Protein–RNA interactions for Protein: Q8NEL0

CCDC54, Coiled-coil domain-containing protein 54, humanhuman

Predictions only

Length 328 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54Q8NEL0 ZNF425-201ENST00000378061 3220 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
CCDC54Q8NEL0 CTNND2-214ENST00000511377 4336 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
CCDC54Q8NEL0 PDE4C-201ENST00000262805 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC14.47□□□□□ -0.09
CCDC54Q8NEL0 MAGEA2B-201ENST00000331220 1946 ntAPPRIS P1 TSL 2 BASIC14.47□□□□□ -0.09
CCDC54Q8NEL0 AC004943.2-201ENST00000563328 4842 ntTSL 3 BASIC14.47□□□□□ -0.09
CCDC54Q8NEL0 CHAT-203ENST00000351556 2286 ntAPPRIS ALT2 TSL 5 BASIC14.46□□□□□ -0.09
CCDC54Q8NEL0 AL512652.2-201ENST00000625156 1716 ntBASIC14.46□□□□□ -0.09
CCDC54Q8NEL0 AC104836.1-202ENST00000636805 6041 ntAPPRIS P1 TSL 5 BASIC14.46□□□□□ -0.09
CCDC54Q8NEL0 MMRN2-201ENST00000372027 4375 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
CCDC54Q8NEL0 CYP2R1-201ENST00000334636 2235 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
CCDC54Q8NEL0 TBX5-203ENST00000405440 2203 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
CCDC54Q8NEL0 SGO1-203ENST00000412997 2587 ntAPPRIS P4 TSL 1 (best) BASIC14.46□□□□□ -0.09
CCDC54Q8NEL0 KDM2B-201ENST00000377069 5224 ntAPPRIS ALT2 TSL 2 BASIC14.46□□□□□ -0.09
CCDC54Q8NEL0 TMEM216-201ENST00000334888 1306 ntAPPRIS ALT2 TSL 2 BASIC14.46□□□□□ -0.09
CCDC54Q8NEL0 FGFR3-204ENST00000412135 3951 ntTSL 5 BASIC14.46□□□□□ -0.09
CCDC54Q8NEL0 STK32C-204ENST00000368622 2010 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
CCDC54Q8NEL0 DARS-201ENST00000264161 2361 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
CCDC54Q8NEL0 AIFM3-202ENST00000399167 2387 ntAPPRIS P3 TSL 2 BASIC14.46□□□□□ -0.09
CCDC54Q8NEL0 AIFM3-207ENST00000440238 2368 ntAPPRIS P3 TSL 1 (best) BASIC14.46□□□□□ -0.09
CCDC54Q8NEL0 SPON1-201ENST00000576479 4837 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
CCDC54Q8NEL0 LRP8-201ENST00000306052 7648 ntAPPRIS P3 TSL 1 (best) BASIC14.46□□□□□ -0.09
CCDC54Q8NEL0 APOPT1-201ENST00000409074 2523 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
CCDC54Q8NEL0 AL139300.1-201ENST00000472726 2505 ntAPPRIS P1 TSL 2 BASIC14.46□□□□□ -0.09
CCDC54Q8NEL0 PDXDC1-204ENST00000455313 2183 ntTSL 2 BASIC14.46□□□□□ -0.09
CCDC54Q8NEL0 TMC3-AS1-203ENST00000559781 2195 ntTSL 3 BASIC14.46□□□□□ -0.09
CCDC54Q8NEL0 SDR16C5-201ENST00000303749 1840 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
CCDC54Q8NEL0 ADAM6-201ENST00000606026 1843 ntTSL 2 BASIC14.46□□□□□ -0.09
CCDC54Q8NEL0 VIPR2-202ENST00000377633 1491 ntTSL 2 BASIC14.46□□□□□ -0.09
CCDC54Q8NEL0 CD81-AS1-201ENST00000413483 1460 ntTSL 2 BASIC14.46□□□□□ -0.09
CCDC54Q8NEL0 PC-214ENST00000628663 1470 ntTSL 5 BASIC14.46□□□□□ -0.09
CCDC54Q8NEL0 ZFP28-201ENST00000301318 4096 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
