Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 CEP164P1-201ENST00000455142 418 ntBASIC11.66□□□□□ -0.54
PRKDCP78527 GDNF-AS1-201ENST00000503382 604 ntTSL 1 (best) BASIC11.66□□□□□ -0.54
PRKDCP78527 NPM1P43-201ENST00000558669 786 ntBASIC11.66□□□□□ -0.54
PRKDCP78527 AC120045.2-201ENST00000567334 178 ntBASIC11.66□□□□□ -0.54
PRKDCP78527 LRRC38-201ENST00000376085 2209 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
PRKDCP78527 TBP-202ENST00000392092 1903 ntAPPRIS P3 TSL 1 (best) BASIC11.66□□□□□ -0.54
PRKDCP78527 P2RY2-201ENST00000311131 2660 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
PRKDCP78527 RAB3IP-207ENST00000483530 1755 ntTSL 1 (best) BASIC11.66□□□□□ -0.54
PRKDCP78527 ARRDC2-201ENST00000222250 2503 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
PRKDCP78527 MED19-201ENST00000337672 1637 ntTSL 1 (best) BASIC11.66□□□□□ -0.54
PRKDCP78527 FAM72B-202ENST00000369390 2396 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
PRKDCP78527 FOSB-213ENST00000615753 1468 ntTSL 1 (best) BASIC11.66□□□□□ -0.54
PRKDCP78527 FXYD6-204ENST00000526014 2171 ntAPPRIS P2 TSL 1 (best) BASIC11.66□□□□□ -0.54
PRKDCP78527 KRT84-201ENST00000257951 2092 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
PRKDCP78527 SHOX-202ENST00000381575 1351 ntTSL 1 (best) BASIC11.66□□□□□ -0.54
PRKDCP78527 TEAD4-203ENST00000397122 1396 ntTSL 1 (best) BASIC11.66□□□□□ -0.54
PRKDCP78527 DLK2-201ENST00000357338 2038 ntAPPRIS P3 TSL 2 BASIC11.66□□□□□ -0.54
PRKDCP78527 PMAIP1-202ENST00000316660 1948 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
PRKDCP78527 KLK11-201ENST00000319720 1198 ntAPPRIS ALT2 TSL 1 (best) BASIC11.66□□□□□ -0.54
PRKDCP78527 AP000356.1-201ENST00000438893 364 ntTSL 3 BASIC11.66□□□□□ -0.54
PRKDCP78527 AC091891.1-201ENST00000560688 688 ntTSL 3 BASIC11.66□□□□□ -0.54
PRKDCP78527 AL445288.1-201ENST00000610846 654 ntTSL 4 BASIC11.66□□□□□ -0.54
PRKDCP78527 GGT3P-201ENST00000412448 2340 ntTSL 2 BASIC11.66□□□□□ -0.54
PRKDCP78527 PRRT4-205ENST00000489835 2313 ntTSL 1 (best) BASIC11.66□□□□□ -0.54
PRKDCP78527 KCNH2-202ENST00000330883 3267 ntTSL 1 (best) BASIC11.66□□□□□ -0.54
PRKDCP78527 KSR1-205ENST00000509603 2731 ntAPPRIS ALT2 TSL 5 BASIC11.66□□□□□ -0.54
PRKDCP78527 FIP1L1-203ENST00000358575 2180 ntAPPRIS P4 TSL 2 BASIC11.66□□□□□ -0.54
PRKDCP78527 TTLL10-201ENST00000379288 2114 ntTSL 1 (best) BASIC11.66□□□□□ -0.54
PRKDCP78527 RNF7-201ENST00000273480 2763 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
PRKDCP78527 FAM198A-202ENST00000430121 3121 ntAPPRIS P2 TSL 5 BASIC11.66□□□□□ -0.54
PRKDCP78527 LIN28B-AS1-203ENST00000636682 1797 ntTSL 3 BASIC11.66□□□□□ -0.54
PRKDCP78527 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC11.66□□□□□ -0.54
