Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 AL353708.3-201ENST00000610272 989 ntBASIC13.87□□□□□ -0.19
CCDC28AQ8IWP9 TELO2-201ENST00000262319 3314 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
CCDC28AQ8IWP9 FAM49B-223ENST00000522746 2196 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
CCDC28AQ8IWP9 ZNF782-205ENST00000481138 4213 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
CCDC28AQ8IWP9 ST6GAL1-201ENST00000169298 4645 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
CCDC28AQ8IWP9 ITPRIPL2-201ENST00000381440 7247 ntAPPRIS P1 BASIC13.87□□□□□ -0.19
CCDC28AQ8IWP9 ACOT12-201ENST00000307624 2086 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
CCDC28AQ8IWP9 PTPRN-201ENST00000295718 3784 ntAPPRIS P3 TSL 1 (best) BASIC13.87□□□□□ -0.19
CCDC28AQ8IWP9 ABCB8-201ENST00000297504 2487 ntTSL 2 BASIC13.87□□□□□ -0.19
CCDC28AQ8IWP9 KLHDC7A-201ENST00000400664 5145 ntAPPRIS P1 BASIC13.87□□□□□ -0.19
CCDC28AQ8IWP9 TTC7A-203ENST00000409245 3033 ntTSL 2 BASIC13.87□□□□□ -0.19
CCDC28AQ8IWP9 LFNG-202ENST00000338732 1968 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
CCDC28AQ8IWP9 AC113189.2-201ENST00000575310 1975 ntTSL 2 BASIC13.87□□□□□ -0.19
CCDC28AQ8IWP9 TFE3-201ENST00000315869 3415 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
CCDC28AQ8IWP9 SLC39A1-203ENST00000368621 2398 ntAPPRIS P1 TSL 2 BASIC13.87□□□□□ -0.19
CCDC28AQ8IWP9 DDX20-201ENST00000369702 4212 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
CCDC28AQ8IWP9 TMPRSS3-203ENST00000398405 2754 ntAPPRIS ALT1 TSL 5 BASIC13.87□□□□□ -0.19
CCDC28AQ8IWP9 AL731571.1-201ENST00000617058 5428 ntBASIC13.87□□□□□ -0.19
CCDC28AQ8IWP9 FBXO28-202ENST00000424254 1334 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
CCDC28AQ8IWP9 SMN1-209ENST00000514951 1308 ntTSL 2 BASIC13.87□□□□□ -0.19
CCDC28AQ8IWP9 MEOX2-201ENST00000262041 2500 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
CCDC28AQ8IWP9 ADAM12-201ENST00000368676 3313 ntAPPRIS ALT2 TSL 1 (best) BASIC13.87□□□□□ -0.19
CCDC28AQ8IWP9 FLI1-205ENST00000527786 4127 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
CCDC28AQ8IWP9 AUTS2-218ENST00000615871 4511 ntTSL 5 BASIC13.87□□□□□ -0.19
CCDC28AQ8IWP9 SNX30-201ENST00000374232 7622 ntAPPRIS P1 TSL 5 BASIC13.87□□□□□ -0.19
CCDC28AQ8IWP9 ABCA2-201ENST00000265662 8154 ntAPPRIS ALT2 TSL 5 BASIC13.87□□□□□ -0.19
CCDC28AQ8IWP9 HAUS4-217ENST00000555367 1454 ntTSL 5 BASIC13.87□□□□□ -0.19
CCDC28AQ8IWP9 VPS13B-201ENST00000355155 2822 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
CCDC28AQ8IWP9 EFHC1-206ENST00000635760 2030 ntTSL 5 BASIC13.86□□□□□ -0.19
CCDC28AQ8IWP9 CCT3-201ENST00000295688 2150 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
CCDC28AQ8IWP9 SLC19A2-201ENST00000236137 3671 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
CCDC28AQ8IWP9 FERMT1-201ENST00000217289 5151 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
CCDC28AQ8IWP9 SPATA21-205ENST00000540400 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC13.86□□□□□ -0.19
