Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 PCDHAC2-201ENST00000289269 5963 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
SIX2Q9NPC8 SYT12-203ENST00000525457 1678 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
SIX2Q9NPC8 BAIAP2-219ENST00000575245 2229 ntTSL 5 BASIC17.67■□□□□ 0.42
SIX2Q9NPC8 NIPA2-204ENST00000398014 3130 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
SIX2Q9NPC8 BECN1-213ENST00000590099 2087 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
SIX2Q9NPC8 IKZF4-206ENST00000547791 1712 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
SIX2Q9NPC8 LGMN-211ENST00000555699 1728 ntTSL 5 BASIC17.67■□□□□ 0.42
SIX2Q9NPC8 INPP5B-201ENST00000373021 3934 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
SIX2Q9NPC8 BAP1-202ENST00000460680 3937 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
SIX2Q9NPC8 TUBA4B-203ENST00000490341 1380 ntAPPRIS P1 TSL 2 BASIC17.66■□□□□ 0.42
SIX2Q9NPC8 LONRF3-203ENST00000422289 2898 ntTSL 2 BASIC17.66■□□□□ 0.42
SIX2Q9NPC8 AC026412.1-203ENST00000507841 2338 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
SIX2Q9NPC8 TEF-201ENST00000266304 4394 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
SIX2Q9NPC8 CBWD1-201ENST00000314367 1771 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
SIX2Q9NPC8 AC073439.1-201ENST00000624121 1774 ntBASIC17.66■□□□□ 0.42
SIX2Q9NPC8 ANXA11-203ENST00000422982 2534 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
SIX2Q9NPC8 AC105917.1-201ENST00000506637 2539 ntBASIC17.66■□□□□ 0.42
SIX2Q9NPC8 HNRNPUL2-BSCL2-201ENST00000403734 4001 ntAPPRIS P1 TSL 2 BASIC17.66■□□□□ 0.42
SIX2Q9NPC8 LZTS3-202ENST00000337576 4238 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
SIX2Q9NPC8 LRRN2-203ENST00000367177 3463 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
SIX2Q9NPC8 IKBIP-201ENST00000299157 3189 ntAPPRIS P4 TSL 1 (best) BASIC17.66■□□□□ 0.42
SIX2Q9NPC8 ELMO1-209ENST00000448602 2621 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
SIX2Q9NPC8 FGFBP2-201ENST00000259989 1168 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
SIX2Q9NPC8 C6orf226-201ENST00000408925 552 ntAPPRIS P1 BASIC17.66■□□□□ 0.42
SIX2Q9NPC8 SAPCD1-209ENST00000425424 820 ntAPPRIS ALT2 TSL 5 BASIC17.66■□□□□ 0.42
SIX2Q9NPC8 MMP24-AS1-209ENST00000456790 712 ntAPPRIS P1 TSL 2 BASIC17.66■□□□□ 0.42
SIX2Q9NPC8 HS6ST1P1-201ENST00000481504 1234 ntBASIC17.66■□□□□ 0.42
SIX2Q9NPC8 KRT18P34-201ENST00000488218 1270 ntBASIC17.66■□□□□ 0.42
SIX2Q9NPC8 KRTAP5-9-201ENST00000528743 1136 ntAPPRIS P1 BASIC17.66■□□□□ 0.42
SIX2Q9NPC8 OR5AH1P-202ENST00000597822 431 ntTSL 3 BASIC17.66■□□□□ 0.42
SIX2Q9NPC8 AC068137.2-201ENST00000605408 478 ntBASIC17.66■□□□□ 0.42
SIX2Q9NPC8 AC120114.3-201ENST00000611923 658 ntBASIC17.66■□□□□ 0.42
SIX2Q9NPC8 CAMKV-204ENST00000466940 1475 ntTSL 2 BASIC17.66■□□□□ 0.42
SIX2Q9NPC8 ERP29-203ENST00000546477 1698 ntTSL 3 BASIC17.66■□□□□ 0.42
