Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 SIDT2-217ENST00000532062 2143 ntTSL 2 BASIC10.27□□□□□ -0.77
LINC00643Q86TS7 ETV4-203ENST00000538265 2147 ntTSL 2 BASIC10.27□□□□□ -0.77
LINC00643Q86TS7 ZNF717-204ENST00000478296 3875 ntAPPRIS P1 TSL 5 BASIC10.27□□□□□ -0.77
LINC00643Q86TS7 RCN2-202ENST00000394883 1366 ntTSL 5 BASIC10.26□□□□□ -0.77
LINC00643Q86TS7 PDXK-210ENST00000468090 7297 ntTSL 1 (best) BASIC10.26□□□□□ -0.77
LINC00643Q86TS7 RAB7A-203ENST00000482525 1589 ntTSL 1 (best) BASIC10.26□□□□□ -0.77
LINC00643Q86TS7 HARS2-206ENST00000508522 1562 ntTSL 2 BASIC10.26□□□□□ -0.77
LINC00643Q86TS7 KHK-201ENST00000260598 2397 ntAPPRIS P5 TSL 2 BASIC10.26□□□□□ -0.77
LINC00643Q86TS7 IGHG3-202ENST00000641136 2751 ntAPPRIS P1 BASIC10.26□□□□□ -0.77
LINC00643Q86TS7 ADCY8-202ENST00000377928 3363 ntTSL 1 (best) BASIC10.26□□□□□ -0.77
LINC00643Q86TS7 TRIB1-201ENST00000311922 3635 ntAPPRIS P1 TSL 1 (best) BASIC10.26□□□□□ -0.77
LINC00643Q86TS7 SEMA3F-202ENST00000413852 3212 ntTSL 1 (best) BASIC10.26□□□□□ -0.77
LINC00643Q86TS7 FBRS-201ENST00000287468 2811 ntAPPRIS P1 TSL 5 BASIC10.26□□□□□ -0.77
LINC00643Q86TS7 CDH16-209ENST00000570262 2604 ntTSL 5 BASIC10.26□□□□□ -0.77
LINC00643Q86TS7 GLIS3-201ENST00000324333 6667 ntTSL 1 (best) BASIC10.26□□□□□ -0.77
LINC00643Q86TS7 HTR3A-206ENST00000506841 2221 ntTSL 2 BASIC10.26□□□□□ -0.77
LINC00643Q86TS7 AC068075.1-201ENST00000519714 1832 ntTSL 1 (best) BASIC10.26□□□□□ -0.77
LINC00643Q86TS7 TRPM4-213ENST00000599628 1829 ntTSL 2 BASIC10.26□□□□□ -0.77
LINC00643Q86TS7 TAGLN2-202ENST00000368096 1603 ntTSL 1 (best) BASIC10.26□□□□□ -0.77
LINC00643Q86TS7 GAL3ST1-206ENST00000406955 1635 ntAPPRIS P1 TSL 1 (best) BASIC10.26□□□□□ -0.77
LINC00643Q86TS7 SEL1L-204ENST00000555824 1631 ntTSL 1 (best) BASIC10.26□□□□□ -0.77
LINC00643Q86TS7 KHDC1-202ENST00000370384 1430 ntAPPRIS ALT2 TSL 1 (best) BASIC10.26□□□□□ -0.77
LINC00643Q86TS7 KRT8P11-201ENST00000409686 1436 ntBASIC10.26□□□□□ -0.77
LINC00643Q86TS7 TTC28-AS1-212ENST00000433317 3080 ntTSL 5 BASIC10.26□□□□□ -0.77
LINC00643Q86TS7 PLEKHN1-202ENST00000379409 2455 ntAPPRIS ALT2 TSL 2 BASIC10.26□□□□□ -0.77
LINC00643Q86TS7 LUC7L3-202ENST00000393227 2284 ntTSL 1 (best) BASIC10.26□□□□□ -0.77
