Protein–RNA interactions for Protein: Q8IVM0

CCDC50, Coiled-coil domain-containing protein 50, humanhuman

Predictions only

Length 306 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC50Q8IVM0 LINC00910-203ENST00000587874 544 ntTSL 4 BASIC17.52■□□□□ 0.4
CCDC50Q8IVM0 AC011455.1-201ENST00000593830 504 ntTSL 3 BASIC17.52■□□□□ 0.4
CCDC50Q8IVM0 CHMP2A-208ENST00000601220 885 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
CCDC50Q8IVM0 FAM25C-201ENST00000617224 319 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
CCDC50Q8IVM0 SBDS-205ENST00000617799 953 ntAPPRIS ALT1 TSL 5 BASIC17.52■□□□□ 0.4
CCDC50Q8IVM0 REXO1L6P-202ENST00000619970 1078 ntBASIC17.52■□□□□ 0.4
CCDC50Q8IVM0 RANBP3-201ENST00000034275 1762 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
CCDC50Q8IVM0 PAX3-207ENST00000409551 1782 ntAPPRIS ALT1 TSL 1 (best) BASIC17.52■□□□□ 0.4
CCDC50Q8IVM0 MBNL1-202ENST00000282488 6458 ntTSL 5 BASIC17.52■□□□□ 0.4
CCDC50Q8IVM0 SNTG2-202ENST00000407292 1436 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
CCDC50Q8IVM0 KITLG-202ENST00000347404 1948 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
CCDC50Q8IVM0 CEP72-201ENST00000264935 2434 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
CCDC50Q8IVM0 PSME3-202ENST00000441946 2944 ntTSL 2 BASIC17.52■□□□□ 0.4
CCDC50Q8IVM0 ROBO3-201ENST00000397801 4569 ntAPPRIS P2 TSL 1 (best) BASIC17.52■□□□□ 0.39
CCDC50Q8IVM0 ROBO3-220ENST00000538940 4551 ntAPPRIS ALT2 TSL 5 BASIC17.52■□□□□ 0.39
CCDC50Q8IVM0 BX088651.4-201ENST00000435586 2579 ntTSL 2 BASIC17.52■□□□□ 0.39
CCDC50Q8IVM0 CASP2-201ENST00000310447 4225 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
CCDC50Q8IVM0 LRIT1-201ENST00000372105 2228 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
CCDC50Q8IVM0 WBP2-215ENST00000591399 2225 ntAPPRIS P2 TSL 5 BASIC17.52■□□□□ 0.39
CCDC50Q8IVM0 RBPJ-205ENST00000355476 5990 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.39
CCDC50Q8IVM0 MPPED1-202ENST00000417669 3657 ntAPPRIS P1 TSL 5 BASIC17.52■□□□□ 0.39
CCDC50Q8IVM0 WDTC1-202ENST00000361771 4275 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.39
CCDC50Q8IVM0 SARAF-201ENST00000256255 2154 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
CCDC50Q8IVM0 TPD52L2-209ENST00000611972 2197 ntTSL 3 BASIC17.52■□□□□ 0.39
CCDC50Q8IVM0 GPAT2-204ENST00000453542 2466 ntTSL 2 BASIC17.52■□□□□ 0.39
CCDC50Q8IVM0 CPSF4-201ENST00000292476 1691 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.39
CCDC50Q8IVM0 HDAC5-202ENST00000336057 5040 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
CCDC50Q8IVM0 RAD1-208ENST00000628399 1678 ntTSL 3 BASIC17.52■□□□□ 0.39
CCDC50Q8IVM0 TIGAR-201ENST00000179259 2782 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CCDC50Q8IVM0 ESPNL-201ENST00000343063 4836 ntAPPRIS P1 TSL 2 BASIC17.51■□□□□ 0.39
CCDC50Q8IVM0 FBN2-205ENST00000508989 4987 ntTSL 2 BASIC17.51■□□□□ 0.39
CCDC50Q8IVM0 AC024909.3-201ENST00000611513 2257 ntBASIC17.51■□□□□ 0.39
