Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 C2orf88-205ENST00000443551 692 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
TRAIPQ9BWF2 AC022201.2-201ENST00000445084 287 ntTSL 5 BASIC18.07■□□□□ 0.48
TRAIPQ9BWF2 AL391069.2-202ENST00000447795 622 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
TRAIPQ9BWF2 AGGF1-204ENST00000506806 1142 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
TRAIPQ9BWF2 LINC01089-211ENST00000543334 1282 ntTSL 4 BASIC18.07■□□□□ 0.48
TRAIPQ9BWF2 PTPRS-208ENST00000590509 893 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
TRAIPQ9BWF2 AC010507.1-202ENST00000633286 381 ntTSL 3 BASIC18.07■□□□□ 0.48
TRAIPQ9BWF2 AL139011.1-202ENST00000642063 584 ntBASIC18.07■□□□□ 0.48
TRAIPQ9BWF2 ZNF79-204ENST00000617266 1969 ntTSL 3 BASIC18.07■□□□□ 0.48
TRAIPQ9BWF2 ATAD3A-207ENST00000536055 2332 ntTSL 2 BASIC18.07■□□□□ 0.48
TRAIPQ9BWF2 KIFC3-203ENST00000445690 3379 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
TRAIPQ9BWF2 PNO1-201ENST00000263657 2286 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
TRAIPQ9BWF2 ABCC5-203ENST00000382494 1923 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
TRAIPQ9BWF2 AL365277.1-202ENST00000331856 2241 ntTSL 2 BASIC18.07■□□□□ 0.48
TRAIPQ9BWF2 AGXT-201ENST00000307503 1865 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
TRAIPQ9BWF2 WDR6-202ENST00000415265 1883 ntTSL 2 BASIC18.07■□□□□ 0.48
TRAIPQ9BWF2 FBXO18-201ENST00000362091 3560 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
TRAIPQ9BWF2 SYTL3-202ENST00000360448 2504 ntAPPRIS ALT1 TSL 5 BASIC18.07■□□□□ 0.48
TRAIPQ9BWF2 SLC41A3-203ENST00000360370 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
TRAIPQ9BWF2 CAMKV-217ENST00000620470 1485 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
TRAIPQ9BWF2 TTLL10-201ENST00000379288 2114 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
TRAIPQ9BWF2 UCHL5-206ENST00000367455 5327 ntAPPRIS P3 TSL 1 (best) BASIC18.07■□□□□ 0.48
TRAIPQ9BWF2 ELOVL7-205ENST00000508821 3994 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
TRAIPQ9BWF2 KCNJ5-201ENST00000338350 1734 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
TRAIPQ9BWF2 ACTRT3-201ENST00000330368 2005 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
TRAIPQ9BWF2 FGFR2-207ENST00000359354 1680 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
TRAIPQ9BWF2 MINK1-202ENST00000355280 4961 ntAPPRIS P4 TSL 1 (best) BASIC18.06■□□□□ 0.48
TRAIPQ9BWF2 SEPT6-209ENST00000489216 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC18.06■□□□□ 0.48
TRAIPQ9BWF2 DUOXA1-202ENST00000430224 1317 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
TRAIPQ9BWF2 EZR-202ENST00000367075 3096 ntAPPRIS P2 TSL 1 (best) BASIC18.06■□□□□ 0.48
TRAIPQ9BWF2 CDK8-201ENST00000381527 3055 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
TRAIPQ9BWF2 ADCYAP1R1-203ENST00000409363 1889 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
