Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 AC007388.1-210ENST00000415640 458 ntTSL 3 BASIC16.02■□□□□ 0.16
LMX1AQ8TE12 SNRPB-202ENST00000438552 1008 ntAPPRIS P4 TSL 1 (best) BASIC16.02■□□□□ 0.16
LMX1AQ8TE12 NECAP2-203ENST00000457722 935 ntTSL 2 BASIC16.02■□□□□ 0.16
LMX1AQ8TE12 PPHLN1-221ENST00000552761 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.16
LMX1AQ8TE12 BANF1P1-201ENST00000553684 263 ntBASIC16.02■□□□□ 0.16
LMX1AQ8TE12 AC024267.1-201ENST00000582320 895 ntBASIC16.02■□□□□ 0.16
LMX1AQ8TE12 LINC01775-201ENST00000587826 371 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
LMX1AQ8TE12 RPS19-202ENST00000593863 526 ntAPPRIS P1 TSL 3 BASIC16.02■□□□□ 0.16
LMX1AQ8TE12 AC027307.3-201ENST00000594262 1100 ntBASIC16.02■□□□□ 0.16
LMX1AQ8TE12 CECR7-204ENST00000609932 568 ntTSL 2 BASIC16.02■□□□□ 0.16
LMX1AQ8TE12 LITAF-202ENST00000381810 1527 ntTSL 5 BASIC16.02■□□□□ 0.15
LMX1AQ8TE12 PGAP3-211ENST00000619169 2094 ntTSL 2 BASIC16.02■□□□□ 0.15
LMX1AQ8TE12 GPAA1P2-202ENST00000606848 1787 ntBASIC16.02■□□□□ 0.15
LMX1AQ8TE12 ACSL6-201ENST00000296869 2561 ntTSL 5 BASIC16.02■□□□□ 0.15
LMX1AQ8TE12 RAB4B-EGLN2-201ENST00000594136 2554 ntAPPRIS P1 TSL 2 BASIC16.02■□□□□ 0.15
LMX1AQ8TE12 SFRP2-201ENST00000274063 2032 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
LMX1AQ8TE12 LAT-202ENST00000360872 1459 ntAPPRIS P3 TSL 2 BASIC16.02■□□□□ 0.15
LMX1AQ8TE12 FBXO22-202ENST00000453211 1486 ntTSL 2 BASIC16.02■□□□□ 0.15
LMX1AQ8TE12 GTF2H4-201ENST00000259895 1735 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
LMX1AQ8TE12 QRFPR-202ENST00000394427 1708 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
LMX1AQ8TE12 CPVL-202ENST00000396276 1739 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
LMX1AQ8TE12 DPF2-205ENST00000528416 2799 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
LMX1AQ8TE12 ZNF385B-204ENST00000410066 3288 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
LMX1AQ8TE12 ZNF865-201ENST00000568956 4005 ntAPPRIS P1 TSL 2 BASIC16.02■□□□□ 0.15
LMX1AQ8TE12 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
LMX1AQ8TE12 EVC2-202ENST00000344408 4390 ntAPPRIS P3 TSL 1 (best) BASIC16.01■□□□□ 0.15
LMX1AQ8TE12 ASTN2-205ENST00000361209 4622 ntAPPRIS P2 TSL 1 (best) BASIC16.01■□□□□ 0.15
LMX1AQ8TE12 ZSCAN10-202ENST00000538082 2350 ntTSL 4 BASIC16.01■□□□□ 0.15
LMX1AQ8TE12 NBL1-213ENST00000622566 2109 ntAPPRIS P3 TSL 4 BASIC16.01■□□□□ 0.15
LMX1AQ8TE12 STK24-203ENST00000397517 4578 ntTSL 2 BASIC16.01■□□□□ 0.15
LMX1AQ8TE12 ZNF213-201ENST00000396878 3313 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
LMX1AQ8TE12 PHRF1-201ENST00000264555 5523 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
LMX1AQ8TE12 FFAR2-201ENST00000246549 2051 ntAPPRIS P1 BASIC16.01■□□□□ 0.15