CCDC54Q8NEL0 C7orf31-201ENST00000283905 2673 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
CCDC54Q8NEL0 PHF1-202ENST00000374516 2330 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
CCDC54Q8NEL0 NRP1-203ENST00000374821 1988 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
CCDC54Q8NEL0 EIF2B4-206ENST00000451130 1633 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
CCDC54Q8NEL0 WWTR1-204ENST00000467467 1603 ntAPPRIS P1 TSL 5 BASIC14.46□□□□□ -0.09
CCDC54Q8NEL0 ZNHIT1-201ENST00000305105 1225 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
CCDC54Q8NEL0 TMEM44-201ENST00000330115 1278 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
CCDC54Q8NEL0 LYPLA2-204ENST00000374505 907 ntTSL 3 BASIC14.46□□□□□ -0.09
CCDC54Q8NEL0 BX276092.7-202ENST00000422194 696 ntTSL 3 BASIC14.46□□□□□ -0.09
CCDC54Q8NEL0 UPK3BP1-201ENST00000428678 509 ntBASIC14.46□□□□□ -0.09
CCDC54Q8NEL0 MRPL28-203ENST00000429738 310 ntTSL 2 BASIC14.46□□□□□ -0.09
CCDC54Q8NEL0 HCG4P8-203ENST00000443049 980 ntBASIC14.46□□□□□ -0.09
CCDC54Q8NEL0 AL611929.1-201ENST00000457340 449 ntTSL 3 BASIC14.46□□□□□ -0.09
CCDC54Q8NEL0 AC105202.1-201ENST00000517833 995 ntTSL 3 BASIC14.46□□□□□ -0.09
CCDC54Q8NEL0 AP001107.6-201ENST00000526655 516 ntTSL 3 BASIC14.46□□□□□ -0.09
CCDC54Q8NEL0 CYP2A7P1-201ENST00000595391 815 ntBASIC14.46□□□□□ -0.09
CCDC54Q8NEL0 AL117335.1-203ENST00000619200 948 ntTSL 5 BASIC14.46□□□□□ -0.09
CCDC54Q8NEL0 PGM5P2-202ENST00000637225 1043 ntBASIC14.46□□□□□ -0.09
CCDC54Q8NEL0 RTN1-209ENST00000611068 2647 ntTSL 5 BASIC14.46□□□□□ -0.09
CCDC54Q8NEL0 KRAS-202ENST00000311936 5765 ntAPPRIS ALT1 TSL 1 (best) BASIC14.46□□□□□ -0.09
CCDC54Q8NEL0 ALOX12P2-203ENST00000570921 1945 ntBASIC14.46□□□□□ -0.09
CCDC54Q8NEL0 F7-201ENST00000346342 2409 ntAPPRIS ALT2 TSL 1 (best) BASIC14.46□□□□□ -0.09
CCDC54Q8NEL0 ADARB1-204ENST00000389863 3563 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
CCDC54Q8NEL0 ELN-221ENST00000445912 2583 ntAPPRIS ALT2 TSL 2 BASIC14.46□□□□□ -0.09
CCDC54Q8NEL0 POU5F1B-201ENST00000465342 5360 ntAPPRIS P1 TSL 3 BASIC14.46□□□□□ -0.09
CCDC54Q8NEL0 TCF25-202ENST00000263347 2377 ntTSL 5 BASIC14.46□□□□□ -0.1
CCDC54Q8NEL0 PPP1R21-206ENST00000449090 3049 ntTSL 1 (best) BASIC14.46□□□□□ -0.1
CCDC54Q8NEL0 CERK-201ENST00000216264 4450 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
CCDC54Q8NEL0 BICD2-202ENST00000375512 4636 ntAPPRIS P3 TSL 1 (best) BASIC14.46□□□□□ -0.1
CCDC54Q8NEL0 GOLGA2P2Y-202ENST00000423852 1506 ntBASIC14.46□□□□□ -0.1
CCDC54Q8NEL0 PPP1R21-202ENST00000294952 3142 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
CCDC54Q8NEL0 WT1-203ENST00000379079 2466 ntTSL 1 (best) BASIC14.46□□□□□ -0.1
CCDC54Q8NEL0 PACS1-209ENST00000529757 1688 ntAPPRIS ALT2 TSL 1 (best) BASIC14.46□□□□□ -0.1
CCDC54Q8NEL0 EDN3-202ENST00000337938 2636 ntAPPRIS P4 TSL 1 (best) BASIC14.45□□□□□ -0.1
CCDC54Q8NEL0 TMED5-202ENST00000370282 6104 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