SIX2Q9NPC8 AC006063.2-201ENST00000640161 1696 ntTSL 5 BASIC17.66■□□□□ 0.42
SIX2Q9NPC8 HNRNPA3-201ENST00000392524 2067 ntAPPRIS P3 TSL 5 BASIC17.66■□□□□ 0.42
SIX2Q9NPC8 RECQL4-210ENST00000621189 3896 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
SIX2Q9NPC8 TBC1D20-201ENST00000354200 4466 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
SIX2Q9NPC8 PPP3CA-201ENST00000323055 4519 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
SIX2Q9NPC8 ANKK1-201ENST00000303941 2543 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
SIX2Q9NPC8 CD55-204ENST00000367064 2760 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
SIX2Q9NPC8 ADD1-201ENST00000264758 4045 ntAPPRIS P3 TSL 5 BASIC17.66■□□□□ 0.42
SIX2Q9NPC8 MAP3K9-201ENST00000381250 4025 ntAPPRIS ALT2 TSL 5 BASIC17.66■□□□□ 0.42
SIX2Q9NPC8 MPP3-201ENST00000398389 2182 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
SIX2Q9NPC8 SURF4-209ENST00000618229 3200 ntTSL 2 BASIC17.66■□□□□ 0.42
SIX2Q9NPC8 PLEKHG4-205ENST00000450733 4480 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
SIX2Q9NPC8 PXK-204ENST00000383716 3035 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
SIX2Q9NPC8 PARVB-204ENST00000406477 1569 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
SIX2Q9NPC8 FAM60A-203ENST00000454658 1555 ntAPPRIS P1 TSL 2 BASIC17.66■□□□□ 0.42
SIX2Q9NPC8 AC008677.1-201ENST00000519230 1561 ntBASIC17.66■□□□□ 0.42
SIX2Q9NPC8 PIPOX-201ENST00000323372 2414 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
SIX2Q9NPC8 TPSAB1-202ENST00000461509 1357 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
SIX2Q9NPC8 DCP1B-202ENST00000535873 2231 ntTSL 2 BASIC17.66■□□□□ 0.42
SIX2Q9NPC8 RALGPS1-203ENST00000373434 2466 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
SIX2Q9NPC8 AC098591.1-201ENST00000381811 1613 ntTSL 2 BASIC17.65■□□□□ 0.42
SIX2Q9NPC8 NDUFB2-AS1-201ENST00000465466 1648 ntTSL 2 BASIC17.65■□□□□ 0.42
SIX2Q9NPC8 APOLD1-202ENST00000356591 4646 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
SIX2Q9NPC8 TUBB6-211ENST00000591208 1492 ntTSL 5 BASIC17.65■□□□□ 0.42
SIX2Q9NPC8 KTN1-AS1-202ENST00000412224 2185 ntTSL 2 BASIC17.65■□□□□ 0.42
SIX2Q9NPC8 CDKN2B-AS1-208ENST00000580576 2175 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
SIX2Q9NPC8 FAM49B-224ENST00000522941 1700 ntTSL 5 BASIC17.65■□□□□ 0.42
SIX2Q9NPC8 BRPF1-201ENST00000383829 4736 ntAPPRIS ALT1 TSL 1 (best) BASIC17.65■□□□□ 0.42
SIX2Q9NPC8 BEX3-201ENST00000361298 921 ntTSL 2 BASIC17.65■□□□□ 0.42
SIX2Q9NPC8 SATB1-AS1-201ENST00000414198 737 ntTSL 2 BASIC17.65■□□□□ 0.42
SIX2Q9NPC8 AC074386.1-202ENST00000463561 864 ntBASIC17.65■□□□□ 0.42
SIX2Q9NPC8 C8orf46-213ENST00000521495 557 ntTSL 4 BASIC17.65■□□□□ 0.42
SIX2Q9NPC8 TMEM41B-203ENST00000527813 803 ntTSL 5 BASIC17.65■□□□□ 0.42
SIX2Q9NPC8 PIN1-206ENST00000587625 878 ntTSL 2 BASIC17.65■□□□□ 0.42