LINC00643Q86TS7 AC016757.1-205ENST00000470346 1888 ntTSL 2 BASIC10.26□□□□□ -0.77
LINC00643Q86TS7 AL024508.2-201ENST00000607749 1894 ntBASIC10.26□□□□□ -0.77
LINC00643Q86TS7 ACBD6-201ENST00000367595 1670 ntAPPRIS P1 TSL 1 (best) BASIC10.26□□□□□ -0.77
LINC00643Q86TS7 BTRC-203ENST00000393441 6084 ntTSL 1 (best) BASIC10.26□□□□□ -0.77
LINC00643Q86TS7 TRAF4-205ENST00000444415 1456 ntTSL 5 BASIC10.26□□□□□ -0.77
LINC00643Q86TS7 EFNA2-201ENST00000215368 949 ntAPPRIS P1 TSL 1 (best) BASIC10.26□□□□□ -0.77
LINC00643Q86TS7 PLIN4-201ENST00000301286 6353 ntAPPRIS P2 TSL 5 BASIC10.26□□□□□ -0.77
LINC00643Q86TS7 TMEM88-201ENST00000301599 875 ntAPPRIS P1 TSL 1 (best) BASIC10.26□□□□□ -0.77
LINC00643Q86TS7 RNF5-203ENST00000375094 1168 ntAPPRIS P1 TSL 1 (best) BASIC10.26□□□□□ -0.77
LINC00643Q86TS7 C19orf12-205ENST00000392278 895 ntTSL 2 BASIC10.26□□□□□ -0.77
LINC00643Q86TS7 ATP5G2P3-201ENST00000429083 425 ntBASIC10.26□□□□□ -0.77
LINC00643Q86TS7 AC093752.1-201ENST00000511950 605 ntTSL 4 BASIC10.26□□□□□ -0.77
LINC00643Q86TS7 TMEM218-206ENST00000527766 812 ntAPPRIS P1 TSL 3 BASIC10.26□□□□□ -0.77
LINC00643Q86TS7 JKAMP-207ENST00000554271 2137 ntTSL 2 BASIC10.26□□□□□ -0.77
LINC00643Q86TS7 GOSR2-208ENST00000573224 1115 ntTSL 5 BASIC10.26□□□□□ -0.77
LINC00643Q86TS7 TYROBP-209ENST00000589517 415 ntAPPRIS ALT1 TSL 1 (best) BASIC10.26□□□□□ -0.77
LINC00643Q86TS7 ZNF667-AS1-206ENST00000591797 535 ntTSL 5 BASIC10.26□□□□□ -0.77
LINC00643Q86TS7 GDPGP1-202ENST00000558017 5323 ntAPPRIS P1 TSL 2 BASIC10.26□□□□□ -0.77
LINC00643Q86TS7 MAEL-202ENST00000367872 1908 ntAPPRIS P1 TSL 1 (best) BASIC10.26□□□□□ -0.77
LINC00643Q86TS7 NR1H3-235ENST00000616973 1919 ntTSL 1 (best) BASIC10.26□□□□□ -0.77
LINC00643Q86TS7 MPZL1-203ENST00000392121 3421 ntTSL 2 BASIC10.26□□□□□ -0.77
LINC00643Q86TS7 CHRNA3-201ENST00000326828 3202 ntAPPRIS P1 TSL 1 (best) BASIC10.26□□□□□ -0.77
LINC00643Q86TS7 RECQL5-202ENST00000340830 1749 ntTSL 1 (best) BASIC10.26□□□□□ -0.77
LINC00643Q86TS7 MUTYH-201ENST00000354383 1744 ntAPPRIS P4 TSL 1 (best) BASIC10.26□□□□□ -0.77
LINC00643Q86TS7 GABARAPL1-205ENST00000539170 1700 ntTSL 3 BASIC10.26□□□□□ -0.77
