Protein–RNA interactions for Protein: P57078

RIPK4, Receptor-interacting serine/threonine-protein kinase 4, humanhuman

Predictions only

Length 832 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RIPK4P57078 SCP2-213ENST00000528311 1896 ntTSL 2 BASIC21.55■■□□□ 1.04
RIPK4P57078 SH3YL1-206ENST00000405430 2064 ntAPPRIS P1 TSL 5 BASIC21.55■■□□□ 1.04
RIPK4P57078 CLU-215ENST00000523500 2381 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
RIPK4P57078 CHAT-201ENST00000337653 2458 ntAPPRIS P4 TSL 1 (best) BASIC21.55■■□□□ 1.04
RIPK4P57078 PNMA6E-202ENST00000633844 2596 ntTSL 3 BASIC21.55■■□□□ 1.04
RIPK4P57078 PANK4-201ENST00000378466 2677 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
RIPK4P57078 FSCN1-201ENST00000382361 2777 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
RIPK4P57078 ADAMTSL5-201ENST00000330475 2857 ntAPPRIS P1 TSL 2 BASIC21.55■■□□□ 1.04
RIPK4P57078 PPM1H-201ENST00000228705 6353 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
RIPK4P57078 PPP4R3A-208ENST00000555462 3236 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
RIPK4P57078 ACAP1-201ENST00000158762 2512 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
RIPK4P57078 F7-201ENST00000346342 2409 ntAPPRIS ALT2 TSL 1 (best) BASIC21.55■■□□□ 1.04
RIPK4P57078 TMEM198B-203ENST00000482378 2230 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
RIPK4P57078 RUNX1-207ENST00000437180 5967 ntAPPRIS P3 TSL 5 BASIC21.55■■□□□ 1.04
RIPK4P57078 HTR3E-201ENST00000335304 1912 ntAPPRIS P3 TSL 1 (best) BASIC21.55■■□□□ 1.04
RIPK4P57078 FAM49B-224ENST00000522941 1700 ntTSL 5 BASIC21.55■■□□□ 1.04
RIPK4P57078 PHKG2-201ENST00000328273 1536 ntAPPRIS ALT1 TSL 5 BASIC21.55■■□□□ 1.04
RIPK4P57078 LIPE-AS1-201ENST00000457234 1501 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
RIPK4P57078 SUZ12-201ENST00000322652 4491 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
RIPK4P57078 STOX1-204ENST00000399169 3281 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
RIPK4P57078 PCDHA5-202ENST00000529859 5218 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
RIPK4P57078 TSC22D4-201ENST00000300181 2383 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
RIPK4P57078 DRC3-201ENST00000313838 2064 ntAPPRIS P1 TSL 5 BASIC21.54■■□□□ 1.04
RIPK4P57078 RAPGEFL1-209ENST00000544503 2079 ntTSL 2 BASIC21.54■■□□□ 1.04
RIPK4P57078 AC112229.1-202ENST00000490013 2918 ntTSL 2 BASIC21.54■■□□□ 1.04
RIPK4P57078 SYT12-203ENST00000525457 1678 ntAPPRIS P1 TSL 2 BASIC21.54■■□□□ 1.04
RIPK4P57078 RABGAP1L-204ENST00000357444 2605 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
RIPK4P57078 WDR90-215ENST00000549091 5589 ntAPPRIS ALT2 TSL 5 BASIC21.54■■□□□ 1.04
RIPK4P57078 ASB6-203ENST00000450050 4535 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
RIPK4P57078 NOL4L-210ENST00000616976 1376 ntTSL 5 BASIC21.54■■□□□ 1.04
RIPK4P57078 TMEM219-201ENST00000279396 999 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
RIPK4P57078 PRRT3-AS1-201ENST00000431558 614 ntTSL 2 BASIC21.54■■□□□ 1.04
RIPK4P57078 TAGLN-206ENST00000530649 1227 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
RIPK4P57078 AC131009.1-201ENST00000539078 426 ntTSL 5 BASIC21.54■■□□□ 1.04