PRKDCP78527 PSME1-202ENST00000382708 1136 ntTSL 2 BASIC11.66□□□□□ -0.54
PRKDCP78527 RPSAP31-201ENST00000416648 895 ntBASIC11.66□□□□□ -0.54
PRKDCP78527 TARDBPP1-201ENST00000442013 1203 ntBASIC11.66□□□□□ -0.54
PRKDCP78527 RN7SL8P-201ENST00000461771 266 ntBASIC11.66□□□□□ -0.54
PRKDCP78527 RPL13AP25-201ENST00000484130 612 ntBASIC11.66□□□□□ -0.54
PRKDCP78527 ANAPC11-216ENST00000579133 563 ntTSL 3 BASIC11.66□□□□□ -0.54
PRKDCP78527 CHI3L2-212ENST00000524472 1435 ntTSL 2 BASIC11.65□□□□□ -0.54
PRKDCP78527 AP003392.4-202ENST00000526453 1359 ntTSL 2 BASIC11.65□□□□□ -0.54
PRKDCP78527 GLMP-213ENST00000612353 1365 ntAPPRIS ALT2 TSL 5 BASIC11.65□□□□□ -0.54
PRKDCP78527 GLMP-215ENST00000622703 1364 ntAPPRIS ALT2 TSL 2 BASIC11.65□□□□□ -0.54
PRKDCP78527 PCMTD2-207ENST00000609372 1321 ntTSL 4 BASIC11.65□□□□□ -0.54
PRKDCP78527 ANKRD6-204ENST00000447838 2968 ntAPPRIS P3 TSL 1 (best) BASIC11.65□□□□□ -0.54
PRKDCP78527 TPD52-209ENST00000518937 2856 ntTSL 2 BASIC11.65□□□□□ -0.54
PRKDCP78527 HMGN3-201ENST00000275036 831 ntTSL 1 (best) BASIC11.65□□□□□ -0.54
PRKDCP78527 HMGN3-202ENST00000344726 872 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
PRKDCP78527 ASNA1-201ENST00000357332 1280 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
PRKDCP78527 DGCR5-204ENST00000440005 1299 ntTSL 1 (best) BASIC11.65□□□□□ -0.54
PRKDCP78527 SUPT4H1P2-201ENST00000501248 353 ntBASIC11.65□□□□□ -0.54
PRKDCP78527 AP001790.1-201ENST00000511947 570 ntTSL 4 BASIC11.65□□□□□ -0.54
PRKDCP78527 RAB1B-202ENST00000527397 991 ntTSL 3 BASIC11.65□□□□□ -0.54
PRKDCP78527 AL845331.2-201ENST00000561882 1044 ntAPPRIS P1 TSL 5 BASIC11.65□□□□□ -0.54
PRKDCP78527 TUBB6-210ENST00000590967 430 ntTSL 3 BASIC11.65□□□□□ -0.54
PRKDCP78527 AC132192.2-201ENST00000596206 1147 ntBASIC11.65□□□□□ -0.54
PRKDCP78527 OR2T27-203ENST00000641652 1285 ntAPPRIS P1 BASIC11.65□□□□□ -0.54
PRKDCP78527 SGSH-201ENST00000326317 2784 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
PRKDCP78527 KRT18P55-202ENST00000578578 1546 ntBASIC11.65□□□□□ -0.54
PRKDCP78527 CDK2-204ENST00000553376 1725 ntTSL 5 BASIC11.65□□□□□ -0.54
PRKDCP78527 TH-205ENST00000381175 1898 ntTSL 1 (best) BASIC11.65□□□□□ -0.54
PRKDCP78527 SCYL1-203ENST00000420247 2583 ntTSL 1 (best) BASIC11.65□□□□□ -0.54
PRKDCP78527 ANGPTL8-201ENST00000252453 872 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
PRKDCP78527 CYTL1-201ENST00000307746 1003 ntAPPRIS P2 TSL 1 (best) BASIC11.65□□□□□ -0.54
PRKDCP78527 TRO-205ENST00000399736 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC11.65□□□□□ -0.54
PRKDCP78527 DNAJC27-AS1-207ENST00000451291 488 ntTSL 3 BASIC11.65□□□□□ -0.54
PRKDCP78527 IGHV4-4-201ENST00000455737 417 ntAPPRIS P1 BASIC11.65□□□□□ -0.54
PRKDCP78527 PPOX-204ENST00000462866 473 ntTSL 5 BASIC11.65□□□□□ -0.54