LINC00643Q86TS7 LOXL3-202ENST00000393937 2398 ntTSL 5 BASIC10.26□□□□□ -0.77
LINC00643Q86TS7 NUBPL-201ENST00000281081 3049 ntAPPRIS P1 TSL 1 (best) BASIC10.26□□□□□ -0.77
LINC00643Q86TS7 HTR7-203ENST00000371719 3033 ntAPPRIS ALT1 TSL 1 (best) BASIC10.26□□□□□ -0.77
LINC00643Q86TS7 STRA6-202ENST00000395105 2800 ntAPPRIS P1 TSL 1 (best) BASIC10.26□□□□□ -0.77
LINC00643Q86TS7 AGPAT3-218ENST00000546158 2199 ntAPPRIS P1 TSL 5 BASIC10.26□□□□□ -0.77
LINC00643Q86TS7 PNPLA5-204ENST00000593866 2197 ntTSL 2 BASIC10.26□□□□□ -0.77
LINC00643Q86TS7 SLC25A29-215ENST00000556505 1540 ntTSL 2 BASIC10.26□□□□□ -0.77
LINC00643Q86TS7 SYDE1-201ENST00000342784 3264 ntAPPRIS P1 TSL 2 BASIC10.26□□□□□ -0.77
LINC00643Q86TS7 LINC02346-201ENST00000383019 1967 ntTSL 2 BASIC10.26□□□□□ -0.77
LINC00643Q86TS7 AFDN-205ENST00000392108 6812 ntTSL 1 (best) BASIC10.26□□□□□ -0.77
LINC00643Q86TS7 NXN-202ENST00000537628 1340 ntTSL 3 BASIC10.26□□□□□ -0.77
LINC00643Q86TS7 ARRB1-202ENST00000420843 3336 ntAPPRIS ALT1 TSL 1 (best) BASIC10.26□□□□□ -0.77
LINC00643Q86TS7 MYBPH-202ENST00000621380 1772 ntTSL 5 BASIC10.26□□□□□ -0.77
LINC00643Q86TS7 SLC52A3-205ENST00000632431 2694 ntAPPRIS P1 TSL 1 (best) BASIC10.26□□□□□ -0.77
LINC00643Q86TS7 THBS2-201ENST00000366787 5811 ntAPPRIS P1 TSL 1 (best) BASIC10.26□□□□□ -0.77
LINC00643Q86TS7 TBX3-202ENST00000349155 4723 ntAPPRIS P1 TSL 1 (best) BASIC10.26□□□□□ -0.77
LINC00643Q86TS7 CAVIN1-201ENST00000357037 3828 ntAPPRIS P1 TSL 1 (best) BASIC10.26□□□□□ -0.77
LINC00643Q86TS7 UHMK1-203ENST00000538489 8446 ntTSL 1 (best) BASIC10.26□□□□□ -0.77
LINC00643Q86TS7 AGO3-201ENST00000246314 3211 ntTSL 1 (best) BASIC10.26□□□□□ -0.77
LINC00643Q86TS7 ARMCX2-201ENST00000328766 2762 ntAPPRIS P1 TSL 1 (best) BASIC10.26□□□□□ -0.77
LINC00643Q86TS7 AC140479.7-201ENST00000636301 2332 ntBASIC10.25□□□□□ -0.77
LINC00643Q86TS7 ITPK1-207ENST00000555495 3035 ntTSL 1 (best) BASIC10.25□□□□□ -0.77
LINC00643Q86TS7 TSPOAP1-201ENST00000268893 7483 ntAPPRIS ALT2 TSL 1 (best) BASIC10.25□□□□□ -0.77
LINC00643Q86TS7 FUT3-201ENST00000303225 2584 ntAPPRIS P1 TSL 1 (best) BASIC10.25□□□□□ -0.77
LINC00643Q86TS7 KRT12-201ENST00000251643 1867 ntAPPRIS P1 TSL 1 (best) BASIC10.25□□□□□ -0.77
