Protein–RNA interactions for Protein: Q92541

RTF1, RNA polymerase-associated protein RTF1 homolog, humanhuman

Known RBP Predictions only

Length 710 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1Q92541 HEPN1-201ENST00000408930 1434 ntAPPRIS P1 BASIC21.46■■□□□ 1.03
RTF1Q92541 C1orf115-201ENST00000294889 3413 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
RTF1Q92541 JADE3-204ENST00000614628 4934 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
RTF1Q92541 GPAT3-202ENST00000395226 2631 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
RTF1Q92541 DNM2-201ENST00000355667 3541 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
RTF1Q92541 NPY4R-202ENST00000612632 1800 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
RTF1Q92541 NPY4R2-202ENST00000613306 1800 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
RTF1Q92541 AL589702.1-201ENST00000641229 1509 ntBASIC21.46■■□□□ 1.03
RTF1Q92541 RRM2B-201ENST00000251810 4931 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
RTF1Q92541 IFFO1-211ENST00000615885 2775 ntTSL 5 BASIC21.46■■□□□ 1.03
RTF1Q92541 MOAP1-202ENST00000556883 2529 ntAPPRIS P1 TSL 2 BASIC21.46■■□□□ 1.03
RTF1Q92541 LCE1A-201ENST00000335123 422 ntAPPRIS P1 BASIC21.46■■□□□ 1.03
RTF1Q92541 MRNIP-202ENST00000376931 1004 ntAPPRIS ALT2 TSL 2 BASIC21.46■■□□□ 1.03
RTF1Q92541 SNHG17-203ENST00000417578 880 ntTSL 2 BASIC21.46■■□□□ 1.03
RTF1Q92541 AC092580.3-201ENST00000430932 139 ntBASIC21.46■■□□□ 1.03
RTF1Q92541 MUSTN1-201ENST00000446157 721 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
RTF1Q92541 TMEM120B-206ENST00000540377 962 ntTSL 3 BASIC21.46■■□□□ 1.03
RTF1Q92541 AC073592.8-201ENST00000624126 511 ntBASIC21.46■■□□□ 1.03
RTF1Q92541 AL035456.1-201ENST00000456064 1369 ntBASIC21.46■■□□□ 1.03
RTF1Q92541 ARHGAP11A-201ENST00000361627 5898 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
RTF1Q92541 ZNF385A-203ENST00000394313 2430 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
RTF1Q92541 RUNX2-204ENST00000371438 5698 ntAPPRIS P4 TSL 5 BASIC21.46■■□□□ 1.03
RTF1Q92541 TMEM51-202ENST00000376014 1843 ntAPPRIS P1 TSL 2 BASIC21.45■■□□□ 1.03
RTF1Q92541 PDLIM1-201ENST00000329399 1452 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.03
RTF1Q92541 CLN3-229ENST00000567963 1452 ntTSL 5 BASIC21.45■■□□□ 1.03
RTF1Q92541 GSKIP-205ENST00000555181 2218 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.03
RTF1Q92541 KLHDC7B-201ENST00000395676 2991 ntAPPRIS P1 BASIC21.45■■□□□ 1.03
RTF1Q92541 MGAT1-203ENST00000393340 3077 ntAPPRIS P1 TSL 2 BASIC21.45■■□□□ 1.02
RTF1Q92541 SUFU-202ENST00000369902 5001 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
RTF1Q92541 ZGLP1-202ENST00000403903 2303 ntAPPRIS P2 TSL 1 (best) BASIC21.45■■□□□ 1.02
RTF1Q92541 TTC13-202ENST00000366662 3112 ntAPPRIS ALT2 TSL 1 (best) BASIC21.45■■□□□ 1.02