CCDC28AQ8IWP9 TOM1-209ENST00000447733 2317 ntTSL 2 BASIC13.86□□□□□ -0.19
CCDC28AQ8IWP9 SYT7-209ENST00000542836 1362 ntTSL 5 BASIC13.86□□□□□ -0.19
CCDC28AQ8IWP9 DLX3-201ENST00000434704 2602 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
CCDC28AQ8IWP9 GREM1-202ENST00000560830 2648 ntTSL 2 BASIC13.86□□□□□ -0.19
CCDC28AQ8IWP9 ETFBKMT-202ENST00000395763 2055 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
CCDC28AQ8IWP9 ZMYND11-214ENST00000509513 2065 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
CCDC28AQ8IWP9 RIN3-201ENST00000216487 3859 ntAPPRIS P2 TSL 1 (best) BASIC13.86□□□□□ -0.19
CCDC28AQ8IWP9 KIF7-201ENST00000394412 4551 ntAPPRIS P1 TSL 5 BASIC13.86□□□□□ -0.19
CCDC28AQ8IWP9 PRMT7-202ENST00000441236 2204 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
CCDC28AQ8IWP9 IRAK4-212ENST00000551736 1684 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
CCDC28AQ8IWP9 HYAL3-207ENST00000621157 1696 ntAPPRIS P1 TSL 5 BASIC13.86□□□□□ -0.19
CCDC28AQ8IWP9 E2F7-201ENST00000322886 5740 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
CCDC28AQ8IWP9 ADD3-202ENST00000356080 3081 ntAPPRIS P4 TSL 1 (best) BASIC13.86□□□□□ -0.19
CCDC28AQ8IWP9 DNAJB6-201ENST00000262177 2527 ntAPPRIS P3 TSL 1 (best) BASIC13.86□□□□□ -0.19
CCDC28AQ8IWP9 KRAS-202ENST00000311936 5765 ntAPPRIS ALT1 TSL 1 (best) BASIC13.86□□□□□ -0.19
CCDC28AQ8IWP9 RHPN1-201ENST00000289013 3683 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
CCDC28AQ8IWP9 HAS3-201ENST00000219322 1163 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
CCDC28AQ8IWP9 CENPA-201ENST00000233505 1299 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
CCDC28AQ8IWP9 MRPL15-201ENST00000260102 1147 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
CCDC28AQ8IWP9 HLA-DRB1-201ENST00000360004 1229 ntAPPRIS P1 BASIC13.86□□□□□ -0.19
CCDC28AQ8IWP9 MIR149-201ENST00000384879 89 ntBASIC13.86□□□□□ -0.19
CCDC28AQ8IWP9 CDKN1B-202ENST00000396340 897 ntTSL 3 BASIC13.86□□□□□ -0.19
CCDC28AQ8IWP9 METTL5-206ENST00000409965 880 ntAPPRIS P2 TSL 1 (best) BASIC13.86□□□□□ -0.19
CCDC28AQ8IWP9 ADGRD1-AS1-202ENST00000542980 1277 ntTSL 4 BASIC13.86□□□□□ -0.19
CCDC28AQ8IWP9 TESC-AS1-201ENST00000547006 1053 ntTSL 2 BASIC13.86□□□□□ -0.19
CCDC28AQ8IWP9 AC142381.4-202ENST00000563973 229 ntBASIC13.86□□□□□ -0.19
CCDC28AQ8IWP9 AC011446.2-202ENST00000592882 756 ntTSL 3 BASIC13.86□□□□□ -0.19
CCDC28AQ8IWP9 AC010531.6-201ENST00000602282 401 ntTSL 2 BASIC13.86□□□□□ -0.19
CCDC28AQ8IWP9 AC073195.1-201ENST00000607241 877 ntBASIC13.86□□□□□ -0.19
CCDC28AQ8IWP9 AP001412.1-201ENST00000608405 714 ntBASIC13.86□□□□□ -0.19
CCDC28AQ8IWP9 BX649632.1-201ENST00000610187 819 ntTSL 3 BASIC13.86□□□□□ -0.19
CCDC28AQ8IWP9 AL031985.4-201ENST00000642138 673 ntBASIC13.86□□□□□ -0.19
CCDC28AQ8IWP9 KRT16P1-201ENST00000399124 1418 ntBASIC13.86□□□□□ -0.19
CCDC28AQ8IWP9 SMAP1-201ENST00000316999 2403 ntAPPRIS P3 TSL 1 (best) BASIC13.86□□□□□ -0.19