TRAIPQ9BWF2 ALDH3A1-212ENST00000494157 1572 ntTSL 3 BASIC18.06■□□□□ 0.48
TRAIPQ9BWF2 LINC00200-201ENST00000425630 2434 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
TRAIPQ9BWF2 SLC8A3-203ENST00000357887 5259 ntTSL 5 BASIC18.06■□□□□ 0.48
TRAIPQ9BWF2 SLC8A3-204ENST00000381269 5268 ntAPPRIS ALT1 TSL 1 (best) BASIC18.06■□□□□ 0.48
TRAIPQ9BWF2 ERAS-201ENST00000338270 1266 ntAPPRIS P1 BASIC18.06■□□□□ 0.48
TRAIPQ9BWF2 WWOX-201ENST00000355860 710 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
TRAIPQ9BWF2 ZNF655-216ENST00000449244 544 ntTSL 4 BASIC18.06■□□□□ 0.48
TRAIPQ9BWF2 SNX21-206ENST00000462307 1043 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
TRAIPQ9BWF2 AC092691.1-201ENST00000484092 554 ntTSL 4 BASIC18.06■□□□□ 0.48
TRAIPQ9BWF2 FBXO4-206ENST00000509134 1284 ntTSL 5 BASIC18.06■□□□□ 0.48
TRAIPQ9BWF2 BEST1-205ENST00000526988 1263 ntTSL 2 BASIC18.06■□□□□ 0.48
TRAIPQ9BWF2 GABARAP-205ENST00000573928 476 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
TRAIPQ9BWF2 PACS2-202ENST00000430725 2944 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
TRAIPQ9BWF2 TNK2-AS1-201ENST00000458180 2096 ntTSL 2 BASIC18.06■□□□□ 0.48
TRAIPQ9BWF2 ZBTB22-207ENST00000418724 2645 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
TRAIPQ9BWF2 RAB23-202ENST00000468148 4837 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
TRAIPQ9BWF2 SNX33P1-201ENST00000592116 1762 ntBASIC18.06■□□□□ 0.48
TRAIPQ9BWF2 HCRTR1-203ENST00000403528 2003 ntAPPRIS P1 TSL 5 BASIC18.06■□□□□ 0.48
TRAIPQ9BWF2 NFATC4-222ENST00000555590 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
TRAIPQ9BWF2 CRTC3-201ENST00000268184 2537 ntAPPRIS P3 TSL 1 (best) BASIC18.06■□□□□ 0.48
TRAIPQ9BWF2 AL139384.1-201ENST00000612143 3047 ntBASIC18.06■□□□□ 0.48
TRAIPQ9BWF2 ZDHHC9-202ENST00000371064 2473 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
TRAIPQ9BWF2 TIA1-206ENST00000445587 1440 ntTSL 5 BASIC18.06■□□□□ 0.48
TRAIPQ9BWF2 OS9-205ENST00000413095 1660 ntTSL 2 BASIC18.06■□□□□ 0.48
TRAIPQ9BWF2 CCNA1-203ENST00000625767 1699 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
TRAIPQ9BWF2 HYAL3-201ENST00000336307 1942 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
TRAIPQ9BWF2 C9orf62-201ENST00000623103 1924 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
TRAIPQ9BWF2 LMF1-201ENST00000262301 2621 ntAPPRIS P1 TSL 5 BASIC18.05■□□□□ 0.48
TRAIPQ9BWF2 CNTNAP3-205ENST00000377659 2649 ntTSL 2 BASIC18.05■□□□□ 0.48
TRAIPQ9BWF2 CDKN1A-204ENST00000448526 2104 ntAPPRIS P1 TSL 3 BASIC18.05■□□□□ 0.48
TRAIPQ9BWF2 HSF2-202ENST00000452194 2643 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
TRAIPQ9BWF2 EIF5A-206ENST00000571955 1366 ntAPPRIS P1 TSL 5 BASIC18.05■□□□□ 0.48
TRAIPQ9BWF2 KCNMA1-261ENST00000639486 8850 ntAPPRIS ALT2 TSL 5 BASIC18.05■□□□□ 0.48
TRAIPQ9BWF2 C3orf58-201ENST00000315691 4346 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