RTF1Q92541 HNF1A-212ENST00000544413 2014 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
RTF1Q92541 PKM-216ENST00000565184 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC21.45■■□□□ 1.02
RTF1Q92541 AL365255.1-202ENST00000413887 363 ntTSL 5 BASIC21.45■■□□□ 1.02
RTF1Q92541 HNRNPA1P40-201ENST00000426371 1278 ntBASIC21.45■■□□□ 1.02
RTF1Q92541 AL512638.1-201ENST00000457493 794 ntBASIC21.45■■□□□ 1.02
RTF1Q92541 AC027369.6-201ENST00000525520 931 ntBASIC21.45■■□□□ 1.02
RTF1Q92541 AC022167.4-201ENST00000570290 498 ntTSL 3 BASIC21.45■■□□□ 1.02
RTF1Q92541 NAA60-208ENST00000570819 833 ntTSL 2 BASIC21.45■■□□□ 1.02
RTF1Q92541 HEXIM2-206ENST00000591576 1176 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
RTF1Q92541 LAMTOR5-208ENST00000614544 846 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
RTF1Q92541 RCAN3-211ENST00000630217 658 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
RTF1Q92541 LBX1-AS1-201ENST00000430651 2553 ntTSL 2 BASIC21.45■■□□□ 1.02
RTF1Q92541 ABCB9-207ENST00000442833 2587 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
RTF1Q92541 GLYCTK-207ENST00000477382 1304 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
RTF1Q92541 CYP2S1-201ENST00000310054 2782 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
RTF1Q92541 TCF7-204ENST00000395029 3330 ntAPPRIS ALT2 TSL 5 BASIC21.45■■□□□ 1.02
RTF1Q92541 ZNF853-201ENST00000457543 3857 ntAPPRIS P1 TSL 3 BASIC21.45■■□□□ 1.02
RTF1Q92541 NOMO2-211ENST00000621364 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC21.45■■□□□ 1.02
RTF1Q92541 PIGT-207ENST00000543458 2037 ntTSL 2 BASIC21.45■■□□□ 1.02
RTF1Q92541 ACTR3-208ENST00000535589 1530 ntTSL 2 BASIC21.45■■□□□ 1.02
RTF1Q92541 UBALD1-205ENST00000590891 2641 ntBASIC21.44■■□□□ 1.02
RTF1Q92541 GGT3P-204ENST00000453783 1664 ntBASIC21.44■■□□□ 1.02
RTF1Q92541 LINC01144-201ENST00000626198 1710 ntBASIC21.44■■□□□ 1.02
RTF1Q92541 AL355987.1-201ENST00000435202 2420 ntAPPRIS P1 TSL 2 BASIC21.44■■□□□ 1.02
RTF1Q92541 PLEKHA8P1-201ENST00000256692 1839 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
RTF1Q92541 POLR3E-202ENST00000359210 2469 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
RTF1Q92541 NUDT4P1-201ENST00000322209 1206 ntAPPRIS P1 BASIC21.44■■□□□ 1.02
RTF1Q92541 HFE-208ENST00000397022 1280 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
RTF1Q92541 TMEM176B-205ENST00000450753 1006 ntTSL 2 BASIC21.44■■□□□ 1.02
RTF1Q92541 HFE-214ENST00000488199 781 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
RTF1Q92541 MIR4745-201ENST00000577608 62 ntBASIC21.44■■□□□ 1.02
RTF1Q92541 AC024267.1-201ENST00000582320 895 ntBASIC21.44■■□□□ 1.02
RTF1Q92541 AC016168.1-201ENST00000591422 722 ntTSL 3 BASIC21.44■■□□□ 1.02
RTF1Q92541 ISM1-201ENST00000262487 2593 ntAPPRIS P1 TSL 5 BASIC21.44■■□□□ 1.02
RTF1Q92541 MTMR1-208ENST00000445323 4516 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
