Protein–RNA interactions for Protein: Q7Z3V4

UBE3B, Ubiquitin-protein ligase E3B, humanhuman

Predictions only

Length 1,068 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3BQ7Z3V4 NFIC-203ENST00000443272 1716 ntAPPRIS P1 TSL 2 BASIC20.49■□□□□ 0.87
UBE3BQ7Z3V4 AC005622.1-201ENST00000636801 1703 ntBASIC20.49■□□□□ 0.87
UBE3BQ7Z3V4 LBX2-AS1-201ENST00000548978 1852 ntTSL 3 BASIC20.49■□□□□ 0.87
UBE3BQ7Z3V4 PROSER2-201ENST00000277570 3333 ntAPPRIS P2 TSL 1 (best) BASIC20.49■□□□□ 0.87
UBE3BQ7Z3V4 MKRN3-203ENST00000568252 1312 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
UBE3BQ7Z3V4 BEND4-203ENST00000611697 1348 ntTSL 2 BASIC20.49■□□□□ 0.87
UBE3BQ7Z3V4 TEAD3-204ENST00000639578 1308 ntAPPRIS P2 TSL 1 (best) BASIC20.49■□□□□ 0.87
UBE3BQ7Z3V4 DNAJC7-201ENST00000316603 1468 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
UBE3BQ7Z3V4 PAX3-207ENST00000409551 1782 ntAPPRIS ALT1 TSL 1 (best) BASIC20.49■□□□□ 0.87
UBE3BQ7Z3V4 ANKRD20A5P-207ENST00000581935 2089 ntTSL 2 BASIC20.49■□□□□ 0.87
UBE3BQ7Z3V4 AIFM1-202ENST00000319908 2248 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
UBE3BQ7Z3V4 AC011676.5-201ENST00000624864 2660 ntBASIC20.49■□□□□ 0.87
UBE3BQ7Z3V4 ISG20L2-202ENST00000368219 2310 ntAPPRIS P1 TSL 5 BASIC20.48■□□□□ 0.87
UBE3BQ7Z3V4 KDM1A-201ENST00000356634 3033 ntAPPRIS P3 TSL 1 (best) BASIC20.48■□□□□ 0.87
UBE3BQ7Z3V4 CHRNA4-201ENST00000370263 5577 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
UBE3BQ7Z3V4 DUPD1-201ENST00000338487 663 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
UBE3BQ7Z3V4 MB-201ENST00000359787 1170 ntAPPRIS P1 TSL 2 BASIC20.48■□□□□ 0.87
UBE3BQ7Z3V4 XAGE1A-203ENST00000375602 614 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
UBE3BQ7Z3V4 XAGE1B-203ENST00000375616 614 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
UBE3BQ7Z3V4 SNRPB-201ENST00000381342 1154 ntAPPRIS ALT1 TSL 1 (best) BASIC20.48■□□□□ 0.87
UBE3BQ7Z3V4 MB-202ENST00000397326 1197 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
UBE3BQ7Z3V4 MB-203ENST00000397328 1153 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
UBE3BQ7Z3V4 AL035633.1-201ENST00000406139 838 ntBASIC20.48■□□□□ 0.87
UBE3BQ7Z3V4 SNRPB-202ENST00000438552 1008 ntAPPRIS P4 TSL 1 (best) BASIC20.48■□□□□ 0.87
UBE3BQ7Z3V4 CD28-203ENST00000458610 705 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
UBE3BQ7Z3V4 HLA-V-204ENST00000476601 1289 ntBASIC20.48■□□□□ 0.87
UBE3BQ7Z3V4 ERGIC1-212ENST00000523291 586 ntTSL 2 BASIC20.48■□□□□ 0.87
UBE3BQ7Z3V4 RN7SL204P-201ENST00000582831 262 ntBASIC20.48■□□□□ 0.87
UBE3BQ7Z3V4 AL133215.2-201ENST00000609242 977 ntBASIC20.48■□□□□ 0.87
UBE3BQ7Z3V4 AL355974.2-201ENST00000614099 556 ntTSL 4 BASIC20.48■□□□□ 0.87
UBE3BQ7Z3V4 AL355974.2-202ENST00000617298 936 ntTSL 3 BASIC20.48■□□□□ 0.87
UBE3BQ7Z3V4 SMARCA4-203ENST00000429416 5691 ntTSL 2 BASIC20.48■□□□□ 0.87