SIX2Q9NPC8 AC099522.2-201ENST00000607001 744 ntBASIC17.65■□□□□ 0.42
SIX2Q9NPC8 IRF1-211ENST00000613424 821 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
SIX2Q9NPC8 PDCD2-208ENST00000541970 3378 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
SIX2Q9NPC8 CDC42EP3-201ENST00000295324 5700 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
SIX2Q9NPC8 MEAF6-201ENST00000296214 1525 ntAPPRIS ALT1 TSL 1 (best) BASIC17.65■□□□□ 0.42
SIX2Q9NPC8 PSMC3-201ENST00000298852 1544 ntAPPRIS P2 TSL 1 (best) BASIC17.65■□□□□ 0.42
SIX2Q9NPC8 PCBP1-201ENST00000303577 1750 ntAPPRIS P1 BASIC17.65■□□□□ 0.42
SIX2Q9NPC8 TTYH2-206ENST00000529107 2015 ntTSL 2 BASIC17.65■□□□□ 0.42
SIX2Q9NPC8 SERTM1-201ENST00000315190 3207 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
SIX2Q9NPC8 AL512625.1-201ENST00000305709 2541 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
SIX2Q9NPC8 CLN3-216ENST00000565316 1318 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
SIX2Q9NPC8 SIX6-201ENST00000327720 2787 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
SIX2Q9NPC8 BFSP2-201ENST00000302334 1558 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
SIX2Q9NPC8 ABHD2-207ENST00000565973 2347 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
SIX2Q9NPC8 ATP6V0E2-201ENST00000421974 2605 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
SIX2Q9NPC8 RASA4-204ENST00000462172 2634 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
SIX2Q9NPC8 COL18A1-202ENST00000355480 5924 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
SIX2Q9NPC8 GNA13-201ENST00000439174 4922 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
SIX2Q9NPC8 HECTD2-204ENST00000446394 4939 ntTSL 2 BASIC17.65■□□□□ 0.42
SIX2Q9NPC8 SUCLA2-201ENST00000378654 2192 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.42
SIX2Q9NPC8 MBD4-206ENST00000507208 2194 ntAPPRIS ALT2 TSL 2 BASIC17.64■□□□□ 0.42
SIX2Q9NPC8 MPL-201ENST00000372470 1908 ntAPPRIS P2 TSL 1 (best) BASIC17.64■□□□□ 0.42
SIX2Q9NPC8 ITPRIPL1-205ENST00000536814 1947 ntAPPRIS P1 TSL 3 BASIC17.64■□□□□ 0.42
SIX2Q9NPC8 HIST1H2AC-202ENST00000377791 1654 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.42
SIX2Q9NPC8 CFAP43-203ENST00000369719 1434 ntTSL 2 BASIC17.64■□□□□ 0.42
SIX2Q9NPC8 BSCL2-210ENST00000421906 1440 ntAPPRIS P3 TSL 5 BASIC17.64■□□□□ 0.42
SIX2Q9NPC8 HSD17B7P2-202ENST00000494540 1401 ntTSL 1 (best) BASIC17.64■□□□□ 0.42
SIX2Q9NPC8 SPCS2-201ENST00000263672 2708 ntAPPRIS P2 TSL 1 (best) BASIC17.64■□□□□ 0.42
SIX2Q9NPC8 DCAF11-217ENST00000559115 2711 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.42
SIX2Q9NPC8 RELT-201ENST00000064780 3535 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.42
SIX2Q9NPC8 MRC2-201ENST00000303375 5988 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
SIX2Q9NPC8 SLC29A1-203ENST00000371724 2275 ntAPPRIS P1 TSL 5 BASIC17.64■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 51.1 ms