
MKS1Q9NXB0 TMC5-202ENST00000381414 4755 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
MKS1Q9NXB0 ROR2-202ENST00000375715 2993 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
MKS1Q9NXB0 MAGEA8-201ENST00000286482 1778 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
MKS1Q9NXB0 COX10-201ENST00000261643 2873 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
MKS1Q9NXB0 FBXW9-201ENST00000393261 1738 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
MKS1Q9NXB0 CCDC144A-202ENST00000340621 2214 ntTSL 2 BASIC16.3■□□□□ 0.2
MKS1Q9NXB0 MGEA5-203ENST00000370094 3314 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
MKS1Q9NXB0 DNAJC2-203ENST00000379263 2167 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
MKS1Q9NXB0 AC087164.1-202ENST00000583062 2158 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
MKS1Q9NXB0 AC004805.1-201ENST00000577662 1616 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
MKS1Q9NXB0 ATP6AP2-225ENST00000637482 1648 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
MKS1Q9NXB0 GAS7-203ENST00000432992 4970 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
MKS1Q9NXB0 HNF1B-207ENST00000621123 1971 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
MKS1Q9NXB0 CHMP5-201ENST00000223500 1477 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
MKS1Q9NXB0 TLE3-215ENST00000559048 2918 ntTSL 2 BASIC16.29■□□□□ 0.2
MKS1Q9NXB0 MX1-210ENST00000455164 2810 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
MKS1Q9NXB0 SLC2A9-201ENST00000264784 1850 ntAPPRIS P4 TSL 1 (best) BASIC16.29■□□□□ 0.2
MKS1Q9NXB0 GPC1-201ENST00000264039 3713 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
MKS1Q9NXB0 DHX40-202ENST00000425628 2255 ntTSL 2 BASIC16.29■□□□□ 0.2
MKS1Q9NXB0 ZBTB7C-221ENST00000590800 4947 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
MKS1Q9NXB0 MMADHC-203ENST00000428879 1726 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
MKS1Q9NXB0 MED17-201ENST00000251871 5142 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
MKS1Q9NXB0 SLC29A1-206ENST00000371755 2112 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
MKS1Q9NXB0 TIMM17B-202ENST00000396779 1099 ntTSL 5 BASIC16.29■□□□□ 0.2
MKS1Q9NXB0 SEC61G-203ENST00000415949 732 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
MKS1Q9NXB0 CYHR1-203ENST00000424149 1162 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
MKS1Q9NXB0 RPL29-204ENST00000479017 670 ntAPPRIS P1 TSL 3 BASIC16.29■□□□□ 0.2
MKS1Q9NXB0 CCND3-213ENST00000510503 1257 ntTSL 3 BASIC16.29■□□□□ 0.2
MKS1Q9NXB0 LINC02237-202ENST00000521904 477 ntTSL 3 BASIC16.29■□□□□ 0.2
MKS1Q9NXB0 YPEL3-204ENST00000563788 730 ntAPPRIS P1 TSL 3 BASIC16.29■□□□□ 0.2
MKS1Q9NXB0 BLOC1S6-214ENST00000567461 1052 ntTSL 2 BASIC16.29■□□□□ 0.2
MKS1Q9NXB0 LINC01956-202ENST00000584273 612 ntTSL 3 BASIC16.29■□□□□ 0.2
MKS1Q9NXB0 CYGB-205ENST00000590175 830 ntTSL 3 BASIC16.29■□□□□ 0.2
MKS1Q9NXB0 GEMIN7-203ENST00000591607 848 ntAPPRIS P1 TSL 3 BASIC16.29■□□□□ 0.2
MKS1Q9NXB0 AC092119.3-201ENST00000612618 583 ntBASIC16.29■□□□□ 0.2
MKS1Q9NXB0 TEAD4-202ENST00000359864 1690 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
MKS1Q9NXB0 ABTB1-206ENST00000468137 2065 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
MKS1Q9NXB0 PPP1R3G-201ENST00000405617 4907 ntAPPRIS P1 BASIC16.29■□□□□ 0.2
MKS1Q9NXB0 LOX-206ENST00000639739 1626 ntTSL 5 BASIC16.29■□□□□ 0.2
MKS1Q9NXB0 SLC25A45-214ENST00000534028 2432 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
MKS1Q9NXB0 AC010642.2-201ENST00000634676 2413 ntTSL 5 BASIC16.29■□□□□ 0.2
MKS1Q9NXB0 TBC1D1-203ENST00000402522 1567 ntTSL 2 BASIC16.29■□□□□ 0.2
MKS1Q9NXB0 COQ6-220ENST00000629426 1538 ntTSL 5 BASIC16.29■□□□□ 0.2
MKS1Q9NXB0 RTN3-205ENST00000356000 2645 ntTSL 2 BASIC16.29■□□□□ 0.2
MKS1Q9NXB0 DUS2-202ENST00000432752 1864 ntTSL 2 BASIC16.29■□□□□ 0.2
MKS1Q9NXB0 SALL3-206ENST00000616649 2958 ntTSL 5 BASIC16.29■□□□□ 0.2
MKS1Q9NXB0 CYP51A1P2-201ENST00000419457 1499 ntBASIC16.29■□□□□ 0.2
MKS1Q9NXB0 CDH1-202ENST00000422392 2567 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
MKS1Q9NXB0 MARCH1-203ENST00000503008 5877 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
MKS1Q9NXB0 SEMA4F-201ENST00000339773 2177 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
MKS1Q9NXB0 MEGF6-201ENST00000294599 4501 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
MKS1Q9NXB0 LDLR-204ENST00000545707 2429 ntTSL 2 BASIC16.28■□□□□ 0.2
MKS1Q9NXB0 GNAS-212ENST00000371098 1719 ntTSL 5 BASIC16.28■□□□□ 0.2
MKS1Q9NXB0 IRF8-203ENST00000563180 1394 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
MKS1Q9NXB0 DKC1-213ENST00000620277 3079 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
MKS1Q9NXB0 PARP16-201ENST00000261888 2731 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
MKS1Q9NXB0 PHTF1-201ENST00000357783 2747 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
MKS1Q9NXB0 ITGA3-202ENST00000320031 4888 ntAPPRIS P2 TSL 1 (best) BASIC16.28■□□□□ 0.2
MKS1Q9NXB0 CCDC8-201ENST00000307522 3213 ntAPPRIS P1 BASIC16.28■□□□□ 0.2
MKS1Q9NXB0 RDX-201ENST00000343115 4491 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
MKS1Q9NXB0 VKORC1-201ENST00000300851 876 ntTSL 2 BASIC16.28■□□□□ 0.2
MKS1Q9NXB0 CXCL12-204ENST00000395793 665 ntTSL 5 BASIC16.28■□□□□ 0.2
MKS1Q9NXB0 HOXD12-201ENST00000404162 841 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 26.3 ms