RTF1Q92541 EDN3-202ENST00000337938 2636 ntAPPRIS P4 TSL 1 (best) BASIC21.44■■□□□ 1.02
RTF1Q92541 NSFL1C-202ENST00000353088 2611 ntTSL 2 BASIC21.44■■□□□ 1.02
RTF1Q92541 ATXN2-219ENST00000550104 4648 ntAPPRIS P3 TSL 1 (best) BASIC21.44■■□□□ 1.02
RTF1Q92541 RAB22A-201ENST00000244040 8670 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
RTF1Q92541 KCNQ2-202ENST00000344462 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC21.44■■□□□ 1.02
RTF1Q92541 CCDC120-204ENST00000597275 2752 ntAPPRIS P3 TSL 2 BASIC21.44■■□□□ 1.02
RTF1Q92541 SYT6-205ENST00000609117 4424 ntTSL 5 BASIC21.44■■□□□ 1.02
RTF1Q92541 NEK3-206ENST00000611833 2345 ntAPPRIS ALT2 TSL 5 BASIC21.44■■□□□ 1.02
RTF1Q92541 CSRNP1-201ENST00000273153 3148 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
RTF1Q92541 DCAF17-211ENST00000539783 5623 ntAPPRIS ALT2 TSL 5 BASIC21.44■■□□□ 1.02
RTF1Q92541 FBXW9-201ENST00000393261 1738 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
RTF1Q92541 LIMS2-217ENST00000545738 1730 ntTSL 5 BASIC21.43■■□□□ 1.02
RTF1Q92541 SLC8A3-203ENST00000357887 5259 ntTSL 5 BASIC21.43■■□□□ 1.02
RTF1Q92541 SLC8A3-204ENST00000381269 5268 ntAPPRIS ALT1 TSL 1 (best) BASIC21.43■■□□□ 1.02
RTF1Q92541 LPAR5-202ENST00000431922 2695 ntAPPRIS P1 TSL 2 BASIC21.43■■□□□ 1.02
RTF1Q92541 TNIP1-208ENST00000520931 2680 ntAPPRIS ALT2 TSL 1 (best) BASIC21.43■■□□□ 1.02
RTF1Q92541 SERPINH1-201ENST00000358171 2225 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
RTF1Q92541 LRRC14-205ENST00000529022 2243 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
RTF1Q92541 NFATC2-206ENST00000609943 5690 ntAPPRIS ALT2 TSL 1 (best) BASIC21.43■■□□□ 1.02
RTF1Q92541 CLPP-201ENST00000245816 1155 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
RTF1Q92541 RBM43-202ENST00000409092 579 ntAPPRIS ALT2 TSL 2 BASIC21.43■■□□□ 1.02
RTF1Q92541 AL022316.1-201ENST00000428765 572 ntTSL 4 BASIC21.43■■□□□ 1.02
RTF1Q92541 AL109741.1-201ENST00000432195 403 ntTSL 2 BASIC21.43■■□□□ 1.02
RTF1Q92541 CD28-203ENST00000458610 705 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
RTF1Q92541 SATB1-217ENST00000493952 626 ntTSL 3 BASIC21.43■■□□□ 1.02
RTF1Q92541 FBXO4-206ENST00000509134 1284 ntTSL 5 BASIC21.43■■□□□ 1.02
RTF1Q92541 MTFR1L-218ENST00000526894 733 ntTSL 4 BASIC21.43■■□□□ 1.02
RTF1Q92541 TMSB15B-204ENST00000540220 665 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
RTF1Q92541 CSRP2-202ENST00000546966 754 ntAPPRIS P1 TSL 3 BASIC21.43■■□□□ 1.02
RTF1Q92541 TMSB15B-205ENST00000563257 590 ntTSL 4 BASIC21.43■■□□□ 1.02
RTF1Q92541 LMO7-AS1-202ENST00000568735 467 ntTSL 3 BASIC21.43■■□□□ 1.02
RTF1Q92541 LITAF-210ENST00000571976 548 ntTSL 2 BASIC21.43■■□□□ 1.02
RTF1Q92541 GABARAP-205ENST00000573928 476 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
RTF1Q92541 LITAF-214ENST00000574703 486 ntTSL 2 BASIC21.43■■□□□ 1.02
Retrieved 100 of 98,524 protein–RNA pairs in 33.6 ms