LMX1AQ8TE12 AL031731.1-201ENST00000642131 2094 ntBASIC16.01■□□□□ 0.15
LMX1AQ8TE12 AARSD1-202ENST00000427569 1322 ntAPPRIS P1 TSL 5 BASIC16.01■□□□□ 0.15
LMX1AQ8TE12 TMED3-203ENST00000536821 2265 ntTSL 2 BASIC16.01■□□□□ 0.15
LMX1AQ8TE12 ZYG11A-202ENST00000371532 3942 ntTSL 5 BASIC16.01■□□□□ 0.15
LMX1AQ8TE12 SGK3-206ENST00000520976 2483 ntTSL 2 BASIC16.01■□□□□ 0.15
LMX1AQ8TE12 ODF2-204ENST00000372814 2249 ntTSL 2 BASIC16.01■□□□□ 0.15
LMX1AQ8TE12 CCDC84-201ENST00000334418 1202 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
LMX1AQ8TE12 C1QC-202ENST00000374639 1183 ntAPPRIS P1 TSL 2 BASIC16.01■□□□□ 0.15
LMX1AQ8TE12 CIB3-202ENST00000379859 467 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
LMX1AQ8TE12 GPR162-202ENST00000382315 1150 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
LMX1AQ8TE12 AL669831.5-201ENST00000434264 844 ntTSL 5 BASIC16.01■□□□□ 0.15
LMX1AQ8TE12 LINC01818-201ENST00000437118 368 ntTSL 2 BASIC16.01■□□□□ 0.15
LMX1AQ8TE12 SHBG-204ENST00000441599 973 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
LMX1AQ8TE12 PAX5-207ENST00000446742 885 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
LMX1AQ8TE12 REEP4-207ENST00000523293 913 ntTSL 3 BASIC16.01■□□□□ 0.15
LMX1AQ8TE12 AP005018.1-201ENST00000525475 301 ntBASIC16.01■□□□□ 0.15
LMX1AQ8TE12 MAPKAPK5-203ENST00000547305 494 ntTSL 2 BASIC16.01■□□□□ 0.15
LMX1AQ8TE12 FKBP11-208ENST00000550765 1030 ntAPPRIS P3 TSL 1 (best) BASIC16.01■□□□□ 0.15
LMX1AQ8TE12 TUBB3-203ENST00000553967 736 ntTSL 2 BASIC16.01■□□□□ 0.15
LMX1AQ8TE12 AL079307.3-201ENST00000556114 283 ntBASIC16.01■□□□□ 0.15
LMX1AQ8TE12 COQ9-214ENST00000567933 882 ntTSL 3 BASIC16.01■□□□□ 0.15
LMX1AQ8TE12 TPGS2-215ENST00000590842 1239 ntTSL 2 BASIC16.01■□□□□ 0.15
LMX1AQ8TE12 LCN8-205ENST00000612714 638 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
LMX1AQ8TE12 AC090164.4-201ENST00000632451 313 ntTSL 5 BASIC16.01■□□□□ 0.15
LMX1AQ8TE12 CXCL6-201ENST00000226317 1718 ntAPPRIS P2 TSL 1 (best) BASIC16.01■□□□□ 0.15
LMX1AQ8TE12 CARNS1-202ENST00000445895 3971 ntAPPRIS P1 TSL 5 BASIC16.01■□□□□ 0.15
LMX1AQ8TE12 NDUFV1-223ENST00000532303 1493 ntTSL 2 BASIC16.01■□□□□ 0.15
LMX1AQ8TE12 P2RY6-208ENST00000540124 2351 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
LMX1AQ8TE12 SMARCA4-215ENST00000590574 5282 ntAPPRIS ALT1 TSL 5 BASIC16.01■□□□□ 0.15
LMX1AQ8TE12 KCTD15-202ENST00000430256 2555 ntAPPRIS P1 TSL 2 BASIC16.01■□□□□ 0.15
LMX1AQ8TE12 GALNT17-201ENST00000333538 3884 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
LMX1AQ8TE12 FTSJ1-202ENST00000348411 1892 ntAPPRIS P4 TSL 1 (best) BASIC16.01■□□□□ 0.15
LMX1AQ8TE12 CFL1-203ENST00000525451 1878 ntAPPRIS P1 TSL 2 BASIC16.01■□□□□ 0.15
LMX1AQ8TE12 TMEM120A-201ENST00000417509 1444 ntTSL 2 BASIC16.01■□□□□ 0.15