UBE3BQ7Z3V4 USP4-201ENST00000265560 3126 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
UBE3BQ7Z3V4 TLE2-219ENST00000591529 2483 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
UBE3BQ7Z3V4 ZDHHC11-209ENST00000511539 1303 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
UBE3BQ7Z3V4 ZDHHC11B-204ENST00000622126 1301 ntTSL 5 BASIC20.48■□□□□ 0.87
UBE3BQ7Z3V4 DNMT3A-205ENST00000402667 2300 ntAPPRIS ALT1 TSL 5 BASIC20.48■□□□□ 0.87
UBE3BQ7Z3V4 PRPF19-201ENST00000227524 2157 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
UBE3BQ7Z3V4 RGS20-201ENST00000276500 1664 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
UBE3BQ7Z3V4 LY6K-205ENST00000522591 2724 ntAPPRIS ALT2 TSL 2 BASIC20.47■□□□□ 0.87
UBE3BQ7Z3V4 PTPN12-201ENST00000248594 3406 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
UBE3BQ7Z3V4 MAP3K6-202ENST00000374040 4309 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
UBE3BQ7Z3V4 TMEM214-201ENST00000238788 2990 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
UBE3BQ7Z3V4 SNED1-202ENST00000342631 1930 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
UBE3BQ7Z3V4 ETFA-203ENST00000557943 2287 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
UBE3BQ7Z3V4 KIFC3-203ENST00000445690 3379 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
UBE3BQ7Z3V4 HSD17B7P2-202ENST00000494540 1401 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
UBE3BQ7Z3V4 DHCR7-201ENST00000355527 2666 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
UBE3BQ7Z3V4 EPB41L5-203ENST00000443124 2872 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
UBE3BQ7Z3V4 GMNN-201ENST00000230056 1262 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
UBE3BQ7Z3V4 PAM16-201ENST00000318059 587 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
UBE3BQ7Z3V4 CD8B-201ENST00000331469 832 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
UBE3BQ7Z3V4 SNURF-201ENST00000338327 331 ntAPPRIS P1 TSL 5 BASIC20.47■□□□□ 0.87
UBE3BQ7Z3V4 VCX3A-201ENST00000381089 995 ntAPPRIS P2 TSL 1 (best) BASIC20.47■□□□□ 0.87
UBE3BQ7Z3V4 SMAGP-202ENST00000398453 1062 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
UBE3BQ7Z3V4 MRPS18AP1-201ENST00000414458 589 ntBASIC20.47■□□□□ 0.87
UBE3BQ7Z3V4 AL669831.5-201ENST00000434264 844 ntTSL 5 BASIC20.47■□□□□ 0.87
UBE3BQ7Z3V4 AL359815.1-201ENST00000457706 821 ntTSL 2 BASIC20.47■□□□□ 0.87
UBE3BQ7Z3V4 AC138761.1-201ENST00000584393 385 ntBASIC20.47■□□□□ 0.87
UBE3BQ7Z3V4 LINC01775-201ENST00000587826 371 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
UBE3BQ7Z3V4 AC092070.4-201ENST00000599803 507 ntTSL 5 BASIC20.47■□□□□ 0.87
UBE3BQ7Z3V4 TMEM51-202ENST00000376014 1843 ntAPPRIS P1 TSL 2 BASIC20.47■□□□□ 0.87
UBE3BQ7Z3V4 APH1A-202ENST00000360244 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC20.47■□□□□ 0.87
UBE3BQ7Z3V4 MRPS21-201ENST00000581066 1462 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
