Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 DCLK2-204ENST00000506325 2298 ntAPPRIS ALT2 TSL 5 BASIC16.77■□□□□ 0.27
USP39Q53GS9 METTL9-201ENST00000358154 3256 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.27
USP39Q53GS9 MAN2A2-216ENST00000559717 6704 ntAPPRIS P1 TSL 2 BASIC16.77■□□□□ 0.27
USP39Q53GS9 ALMS1P1-202ENST00000450720 1601 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
USP39Q53GS9 SCLT1-205ENST00000503401 1604 ntAPPRIS ALT2 TSL 3 BASIC16.77■□□□□ 0.27
USP39Q53GS9 ARFRP1-212ENST00000618838 1623 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.27
USP39Q53GS9 MAST3-201ENST00000262811 5896 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
USP39Q53GS9 EPN2-203ENST00000395618 2216 ntTSL 2 BASIC16.77■□□□□ 0.27
USP39Q53GS9 EML3-201ENST00000278845 3017 ntAPPRIS ALT1 TSL 5 BASIC16.77■□□□□ 0.27
USP39Q53GS9 SRF-201ENST00000265354 4202 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
USP39Q53GS9 MIB1-201ENST00000261537 9576 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
USP39Q53GS9 CHCHD3-201ENST00000262570 1598 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
USP39Q53GS9 SFT2D3-201ENST00000310981 3735 ntAPPRIS P1 BASIC16.77■□□□□ 0.27
USP39Q53GS9 SLC12A5-201ENST00000243964 6061 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
USP39Q53GS9 NRXN1-204ENST00000401669 5870 ntAPPRIS ALT1 TSL 5 BASIC16.76■□□□□ 0.27
USP39Q53GS9 LRRTM1-202ENST00000409148 2126 ntAPPRIS P1 TSL 4 BASIC16.76■□□□□ 0.27
USP39Q53GS9 N4BP1-201ENST00000262384 7106 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
USP39Q53GS9 GLYCTK-207ENST00000477382 1304 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
USP39Q53GS9 AL162586.1-201ENST00000439298 2055 ntTSL 2 BASIC16.76■□□□□ 0.27
USP39Q53GS9 ABLIM2-203ENST00000361737 3396 ntAPPRIS ALT2 TSL 2 BASIC16.76■□□□□ 0.27
USP39Q53GS9 SLC22A20-204ENST00000530038 1673 ntBASIC16.76■□□□□ 0.27
USP39Q53GS9 MAPKAP1-208ENST00000394063 2977 ntTSL 5 BASIC16.76■□□□□ 0.27
USP39Q53GS9 RNF7-201ENST00000273480 2763 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
USP39Q53GS9 ITGB7-202ENST00000422257 2791 ntAPPRIS P1 TSL 5 BASIC16.76■□□□□ 0.27
USP39Q53GS9 MGEA5-202ENST00000361464 5155 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
USP39Q53GS9 KLK3-201ENST00000326003 1463 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
USP39Q53GS9 AC022201.2-201ENST00000445084 287 ntTSL 5 BASIC16.76■□□□□ 0.27
USP39Q53GS9 MUSTN1-201ENST00000446157 721 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
USP39Q53GS9 LINC01160-202ENST00000450155 894 ntTSL 3 BASIC16.76■□□□□ 0.27
USP39Q53GS9 HLA-J-202ENST00000469281 1241 ntBASIC16.76■□□□□ 0.27
USP39Q53GS9 AC138466.1-201ENST00000535242 391 ntTSL 3 BASIC16.76■□□□□ 0.27
USP39Q53GS9 PTHLH-206ENST00000538310 854 ntTSL 5 BASIC16.76■□□□□ 0.27