LMX1AQ8TE12 CYB5R3-204ENST00000407332 1849 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
LMX1AQ8TE12 NSMCE3-201ENST00000332303 4838 ntAPPRIS P1 BASIC16.01■□□□□ 0.15
LMX1AQ8TE12 NOMO1-208ENST00000620755 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC16■□□□□ 0.15
LMX1AQ8TE12 GFY-202ENST00000610896 1557 ntAPPRIS P1 TSL 2 BASIC16■□□□□ 0.15
LMX1AQ8TE12 SLC30A4-201ENST00000261867 7157 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
LMX1AQ8TE12 COL4A3BP-203ENST00000380494 5651 ntTSL 2 BASIC16■□□□□ 0.15
LMX1AQ8TE12 EVX2-201ENST00000308618 4203 ntAPPRIS P1 TSL 5 BASIC16■□□□□ 0.15
LMX1AQ8TE12 GPR149-201ENST00000389740 2323 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
LMX1AQ8TE12 AR-209ENST00000613054 3532 ntTSL 1 (best) BASIC16■□□□□ 0.15
LMX1AQ8TE12 MAP6-202ENST00000434603 4329 ntAPPRIS ALT2 TSL 1 (best) BASIC16■□□□□ 0.15
LMX1AQ8TE12 RECK-201ENST00000377966 4888 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
LMX1AQ8TE12 RGS20-201ENST00000276500 1664 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
LMX1AQ8TE12 CASK-203ENST00000378163 4411 ntAPPRIS ALT1 TSL 5 BASIC16■□□□□ 0.15
LMX1AQ8TE12 C2orf40-201ENST00000238044 789 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
LMX1AQ8TE12 MRPL53-201ENST00000258105 1162 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
LMX1AQ8TE12 ASB12-201ENST00000362002 1289 ntAPPRIS P1 TSL 2 BASIC16■□□□□ 0.15
LMX1AQ8TE12 ZUFSP-201ENST00000368573 1225 ntTSL 5 BASIC16■□□□□ 0.15
LMX1AQ8TE12 LINC00659-201ENST00000412500 540 ntTSL 1 (best) BASIC16■□□□□ 0.15
LMX1AQ8TE12 AC244107.1-201ENST00000442033 332 ntBASIC16■□□□□ 0.15
LMX1AQ8TE12 AC009477.1-201ENST00000452936 217 ntBASIC16■□□□□ 0.15
LMX1AQ8TE12 TMPRSS11CP-201ENST00000453277 683 ntBASIC16■□□□□ 0.15
LMX1AQ8TE12 TMEM176A-202ENST00000461345 635 ntAPPRIS ALT2 TSL 5 BASIC16■□□□□ 0.15
LMX1AQ8TE12 CXCL6-203ENST00000515050 557 ntAPPRIS ALT1 TSL 1 (best) BASIC16■□□□□ 0.15
LMX1AQ8TE12 AC138466.1-201ENST00000535242 391 ntTSL 3 BASIC16■□□□□ 0.15
LMX1AQ8TE12 OBP2A-206ENST00000539850 914 ntAPPRIS P1 TSL 5 BASIC16■□□□□ 0.15
LMX1AQ8TE12 AURKB-214ENST00000585124 1227 ntAPPRIS P3 TSL 1 (best) BASIC16■□□□□ 0.15
LMX1AQ8TE12 AC012615.6-204ENST00000587741 477 ntTSL 3 BASIC16■□□□□ 0.15
LMX1AQ8TE12 ALKBH7-203ENST00000599849 556 ntTSL 3 BASIC16■□□□□ 0.15
LMX1AQ8TE12 AL133215.2-201ENST00000609242 977 ntBASIC16■□□□□ 0.15
LMX1AQ8TE12 SKOR1-203ENST00000554054 3620 ntAPPRIS ALT2 TSL 5 BASIC16■□□□□ 0.15
LMX1AQ8TE12 SNX9-201ENST00000392185 4198 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
LMX1AQ8TE12 PEG3-206ENST00000598410 5304 ntTSL 1 (best) BASIC16■□□□□ 0.15
LMX1AQ8TE12 NSMF-204ENST00000371473 3556 ntTSL 1 (best) BASIC16■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 33.5 ms