TRAIPQ9BWF2 POMT1-208ENST00000423007 3320 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
TRAIPQ9BWF2 RAB15-203ENST00000533601 3515 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
TRAIPQ9BWF2 TNIP1-220ENST00000610535 2726 ntTSL 5 BASIC18.05■□□□□ 0.48
TRAIPQ9BWF2 CSF1-204ENST00000369802 2484 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
TRAIPQ9BWF2 DKFZP434K028-202ENST00000536405 2466 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
TRAIPQ9BWF2 FOXO1B-201ENST00000504678 1527 ntBASIC18.05■□□□□ 0.48
TRAIPQ9BWF2 USP13-201ENST00000263966 8323 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
TRAIPQ9BWF2 RXRB-201ENST00000374680 2908 ntAPPRIS P3 TSL 1 (best) BASIC18.05■□□□□ 0.48
TRAIPQ9BWF2 TMUB2-204ENST00000538716 1953 ntAPPRIS ALT1 TSL 2 BASIC18.05■□□□□ 0.48
TRAIPQ9BWF2 DYNLL1-201ENST00000242577 720 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
TRAIPQ9BWF2 CABP5-201ENST00000293255 1257 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
TRAIPQ9BWF2 MRPL43-201ENST00000299179 747 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
TRAIPQ9BWF2 RPL21-203ENST00000319826 806 ntAPPRIS P1 TSL 2 BASIC18.05■□□□□ 0.48
TRAIPQ9BWF2 NUDT4P1-201ENST00000322209 1206 ntAPPRIS P1 BASIC18.05■□□□□ 0.48
TRAIPQ9BWF2 C6orf52-202ENST00000379586 430 ntAPPRIS ALT2 TSL 2 BASIC18.05■□□□□ 0.48
TRAIPQ9BWF2 TCF20-203ENST00000404876 1058 ntTSL 3 BASIC18.05■□□□□ 0.48
TRAIPQ9BWF2 PSMA8-203ENST00000415576 1280 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
TRAIPQ9BWF2 ZNF789-211ENST00000493485 556 ntTSL 4 BASIC18.05■□□□□ 0.48
TRAIPQ9BWF2 AC093214.1-201ENST00000511688 1107 ntBASIC18.05■□□□□ 0.48
TRAIPQ9BWF2 AC008750.1-201ENST00000532473 492 ntTSL 3 BASIC18.05■□□□□ 0.48
TRAIPQ9BWF2 NDUFA4L2-202ENST00000554503 1177 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
TRAIPQ9BWF2 Z97055.2-201ENST00000563715 859 ntTSL 3 BASIC18.05■□□□□ 0.48
TRAIPQ9BWF2 RARRES2P9-201ENST00000565168 469 ntBASIC18.05■□□□□ 0.48
TRAIPQ9BWF2 MIR6080-201ENST00000617359 66 ntBASIC18.05■□□□□ 0.48
TRAIPQ9BWF2 BACE1-201ENST00000313005 6326 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
TRAIPQ9BWF2 MAN1C1-201ENST00000263979 2627 ntTSL 5 BASIC18.05■□□□□ 0.48
TRAIPQ9BWF2 TSC22D1-AS1-201ENST00000616360 2845 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
TRAIPQ9BWF2 RAVER2-202ENST00000371072 4362 ntAPPRIS P2 TSL 1 (best) BASIC18.05■□□□□ 0.48
TRAIPQ9BWF2 INPP4A-204ENST00000409540 3231 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
TRAIPQ9BWF2 SPAG6-202ENST00000376603 2770 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
TRAIPQ9BWF2 PPP1R3B-202ENST00000519699 2334 ntAPPRIS P1 TSL 2 BASIC18.05■□□□□ 0.48
TRAIPQ9BWF2 KRT8P39-201ENST00000396270 1433 ntBASIC18.05■□□□□ 0.48
TRAIPQ9BWF2 ADGRB2-212ENST00000527361 4919 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
TRAIPQ9BWF2 RGN-203ENST00000397180 2257 ntAPPRIS P1 TSL 5 BASIC18.05■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 37.3 ms