USP39Q53GS9 TUBB3-203ENST00000553967 736 ntTSL 2 BASIC16.76■□□□□ 0.27
USP39Q53GS9 AL031717.1-201ENST00000569670 565 ntTSL 4 BASIC16.76■□□□□ 0.27
USP39Q53GS9 TNFRSF13B-206ENST00000583789 859 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
USP39Q53GS9 NOX4-215ENST00000534731 2156 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
USP39Q53GS9 BAG5-202ENST00000337322 1960 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
USP39Q53GS9 OR2C3-203ENST00000617752 2481 ntAPPRIS P1 BASIC16.76■□□□□ 0.27
USP39Q53GS9 GLIS1-201ENST00000312233 2812 ntAPPRIS P2 TSL 2 BASIC16.76■□□□□ 0.27
USP39Q53GS9 HSF2-202ENST00000452194 2643 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
USP39Q53GS9 AMFR-201ENST00000290649 3600 ntAPPRIS P2 TSL 1 (best) BASIC16.76■□□□□ 0.27
USP39Q53GS9 ASB10-202ENST00000377867 1738 ntTSL 2 BASIC16.76■□□□□ 0.27
USP39Q53GS9 TDG-209ENST00000544861 1387 ntTSL 2 BASIC16.76■□□□□ 0.27
USP39Q53GS9 AKIRIN1-202ENST00000432648 2741 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
USP39Q53GS9 CDIPT-209ENST00000569956 1532 ntAPPRIS P1 TSL 5 BASIC16.75■□□□□ 0.27
USP39Q53GS9 CACNA1G-202ENST00000354983 8138 ntAPPRIS ALT2 TSL 5 BASIC16.75■□□□□ 0.27
USP39Q53GS9 EPB41L3-207ENST00000545076 3190 ntAPPRIS ALT2 TSL 2 BASIC16.75■□□□□ 0.27
USP39Q53GS9 OSBP2-211ENST00000446658 2836 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
USP39Q53GS9 PLXNB3-201ENST00000361971 6146 ntAPPRIS P3 TSL 1 (best) BASIC16.75■□□□□ 0.27
USP39Q53GS9 KIF5C-201ENST00000435030 6931 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
USP39Q53GS9 AL079303.2-201ENST00000555107 2613 ntTSL 3 BASIC16.75■□□□□ 0.27
USP39Q53GS9 LAT-202ENST00000360872 1459 ntAPPRIS P3 TSL 2 BASIC16.75■□□□□ 0.27
USP39Q53GS9 FAM53B-AS1-202ENST00000448422 1491 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
USP39Q53GS9 NF1-211ENST00000487476 2265 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
USP39Q53GS9 MEST-202ENST00000341441 2443 ntAPPRIS ALT1 TSL 1 (best) BASIC16.75■□□□□ 0.27
USP39Q53GS9 MFGE8-201ENST00000268150 1937 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
USP39Q53GS9 KDM4F-201ENST00000545950 1917 ntAPPRIS P1 BASIC16.75■□□□□ 0.27
USP39Q53GS9 PTPN18-201ENST00000175756 3669 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
USP39Q53GS9 PHGDH-208ENST00000641023 2096 ntAPPRIS P1 BASIC16.75■□□□□ 0.27
USP39Q53GS9 H2AFV-201ENST00000222690 3804 ntAPPRIS ALT1 TSL 2 BASIC16.75■□□□□ 0.27
USP39Q53GS9 SLC25A1P3-201ENST00000395415 828 ntBASIC16.75■□□□□ 0.27
USP39Q53GS9 ZC3H12D-202ENST00000409948 753 ntTSL 3 BASIC16.75■□□□□ 0.27
USP39Q53GS9 RCAN3-204ENST00000425530 997 ntTSL 5 BASIC16.75■□□□□ 0.27
USP39Q53GS9 NME2P1-201ENST00000426182 414 ntBASIC16.75■□□□□ 0.27
USP39Q53GS9 UFL1-AS1-201ENST00000430796 548 ntTSL 3 BASIC16.75■□□□□ 0.27
USP39Q53GS9 STARD13-205ENST00000439831 945 ntTSL 2 BASIC16.75■□□□□ 0.27