UBE3BQ7Z3V4 TRAM1-201ENST00000262213 2785 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
UBE3BQ7Z3V4 SRPX-201ENST00000378533 1874 ntAPPRIS P3 TSL 1 (best) BASIC20.47■□□□□ 0.87
UBE3BQ7Z3V4 CD40-207ENST00000620709 1522 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
UBE3BQ7Z3V4 LINC01144-201ENST00000626198 1710 ntBASIC20.47■□□□□ 0.87
UBE3BQ7Z3V4 AZI2-205ENST00000420543 1366 ntTSL 3 BASIC20.46■□□□□ 0.87
UBE3BQ7Z3V4 GTPBP8-202ENST00000383677 1787 ntTSL 3 BASIC20.46■□□□□ 0.87
UBE3BQ7Z3V4 DUSP18-206ENST00000407308 1978 ntAPPRIS P1 TSL 5 BASIC20.46■□□□□ 0.87
UBE3BQ7Z3V4 EDEM1-201ENST00000256497 6146 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
UBE3BQ7Z3V4 SARDH-205ENST00000422262 2367 ntTSL 5 BASIC20.46■□□□□ 0.87
UBE3BQ7Z3V4 CD14-202ENST00000401743 1648 ntAPPRIS P1 TSL 3 BASIC20.46■□□□□ 0.87
UBE3BQ7Z3V4 GPR152-201ENST00000312457 1429 ntAPPRIS P1 BASIC20.46■□□□□ 0.87
UBE3BQ7Z3V4 KRT8-201ENST00000293308 1882 ntAPPRIS P1 TSL 5 BASIC20.46■□□□□ 0.87
UBE3BQ7Z3V4 SLC6A8-204ENST00000430077 1892 ntTSL 2 BASIC20.46■□□□□ 0.87
UBE3BQ7Z3V4 GPS1-208ENST00000578552 1874 ntAPPRIS ALT1 TSL 1 (best) BASIC20.46■□□□□ 0.87
UBE3BQ7Z3V4 GOLGA2P3Y-201ENST00000416946 1653 ntBASIC20.46■□□□□ 0.87
UBE3BQ7Z3V4 TRPM2-208ENST00000621064 1669 ntTSL 5 BASIC20.46■□□□□ 0.87
UBE3BQ7Z3V4 CD1E-212ENST00000368167 1458 ntAPPRIS P4 TSL 1 (best) BASIC20.46■□□□□ 0.87
UBE3BQ7Z3V4 CCDC84-201ENST00000334418 1202 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
UBE3BQ7Z3V4 CRYGN-201ENST00000337323 754 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
UBE3BQ7Z3V4 IFNGR1-201ENST00000367739 2139 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
UBE3BQ7Z3V4 WFDC3-204ENST00000372632 704 ntTSL 3 BASIC20.46■□□□□ 0.87
UBE3BQ7Z3V4 HNRNPA3P1-201ENST00000401429 1139 ntBASIC20.46■□□□□ 0.87
UBE3BQ7Z3V4 TCF20-203ENST00000404876 1058 ntTSL 3 BASIC20.46■□□□□ 0.87
UBE3BQ7Z3V4 RPL37AP1-201ENST00000412502 279 ntBASIC20.46■□□□□ 0.87
UBE3BQ7Z3V4 AC002472.2-201ENST00000442739 958 ntBASIC20.46■□□□□ 0.87
UBE3BQ7Z3V4 LINC01160-202ENST00000450155 894 ntTSL 3 BASIC20.46■□□□□ 0.87
UBE3BQ7Z3V4 HNRNPA3P5-201ENST00000455201 833 ntBASIC20.46■□□□□ 0.87
UBE3BQ7Z3V4 AC002310.2-201ENST00000486926 950 ntTSL 2 BASIC20.46■□□□□ 0.87
UBE3BQ7Z3V4 SLC30A5-203ENST00000502979 681 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
UBE3BQ7Z3V4 TAGLN-206ENST00000530649 1227 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
UBE3BQ7Z3V4 MIR210HG-203ENST00000533920 816 ntTSL 2 BASIC20.46■□□□□ 0.87
UBE3BQ7Z3V4 AC026803.2-201ENST00000599784 819 ntTSL 3 BASIC20.46■□□□□ 0.87
UBE3BQ7Z3V4 AL589739.1-201ENST00000607720 493 ntBASIC20.46■□□□□ 0.87
UBE3BQ7Z3V4 CA12-203ENST00000422263 2556 ntTSL 2 BASIC20.46■□□□□ 0.87
UBE3BQ7Z3V4 TBX18-202ENST00000369663 6245 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
UBE3BQ7Z3V4 RABEP1-202ENST00000537505 5365 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 40.5 ms