CCDC28AQ8IWP9 OR2C3-201ENST00000366487 8467 ntAPPRIS P1 BASIC13.86□□□□□ -0.19
CCDC28AQ8IWP9 CDH20-202ENST00000536675 2855 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
CCDC28AQ8IWP9 ELOA3-201ENST00000330682 1877 ntAPPRIS P1 BASIC13.86□□□□□ -0.19
CCDC28AQ8IWP9 SNX31-201ENST00000311812 2457 ntAPPRIS P1 TSL 2 BASIC13.86□□□□□ -0.19
CCDC28AQ8IWP9 GID4-201ENST00000268719 4237 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
CCDC28AQ8IWP9 ALDH1B1-201ENST00000377698 3066 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
CCDC28AQ8IWP9 ZNF747-202ENST00000395094 3504 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
CCDC28AQ8IWP9 GPS1-202ENST00000320548 1949 ntTSL 2 BASIC13.86□□□□□ -0.19
CCDC28AQ8IWP9 PRMT5-203ENST00000397440 1907 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
CCDC28AQ8IWP9 PAPD7-207ENST00000631941 1902 ntAPPRIS P1 TSL 5 BASIC13.86□□□□□ -0.19
CCDC28AQ8IWP9 DTX3-204ENST00000548804 2067 ntAPPRIS P3 TSL 5 BASIC13.86□□□□□ -0.19
CCDC28AQ8IWP9 POR-201ENST00000394893 2532 ntTSL 5 BASIC13.86□□□□□ -0.19
CCDC28AQ8IWP9 AC099343.3-201ENST00000605834 2503 ntBASIC13.86□□□□□ -0.19
CCDC28AQ8IWP9 KLF11-201ENST00000305883 4030 ntAPPRIS P3 TSL 1 (best) BASIC13.86□□□□□ -0.19
CCDC28AQ8IWP9 UMODL1-203ENST00000400424 5516 ntAPPRIS ALT2 TSL 1 (best) BASIC13.86□□□□□ -0.19
CCDC28AQ8IWP9 PURA-201ENST00000331327 11497 ntAPPRIS P1 BASIC13.85□□□□□ -0.19
CCDC28AQ8IWP9 CHRNG-202ENST00000389494 2262 ntAPPRIS P1 TSL 5 BASIC13.85□□□□□ -0.19
CCDC28AQ8IWP9 SSR4P1-203ENST00000599569 2260 ntBASIC13.85□□□□□ -0.19
CCDC28AQ8IWP9 SLC25A4-201ENST00000281456 4440 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
CCDC28AQ8IWP9 CSF1-203ENST00000369801 1364 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
CCDC28AQ8IWP9 SAFB2-201ENST00000252542 3371 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
CCDC28AQ8IWP9 DCUN1D3-201ENST00000324344 6162 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
CCDC28AQ8IWP9 TIGD4-201ENST00000304337 2472 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
CCDC28AQ8IWP9 KLF11-205ENST00000535335 4033 ntAPPRIS ALT2 TSL 2 BASIC13.85□□□□□ -0.19
CCDC28AQ8IWP9 DAP-201ENST00000230895 2339 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
CCDC28AQ8IWP9 ZNF586-203ENST00000396154 2163 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
CCDC28AQ8IWP9 FFAR4-201ENST00000371481 3605 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
CCDC28AQ8IWP9 KRT17-205ENST00000540235 1438 ntTSL 5 BASIC13.85□□□□□ -0.19
CCDC28AQ8IWP9 XKRX-202ENST00000468904 2249 ntTSL 2 BASIC13.85□□□□□ -0.19
CCDC28AQ8IWP9 AKAP12-204ENST00000402676 8432 ntAPPRIS P4 TSL 5 BASIC13.85□□□□□ -0.19
CCDC28AQ8IWP9 SHPK-201ENST00000225519 3838 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
CCDC28AQ8IWP9 SEC61A2-206ENST00000379051 707 ntTSL 3 BASIC13.85□□□□□ -0.19
CCDC28AQ8IWP9 HOXA9-202ENST00000396345 797 ntTSL 2 BASIC13.85□□□□□ -0.19
Retrieved 100 of 98,524 protein–RNA pairs in 64.4 ms