USP39Q53GS9 AHSA2-208ENST00000489653 1197 ntAPPRIS P1 TSL 5 BASIC16.75■□□□□ 0.27
USP39Q53GS9 AC105233.2-201ENST00000523697 349 ntBASIC16.75■□□□□ 0.27
USP39Q53GS9 AF228730.5-201ENST00000530288 346 ntBASIC16.75■□□□□ 0.27
USP39Q53GS9 TATDN3-212ENST00000530441 492 ntTSL 3 BASIC16.75■□□□□ 0.27
USP39Q53GS9 RARRES2P9-201ENST00000565168 469 ntBASIC16.75■□□□□ 0.27
USP39Q53GS9 SPDYE22P-201ENST00000582158 798 ntBASIC16.75■□□□□ 0.27
USP39Q53GS9 ELOF1-205ENST00000589171 743 ntTSL 3 BASIC16.75■□□□□ 0.27
USP39Q53GS9 AC010619.1-201ENST00000599536 675 ntAPPRIS P1 TSL 5 BASIC16.75■□□□□ 0.27
USP39Q53GS9 AC021097.1-201ENST00000607902 574 ntBASIC16.75■□□□□ 0.27
USP39Q53GS9 AL008721.1-201ENST00000609964 604 ntBASIC16.75■□□□□ 0.27
USP39Q53GS9 SNX14-210ENST00000505648 3193 ntTSL 2 BASIC16.75■□□□□ 0.27
USP39Q53GS9 SLC27A2-201ENST00000267842 2394 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
USP39Q53GS9 PKD1P5-201ENST00000532415 10291 ntBASIC16.75■□□□□ 0.27
USP39Q53GS9 STUM-201ENST00000366788 7705 ntAPPRIS P2 TSL 5 BASIC16.75■□□□□ 0.27
USP39Q53GS9 FUT2-201ENST00000391876 1593 ntAPPRIS P1 TSL 2 BASIC16.75■□□□□ 0.27
USP39Q53GS9 ARL6IP6-201ENST00000326446 2805 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
USP39Q53GS9 TSNARE1-205ENST00000520166 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
USP39Q53GS9 AC131009.4-201ENST00000624048 1740 ntBASIC16.75■□□□□ 0.27
USP39Q53GS9 SEPHS1-201ENST00000327347 3273 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
USP39Q53GS9 ATAD3A-207ENST00000536055 2332 ntTSL 2 BASIC16.75■□□□□ 0.27
USP39Q53GS9 ZDHHC9-202ENST00000371064 2473 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
USP39Q53GS9 LTBP4-205ENST00000396819 4764 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
USP39Q53GS9 RABL6-203ENST00000371663 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
USP39Q53GS9 NMRAL1-201ENST00000283429 1376 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
USP39Q53GS9 DZANK1-202ENST00000329494 1389 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
USP39Q53GS9 ABHD3-209ENST00000580981 1836 ntTSL 5 BASIC16.75■□□□□ 0.27
USP39Q53GS9 PSMD12-202ENST00000357146 2437 ntTSL 2 BASIC16.75■□□□□ 0.27
USP39Q53GS9 FBXL22-202ENST00000534939 2443 ntAPPRIS ALT2 TSL 3 BASIC16.75■□□□□ 0.27
USP39Q53GS9 BCAM-206ENST00000589651 2686 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
USP39Q53GS9 NUP62-211ENST00000597029 2053 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
USP39Q53GS9 GSS-201ENST00000216951 1922 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
USP39Q53GS9 CNTRL-208ENST00000373865 1917 ntTSL 5 BASIC16.74■□□□□ 0.27
USP39Q53GS9 MBNL1-201ENST00000282486 6422 ntAPPRIS P4 TSL 5 BASIC16.74■□□□□ 0.27
USP39Q53GS9 CLN5-208ENST00000636183 6664 ntAPPRIS P2 TSL 1 (best) BASIC16.74■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 30.8 ms