Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 AC006063.2-201ENST00000640161 1696 ntTSL 5 BASIC18.89■□□□□ 0.61
USP28Q96RU2 ADRA1A-202ENST00000354550 1765 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
USP28Q96RU2 SATB2-206ENST00000457245 2656 ntAPPRIS P1 TSL 2 BASIC18.88■□□□□ 0.61
USP28Q96RU2 AC112504.1-201ENST00000623415 1841 ntBASIC18.88■□□□□ 0.61
USP28Q96RU2 BRD2-201ENST00000374825 4894 ntAPPRIS P3 TSL 1 (best) BASIC18.88■□□□□ 0.61
USP28Q96RU2 HSFX1-201ENST00000370416 1963 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
USP28Q96RU2 SFRP2-201ENST00000274063 2032 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
USP28Q96RU2 NDUFS2-202ENST00000392179 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC18.88■□□□□ 0.61
USP28Q96RU2 PAPOLB-201ENST00000404991 4262 ntAPPRIS P1 BASIC18.88■□□□□ 0.61
USP28Q96RU2 LCK-201ENST00000333070 2166 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
USP28Q96RU2 TCP10-201ENST00000366827 2250 ntAPPRIS ALT2 TSL 5 BASIC18.88■□□□□ 0.61
USP28Q96RU2 DENND1A-202ENST00000373620 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
USP28Q96RU2 PRSS8-206ENST00000568261 1214 ntTSL 2 BASIC18.88■□□□□ 0.61
USP28Q96RU2 AL773604.1-201ENST00000617417 272 ntBASIC18.88■□□□□ 0.61
USP28Q96RU2 FAM131A-207ENST00000450976 1335 ntTSL 3 BASIC18.88■□□□□ 0.61
USP28Q96RU2 KNOP1-205ENST00000568230 1311 ntAPPRIS ALT2 TSL 5 BASIC18.88■□□□□ 0.61
USP28Q96RU2 HFE2-204ENST00000475797 1381 ntTSL 2 BASIC18.88■□□□□ 0.61
USP28Q96RU2 CLIP4-201ENST00000320081 4293 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
USP28Q96RU2 MARCH1-203ENST00000503008 5877 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
USP28Q96RU2 ATP4B-201ENST00000335288 1488 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
USP28Q96RU2 IL3RA-202ENST00000381469 1476 ntTSL 5 BASIC18.88■□□□□ 0.61
USP28Q96RU2 PNCK-202ENST00000370142 1525 ntTSL 5 BASIC18.88■□□□□ 0.61
USP28Q96RU2 AL592424.1-201ENST00000563624 1536 ntBASIC18.88■□□□□ 0.61
USP28Q96RU2 PARVB-210ENST00000619710 1530 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
USP28Q96RU2 SH2B1-201ENST00000322610 3095 ntTSL 2 BASIC18.88■□□□□ 0.61
USP28Q96RU2 C1RL-210ENST00000544702 1569 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
USP28Q96RU2 PPP1CB-202ENST00000358506 4771 ntAPPRIS P1 TSL 5 BASIC18.88■□□□□ 0.61
USP28Q96RU2 ZNF561-AS1-204ENST00000587536 1799 ntTSL 2 BASIC18.88■□□□□ 0.61
USP28Q96RU2 DYNC1LI1-204ENST00000432458 1827 ntTSL 2 BASIC18.88■□□□□ 0.61
USP28Q96RU2 IQCF5-AS1-201ENST00000440723 2000 ntTSL 2 BASIC18.88■□□□□ 0.61
USP28Q96RU2 LINC02447-202ENST00000501888 2146 ntBASIC18.88■□□□□ 0.61
USP28Q96RU2 AEBP1-206ENST00000450684 2571 ntTSL 2 BASIC18.88■□□□□ 0.61
USP28Q96RU2 TRMT2A-202ENST00000403707 2928 ntAPPRIS P3 TSL 1 (best) BASIC18.87■□□□□ 0.61