LINC00643Q86TS7 AL591122.2-201ENST00000624125 1853 ntBASIC10.25□□□□□ -0.77
LINC00643Q86TS7 PASK-204ENST00000405260 4942 ntAPPRIS P3 TSL 5 BASIC10.25□□□□□ -0.77
LINC00643Q86TS7 PGAM1P5-202ENST00000552554 2148 ntTSL 1 (best) BASIC10.25□□□□□ -0.77
LINC00643Q86TS7 ARID3B-201ENST00000346246 4271 ntAPPRIS P3 TSL 1 (best) BASIC10.25□□□□□ -0.77
LINC00643Q86TS7 TRAK2-202ENST00000430254 1436 ntTSL 2 BASIC10.25□□□□□ -0.77
LINC00643Q86TS7 ABCC6-201ENST00000205557 5747 ntAPPRIS P1 TSL 1 (best) BASIC10.25□□□□□ -0.77
LINC00643Q86TS7 SOGA3-207ENST00000481848 11464 ntAPPRIS P5 TSL 5 BASIC10.25□□□□□ -0.77
LINC00643Q86TS7 ARHGAP4-203ENST00000370028 3372 ntAPPRIS ALT2 TSL 1 (best) BASIC10.25□□□□□ -0.77
LINC00643Q86TS7 PSD-202ENST00000406432 3861 ntAPPRIS P1 TSL 1 (best) BASIC10.25□□□□□ -0.77
LINC00643Q86TS7 LRRC41-201ENST00000343304 2947 ntAPPRIS P1 TSL 1 (best) BASIC10.25□□□□□ -0.77
LINC00643Q86TS7 NACC2-202ENST00000371753 6802 ntAPPRIS P1 TSL 1 (best) BASIC10.25□□□□□ -0.77
LINC00643Q86TS7 HPCAL4-201ENST00000372844 4856 ntAPPRIS P1 TSL 1 (best) BASIC10.25□□□□□ -0.77
LINC00643Q86TS7 PCDHB5-201ENST00000231134 3408 ntAPPRIS P1 BASIC10.25□□□□□ -0.77
LINC00643Q86TS7 TPSD1-201ENST00000211076 1499 ntAPPRIS P2 TSL 1 (best) BASIC10.25□□□□□ -0.77
LINC00643Q86TS7 KXD1-202ENST00000539106 1496 ntAPPRIS P1 TSL 3 BASIC10.25□□□□□ -0.77
LINC00643Q86TS7 SPOCD1-201ENST00000257100 2472 ntAPPRIS ALT2 TSL 2 BASIC10.25□□□□□ -0.77
LINC00643Q86TS7 LPO-201ENST00000262290 2979 ntAPPRIS P3 TSL 1 (best) BASIC10.25□□□□□ -0.77
LINC00643Q86TS7 RIC1-203ENST00000414202 6774 ntAPPRIS P1 TSL 5 BASIC10.25□□□□□ -0.77
LINC00643Q86TS7 TTLL10-AS1-201ENST00000379317 3532 ntTSL 2 BASIC10.25□□□□□ -0.77
LINC00643Q86TS7 PRRT2-201ENST00000300797 3002 ntTSL 2 BASIC10.25□□□□□ -0.77
LINC00643Q86TS7 AGPAT1-201ENST00000336984 2021 ntAPPRIS P1 TSL 1 (best) BASIC10.25□□□□□ -0.77
LINC00643Q86TS7 UTF1-201ENST00000304477 1157 ntAPPRIS P1 TSL 1 (best) BASIC10.25□□□□□ -0.77
LINC00643Q86TS7 LARP6-202ENST00000344870 527 ntTSL 1 (best) BASIC10.25□□□□□ -0.77
LINC00643Q86TS7 IL20RA-202ENST00000367746 1244 ntTSL 2 BASIC10.25□□□□□ -0.77
Retrieved 100 of 98,524 protein–RNA pairs in 36.8 ms