PRKDCP78527 ATP6V1G2-210ENST00000483251 662 ntTSL 3 BASIC11.65□□□□□ -0.54
PRKDCP78527 AC010973.2-201ENST00000485974 1230 ntTSL 2 BASIC11.65□□□□□ -0.54
PRKDCP78527 AC008406.2-201ENST00000507058 532 ntTSL 3 BASIC11.65□□□□□ -0.54
PRKDCP78527 KBTBD4-203ENST00000525720 980 ntTSL 3 BASIC11.65□□□□□ -0.54
PRKDCP78527 AC015660.1-201ENST00000560103 395 ntTSL 3 BASIC11.65□□□□□ -0.54
PRKDCP78527 ARPP19-206ENST00000564163 718 ntTSL 2 BASIC11.65□□□□□ -0.54
PRKDCP78527 AC024267.1-201ENST00000582320 895 ntBASIC11.65□□□□□ -0.54
PRKDCP78527 CENPX-208ENST00000584347 799 ntTSL 2 BASIC11.65□□□□□ -0.54
PRKDCP78527 PLS3-210ENST00000626746 216 ntTSL 4 BASIC11.65□□□□□ -0.54
PRKDCP78527 LSP1-203ENST00000405957 1785 ntAPPRIS ALT2 TSL 5 BASIC11.65□□□□□ -0.54
PRKDCP78527 SEMA6C-209ENST00000613223 1950 ntTSL 5 BASIC11.65□□□□□ -0.54
PRKDCP78527 SERPINF2-203ENST00000450523 1462 ntTSL 2 BASIC11.65□□□□□ -0.54
PRKDCP78527 ACOXL-205ENST00000439055 2373 ntTSL 2 BASIC11.65□□□□□ -0.54
PRKDCP78527 TMEM222-211ENST00000611517 1613 ntAPPRIS P2 TSL 1 (best) BASIC11.65□□□□□ -0.54
PRKDCP78527 AC008132.1-202ENST00000342005 1389 ntBASIC11.65□□□□□ -0.54
PRKDCP78527 C9orf78-201ENST00000372447 1795 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
PRKDCP78527 MRPS22-201ENST00000310776 1120 ntAPPRIS P2 TSL 1 (best) BASIC11.65□□□□□ -0.55
PRKDCP78527 AL163636.1-201ENST00000554286 915 ntTSL 5 BASIC11.65□□□□□ -0.55
PRKDCP78527 LEF1-216ENST00000510624 1472 ntTSL 2 BASIC11.65□□□□□ -0.55
PRKDCP78527 OVOL1-203ENST00000532448 1774 ntTSL 1 (best) BASIC11.65□□□□□ -0.55
PRKDCP78527 CRH-201ENST00000276571 1543 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
PRKDCP78527 SCARF2-203ENST00000623402 3248 ntAPPRIS P3 TSL 1 (best) BASIC11.64□□□□□ -0.55
PRKDCP78527 ESR2-209ENST00000555278 1883 ntTSL 1 (best) BASIC11.64□□□□□ -0.55
PRKDCP78527 IMP3-201ENST00000314852 2028 ntAPPRIS P1 TSL 2 BASIC11.64□□□□□ -0.55
PRKDCP78527 HHIP-AS1-201ENST00000503066 897 ntTSL 5 BASIC11.64□□□□□ -0.55
PRKDCP78527 AC022137.2-201ENST00000503482 481 ntBASIC11.64□□□□□ -0.55
PRKDCP78527 RPS25-202ENST00000527673 835 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
PRKDCP78527 PRMT5-AS1-206ENST00000599580 847 ntTSL 5 BASIC11.64□□□□□ -0.55
PRKDCP78527 MAPK8IP1-201ENST00000241014 3050 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
PRKDCP78527 TMBIM1-201ENST00000258412 2371 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
PRKDCP78527 UPK3BL1-201ENST00000340457 1342 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
PRKDCP78527 MRPL11-201ENST00000310999 1605 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
PRKDCP78527 ZNF711-201ENST00000276123 2887 ntAPPRIS P3 TSL 1 (best) BASIC11.64□□□□□ -0.55
Retrieved 100 of 98,524 protein–RNA pairs in 31.5 ms