USP28Q96RU2 ARHGAP5-205ENST00000433497 3047 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
USP28Q96RU2 LMNB2-201ENST00000325327 4671 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
USP28Q96RU2 ASXL1-202ENST00000375687 7031 ntAPPRIS P2 TSL 5 BASIC18.87■□□□□ 0.61
USP28Q96RU2 CHMP5-201ENST00000223500 1477 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
USP28Q96RU2 PLGRKT-201ENST00000223864 932 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
USP28Q96RU2 RBFA-202ENST00000306735 1407 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
USP28Q96RU2 GPR89B-201ENST00000314163 1934 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
USP28Q96RU2 SHOX-201ENST00000334060 1951 ntTSL 5 BASIC18.87■□□□□ 0.61
USP28Q96RU2 NR4A3-202ENST00000338488 2588 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
USP28Q96RU2 UCKL1-201ENST00000354216 1837 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
USP28Q96RU2 HIST1H3D-201ENST00000356476 411 ntAPPRIS P1 BASIC18.87■□□□□ 0.61
USP28Q96RU2 IPMK-201ENST00000373935 6133 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
USP28Q96RU2 AXIN2-202ENST00000375702 2541 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
USP28Q96RU2 CTNNBIP1-203ENST00000377263 3000 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
USP28Q96RU2 ZNF789-202ENST00000379724 510 ntTSL 2 BASIC18.87■□□□□ 0.61
USP28Q96RU2 MRPL3P1-201ENST00000400109 1033 ntBASIC18.87■□□□□ 0.61
USP28Q96RU2 MCFD2-205ENST00000409218 648 ntAPPRIS P1 TSL 2 BASIC18.87■□□□□ 0.61
USP28Q96RU2 PRR30-202ENST00000432962 1440 ntAPPRIS ALT2 TSL 3 BASIC18.87■□□□□ 0.61
USP28Q96RU2 HLA-DQB2-231ENST00000435145 2026 ntBASIC18.87■□□□□ 0.61
USP28Q96RU2 AC009947.1-201ENST00000444350 727 ntBASIC18.87■□□□□ 0.61
USP28Q96RU2 PRRT4-201ENST00000446477 3544 ntAPPRIS P1 TSL 5 BASIC18.87■□□□□ 0.61
USP28Q96RU2 PRAP1-202ENST00000463201 587 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
USP28Q96RU2 DNM1-208ENST00000486160 3181 ntAPPRIS ALT1 TSL 1 (best) BASIC18.87■□□□□ 0.61
USP28Q96RU2 ARSK-202ENST00000504763 1088 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
USP28Q96RU2 AC106791.1-202ENST00000508281 1148 ntTSL 2 BASIC18.87■□□□□ 0.61
USP28Q96RU2 FCHSD1-204ENST00000519800 802 ntTSL 2 BASIC18.87■□□□□ 0.61
USP28Q96RU2 SYBU-231ENST00000533065 2645 ntAPPRIS ALT2 TSL 2 BASIC18.87■□□□□ 0.61
USP28Q96RU2 AL160237.2-201ENST00000556165 472 ntBASIC18.87■□□□□ 0.61
USP28Q96RU2 UBE2Q2P1-205ENST00000559871 534 ntTSL 5 BASIC18.87■□□□□ 0.61
USP28Q96RU2 JRK-203ENST00000571961 2687 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
USP28Q96RU2 AL031055.1-201ENST00000606362 631 ntBASIC18.87■□□□□ 0.61
USP28Q96RU2 AC097376.2-204ENST00000609359 627 ntTSL 2 BASIC18.87■□□□□ 0.61
USP28Q96RU2 PRKN-208ENST00000610470 531 ntTSL 2 BASIC18.87■□□□□ 0.61