CCDC50Q8IVM0 NEUROD1-201ENST00000295108 2852 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CCDC50Q8IVM0 NFE2L2-201ENST00000397062 2853 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
CCDC50Q8IVM0 ADAMTS13-201ENST00000355699 4442 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
CCDC50Q8IVM0 HLA-F-216ENST00000259951 1635 ntAPPRIS P4 BASIC17.51■□□□□ 0.39
CCDC50Q8IVM0 AP004609.1-201ENST00000498872 1646 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
CCDC50Q8IVM0 FAM208A-201ENST00000355628 5239 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
CCDC50Q8IVM0 MRPL28-201ENST00000199706 1098 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CCDC50Q8IVM0 STAC-201ENST00000273183 3227 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CCDC50Q8IVM0 HDDC3-201ENST00000330334 1047 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
CCDC50Q8IVM0 PAXBP1-202ENST00000331923 3995 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CCDC50Q8IVM0 ARTN-206ENST00000472435 402 ntTSL 3 BASIC17.51■□□□□ 0.39
CCDC50Q8IVM0 AC067930.3-201ENST00000524808 701 ntTSL 3 BASIC17.51■□□□□ 0.39
CCDC50Q8IVM0 C1R-202ENST00000536053 2347 ntTSL 2 BASIC17.51■□□□□ 0.39
CCDC50Q8IVM0 AC125616.1-201ENST00000540369 1015 ntTSL 3 BASIC17.51■□□□□ 0.39
CCDC50Q8IVM0 IRF8-202ENST00000562492 946 ntTSL 3 BASIC17.51■□□□□ 0.39
CCDC50Q8IVM0 BBS2-218ENST00000568104 2623 ntTSL 5 BASIC17.51■□□□□ 0.39
CCDC50Q8IVM0 RNPS1-224ENST00000569598 918 ntTSL 5 BASIC17.51■□□□□ 0.39
CCDC50Q8IVM0 TUBB4A-209ENST00000598006 565 ntTSL 2 BASIC17.51■□□□□ 0.39
CCDC50Q8IVM0 BCAT2-209ENST00000599246 1449 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
CCDC50Q8IVM0 AP001781.3-201ENST00000622211 2939 ntAPPRIS P1 TSL 2 BASIC17.51■□□□□ 0.39
CCDC50Q8IVM0 AC092902.2-205ENST00000622381 394 ntTSL 5 BASIC17.51■□□□□ 0.39
CCDC50Q8IVM0 OPN5-206ENST00000638973 1090 ntTSL 5 BASIC17.51■□□□□ 0.39
CCDC50Q8IVM0 XRRA1-202ENST00000340360 5681 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
CCDC50Q8IVM0 PGAP3-201ENST00000300658 2737 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CCDC50Q8IVM0 HCG18-233ENST00000412685 2552 ntTSL 2 BASIC17.51■□□□□ 0.39
CCDC50Q8IVM0 HSPB7-204ENST00000411503 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CCDC50Q8IVM0 CSAD-208ENST00000444623 2122 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CCDC50Q8IVM0 CLCNKA-203ENST00000439316 1997 ntTSL 2 BASIC17.51■□□□□ 0.39
CCDC50Q8IVM0 TGIF1-205ENST00000401449 1670 ntTSL 2 BASIC17.51■□□□□ 0.39
CCDC50Q8IVM0 NFIX-214ENST00000592199 1509 ntTSL 5 BASIC17.51■□□□□ 0.39
CCDC50Q8IVM0 KCNJ10-208ENST00000639408 1546 ntTSL 5 BASIC17.51■□□□□ 0.39
CCDC50Q8IVM0 SYVN1-202ENST00000307289 2841 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
CCDC50Q8IVM0 KRT85-202ENST00000544265 1387 ntTSL 2 BASIC17.51■□□□□ 0.39
CCDC50Q8IVM0 AC002310.6-201ENST00000624451 1377 ntBASIC17.51■□□□□ 0.39
CCDC50Q8IVM0 AC126755.1-201ENST00000525846 6405 ntBASIC17.51■□□□□ 0.39
CCDC50Q8IVM0 AL353997.2-201ENST00000579352 4955 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