CCDC54Q8NEL0 FXN-201ENST00000377270 2608 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
CCDC54Q8NEL0 AC027601.1-201ENST00000575922 4506 ntTSL 2 BASIC14.45□□□□□ -0.1
CCDC54Q8NEL0 PIAS3-201ENST00000369298 2761 ntTSL 5 BASIC14.45□□□□□ -0.1
CCDC54Q8NEL0 DDOST-202ENST00000415136 2126 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
CCDC54Q8NEL0 WASF1-207ENST00000392589 3220 ntAPPRIS P1 TSL 5 BASIC14.45□□□□□ -0.1
CCDC54Q8NEL0 KIF26B-202ENST00000407071 7287 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
CCDC54Q8NEL0 LINC02415-201ENST00000508505 1315 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
CCDC54Q8NEL0 BICD1-205ENST00000550207 1328 ntTSL 3 BASIC14.45□□□□□ -0.1
CCDC54Q8NEL0 AL161772.1-201ENST00000610494 4412 ntBASIC14.45□□□□□ -0.1
CCDC54Q8NEL0 AC100830.1-201ENST00000560387 1609 ntTSL 2 BASIC14.45□□□□□ -0.1
CCDC54Q8NEL0 P2RY1-201ENST00000305097 6747 ntAPPRIS P1 BASIC14.45□□□□□ -0.1
CCDC54Q8NEL0 DUOXA2-201ENST00000323030 1760 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
CCDC54Q8NEL0 PANK2-209ENST00000621507 1763 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
CCDC54Q8NEL0 SHISA5-209ENST00000443308 1933 ntTSL 2 BASIC14.45□□□□□ -0.1
CCDC54Q8NEL0 ZSCAN2-214ENST00000546148 2242 ntAPPRIS P2 TSL 2 BASIC14.45□□□□□ -0.1
CCDC54Q8NEL0 PANK4-201ENST00000378466 2677 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
CCDC54Q8NEL0 KLHL33-203ENST00000637228 5404 ntTSL 5 BASIC14.45□□□□□ -0.1
CCDC54Q8NEL0 SNHG15-202ENST00000577700 3116 ntTSL 2 BASIC14.45□□□□□ -0.1
CCDC54Q8NEL0 KIF1C-201ENST00000320785 7919 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
CCDC54Q8NEL0 PRSS27-201ENST00000302641 1130 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
CCDC54Q8NEL0 NEURL2-201ENST00000372518 1278 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
CCDC54Q8NEL0 AC109309.1-201ENST00000418995 435 ntTSL 3 BASIC14.45□□□□□ -0.1
CCDC54Q8NEL0 TSTD1-204ENST00000423014 593 ntAPPRIS ALT2 TSL 2 BASIC14.45□□□□□ -0.1
CCDC54Q8NEL0 LINC00894-202ENST00000425602 1597 ntTSL 2 BASIC14.45□□□□□ -0.1
CCDC54Q8NEL0 SFTPC-204ENST00000520605 519 ntTSL 3 BASIC14.45□□□□□ -0.1
CCDC54Q8NEL0 SFTPC-210ENST00000524255 681 ntTSL 2 BASIC14.45□□□□□ -0.1
CCDC54Q8NEL0 KBTBD4-203ENST00000525720 980 ntTSL 3 BASIC14.45□□□□□ -0.1
CCDC54Q8NEL0 ZNF84-208ENST00000539354 3237 ntAPPRIS P2 TSL 1 (best) BASIC14.45□□□□□ -0.1
CCDC54Q8NEL0 CMKLR1-204ENST00000550402 1893 ntAPPRIS ALT2 TSL 1 (best) BASIC14.45□□□□□ -0.1
CCDC54Q8NEL0 SPINT1-202ENST00000562057 2456 ntAPPRIS ALT2 TSL 1 (best) BASIC14.45□□□□□ -0.1
CCDC54Q8NEL0 PRELID1P1-202ENST00000567272 903 ntBASIC14.45□□□□□ -0.1
CCDC54Q8NEL0 CHRNB1-207ENST00000575379 1095 ntTSL 2 BASIC14.45□□□□□ -0.1
CCDC54Q8NEL0 FAM220A-205ENST00000578372 207 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
CCDC54Q8NEL0 PRR29-207ENST00000580752 458 ntTSL 3 BASIC14.45□□□□□ -0.1
Retrieved 100 of 98,524 protein–RNA pairs in 29.2 ms