USP28Q96RU2 PRKN-209ENST00000612485 225 ntTSL 5 BASIC18.87■□□□□ 0.61
USP28Q96RU2 GTPBP8-208ENST00000619116 1378 ntTSL 5 BASIC18.87■□□□□ 0.61
USP28Q96RU2 AC116407.3-201ENST00000623905 1129 ntBASIC18.87■□□□□ 0.61
USP28Q96RU2 MEGF9-201ENST00000373930 6298 ntAPPRIS P1 TSL 2 BASIC18.87■□□□□ 0.61
USP28Q96RU2 GRAMD2B-217ENST00000515200 3109 ntTSL 5 BASIC18.87■□□□□ 0.61
USP28Q96RU2 COL4A3BP-203ENST00000380494 5651 ntTSL 2 BASIC18.87■□□□□ 0.61
USP28Q96RU2 AC007495.1-201ENST00000501259 2678 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
USP28Q96RU2 ZFP90-203ENST00000563169 2512 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
USP28Q96RU2 SCNN1A-221ENST00000543768 2361 ntAPPRIS ALT2 TSL 2 BASIC18.86■□□□□ 0.61
USP28Q96RU2 GUCD1-203ENST00000404664 1606 ntTSL 2 BASIC18.86■□□□□ 0.61
USP28Q96RU2 NRXN1-229ENST00000628515 3243 ntTSL 5 BASIC18.86■□□□□ 0.61
USP28Q96RU2 REEP4-202ENST00000334530 1476 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
USP28Q96RU2 ATP6V1E1-201ENST00000253413 1402 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
USP28Q96RU2 TUBB8-201ENST00000561967 1413 ntTSL 5 BASIC18.86■□□□□ 0.61
USP28Q96RU2 CHRNG-201ENST00000389492 1398 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
USP28Q96RU2 UBAC2-203ENST00000403766 1375 ntAPPRIS P1 TSL 2 BASIC18.86■□□□□ 0.61
USP28Q96RU2 ZNF764-201ENST00000252797 2738 ntAPPRIS P3 TSL 1 (best) BASIC18.86■□□□□ 0.61
USP28Q96RU2 AC004870.1-201ENST00000315132 882 ntBASIC18.86■□□□□ 0.61
USP28Q96RU2 DRAP1-202ENST00000376991 819 ntTSL 5 BASIC18.86■□□□□ 0.61
USP28Q96RU2 CD99-202ENST00000381180 530 ntTSL 2 BASIC18.86■□□□□ 0.61
USP28Q96RU2 SDR39U1-201ENST00000399395 1233 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
USP28Q96RU2 MCFD2-203ENST00000409147 671 ntTSL 2 BASIC18.86■□□□□ 0.61
USP28Q96RU2 ICAM2-202ENST00000418105 1252 ntAPPRIS P1 TSL 3 BASIC18.86■□□□□ 0.61
USP28Q96RU2 RNF212-203ENST00000433731 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
USP28Q96RU2 SUMO2P17-202ENST00000508743 738 ntTSL 3 BASIC18.86■□□□□ 0.61
USP28Q96RU2 UNC93B6-202ENST00000528242 690 ntBASIC18.86■□□□□ 0.61
USP28Q96RU2 CYB561D1-208ENST00000528785 1271 ntAPPRIS ALT1 TSL 5 BASIC18.86■□□□□ 0.61
USP28Q96RU2 IL18BP-211ENST00000531053 853 ntAPPRIS ALT2 TSL 2 BASIC18.86■□□□□ 0.61
USP28Q96RU2 ICAM2-208ENST00000579788 1103 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
USP28Q96RU2 LOXL3-203ENST00000409249 2431 ntTSL 5 BASIC18.86■□□□□ 0.61
USP28Q96RU2 SLC29A1-209ENST00000427851 2171 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
USP28Q96RU2 ATG13-216ENST00000530500 2030 ntTSL 2 BASIC18.86■□□□□ 0.61
USP28Q96RU2 PRSS50-201ENST00000460241 2960 ntAPPRIS P1 TSL 2 BASIC18.86■□□□□ 0.61
USP28Q96RU2 DRG2-201ENST00000225729 1964 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 30.3 ms