CCDC50Q8IVM0 APLN-201ENST00000429967 3205 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CCDC50Q8IVM0 CTCF-201ENST00000264010 3939 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CCDC50Q8IVM0 FAM83G-201ENST00000345041 2929 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
CCDC50Q8IVM0 SSB-202ENST00000409333 1782 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CCDC50Q8IVM0 MTFR2-203ENST00000420702 1793 ntAPPRIS P2 TSL 2 BASIC17.51■□□□□ 0.39
CCDC50Q8IVM0 PM20D2-201ENST00000275072 4708 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CCDC50Q8IVM0 INHA-201ENST00000243786 1468 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CCDC50Q8IVM0 RALYL-208ENST00000522455 2168 ntAPPRIS ALT2 TSL 2 BASIC17.5■□□□□ 0.39
CCDC50Q8IVM0 FUT3-202ENST00000458379 2024 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CCDC50Q8IVM0 AL953897.1-201ENST00000376620 1868 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
CCDC50Q8IVM0 RUNX1-202ENST00000344691 7274 ntAPPRIS ALT1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CCDC50Q8IVM0 HMGA2-210ENST00000541363 8094 ntAPPRIS ALT1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CCDC50Q8IVM0 CHAD-201ENST00000258969 1739 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CCDC50Q8IVM0 CALCR-207ENST00000426151 1741 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
CCDC50Q8IVM0 GALE-216ENST00000617979 1566 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CCDC50Q8IVM0 SF3A2-201ENST00000221494 1963 ntAPPRIS P2 TSL 1 (best) BASIC17.5■□□□□ 0.39
CCDC50Q8IVM0 AC009292.1-201ENST00000502156 1986 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
CCDC50Q8IVM0 CPEB2-209ENST00000538197 6878 ntAPPRIS P4 TSL 5 BASIC17.5■□□□□ 0.39
CCDC50Q8IVM0 LINC00599-203ENST00000519461 2922 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
CCDC50Q8IVM0 MAPK13-203ENST00000373766 6196 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
CCDC50Q8IVM0 TSC22D4-201ENST00000300181 2383 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CCDC50Q8IVM0 ANKHD1-202ENST00000297183 7606 ntTSL 5 BASIC17.5■□□□□ 0.39
CCDC50Q8IVM0 KCTD7-206ENST00000639828 5951 ntAPPRIS P3 TSL 2 BASIC17.5■□□□□ 0.39
CCDC50Q8IVM0 NANS-201ENST00000210444 1170 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CCDC50Q8IVM0 PTRHD1-201ENST00000328379 1105 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CCDC50Q8IVM0 ELK2BP-201ENST00000415014 1224 ntBASIC17.5■□□□□ 0.39
CCDC50Q8IVM0 AC134772.1-202ENST00000435578 549 ntTSL 4 BASIC17.5■□□□□ 0.39
CCDC50Q8IVM0 DYNC1LI2-202ENST00000440564 1145 ntTSL 2 BASIC17.5■□□□□ 0.39
CCDC50Q8IVM0 MOBP-208ENST00000441980 830 ntAPPRIS P4 TSL 4 BASIC17.5■□□□□ 0.39
CCDC50Q8IVM0 AC093459.1-201ENST00000444567 481 ntTSL 3 BASIC17.5■□□□□ 0.39
CCDC50Q8IVM0 SAPCD2P3-201ENST00000455031 850 ntBASIC17.5■□□□□ 0.39
CCDC50Q8IVM0 PGAP2-206ENST00000459679 795 ntTSL 2 BASIC17.5■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 25.5 ms