RIPK4P57078 RARRES2P9-201ENST00000565168 469 ntBASIC21.54■■□□□ 1.04
RIPK4P57078 AC027796.2-201ENST00000575326 344 ntBASIC21.54■■□□□ 1.04
RIPK4P57078 AC244153.1-203ENST00000622796 419 ntTSL 2 BASIC21.54■■□□□ 1.04
RIPK4P57078 AL162311.3-201ENST00000555918 2867 ntTSL 2 BASIC21.54■■□□□ 1.04
RIPK4P57078 PLEKHA8P1-201ENST00000256692 1839 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
RIPK4P57078 TMEM39B-201ENST00000336294 1813 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
RIPK4P57078 KCNB1-203ENST00000635465 4114 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
RIPK4P57078 RAB8A-201ENST00000300935 2827 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
RIPK4P57078 SPG7-201ENST00000268704 3076 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
RIPK4P57078 ADAM8-205ENST00000485491 2441 ntTSL 2 BASIC21.54■■□□□ 1.04
RIPK4P57078 ACTN4-201ENST00000252699 4963 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
RIPK4P57078 ZNF346-202ENST00000503039 2774 ntTSL 2 BASIC21.53■■□□□ 1.04
RIPK4P57078 MAP4K1-201ENST00000396857 2653 ntAPPRIS P1 TSL 5 BASIC21.53■■□□□ 1.04
RIPK4P57078 PHF23-202ENST00000454255 1662 ntTSL 2 BASIC21.53■■□□□ 1.04
RIPK4P57078 APBA2-207ENST00000558402 4031 ntAPPRIS P1 TSL 5 BASIC21.53■■□□□ 1.04
RIPK4P57078 TBC1D30-203ENST00000539867 2594 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
RIPK4P57078 AC008677.1-201ENST00000519230 1561 ntBASIC21.53■■□□□ 1.04
RIPK4P57078 MAGEA2-207ENST00000620710 1947 ntAPPRIS P1 TSL 2 BASIC21.53■■□□□ 1.04
RIPK4P57078 PNO1-201ENST00000263657 2286 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
RIPK4P57078 PKD1P1-201ENST00000458669 6805 ntBASIC21.53■■□□□ 1.04
RIPK4P57078 SHE-201ENST00000304760 6243 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
RIPK4P57078 AC022201.2-201ENST00000445084 287 ntTSL 5 BASIC21.53■■□□□ 1.04
RIPK4P57078 SMIM15-AS1-201ENST00000506902 796 ntTSL 3 BASIC21.53■■□□□ 1.04
RIPK4P57078 AC069262.1-201ENST00000539058 672 ntBASIC21.53■■□□□ 1.04
RIPK4P57078 VPS29-207ENST00000549970 818 ntTSL 3 BASIC21.53■■□□□ 1.04
RIPK4P57078 LSM12-202ENST00000585388 942 ntTSL 3 BASIC21.53■■□□□ 1.04
RIPK4P57078 AL157832.3-201ENST00000635764 1005 ntTSL 5 BASIC21.53■■□□□ 1.04
RIPK4P57078 TLE6-202ENST00000452088 1883 ntAPPRIS P3 TSL 1 (best) BASIC21.53■■□□□ 1.04
RIPK4P57078 SEC23A-203ENST00000545328 2734 ntTSL 2 BASIC21.53■■□□□ 1.04
RIPK4P57078 TUBB8-201ENST00000561967 1413 ntTSL 5 BASIC21.53■■□□□ 1.04
RIPK4P57078 SNAI2-201ENST00000020945 2010 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
RIPK4P57078 FAM156B-207ENST00000616419 2032 ntAPPRIS P2 TSL 2 BASIC21.53■■□□□ 1.04
RIPK4P57078 FAM156A-212ENST00000617970 2032 ntAPPRIS P2 TSL 2 BASIC21.53■■□□□ 1.04
RIPK4P57078 COQ7-201ENST00000321998 2657 ntAPPRIS P3 TSL 1 (best) BASIC21.52■■□□□ 1.04
RIPK4P57078 DYNC1LI1-204ENST00000432458 1827 ntTSL 2 BASIC21.52■■□□□ 1.04
RIPK4P57078 DLG4-202ENST00000399506 3185 ntAPPRIS ALT1 TSL 2 BASIC21.52■■□□□ 1.04
RIPK4P57078 LIMS2-217ENST00000545738 1730 ntTSL 5 BASIC21.52■■□□□ 1.04
RIPK4P57078 SMARCA4-203ENST00000429416 5691 ntTSL 2 BASIC21.52■■□□□ 1.04
RIPK4P57078 TXNDC2-201ENST00000306084 1873 ntAPPRIS ALT2 TSL 1 (best) BASIC21.52■■□□□ 1.04
RIPK4P57078 RUNX2-202ENST00000371432 5487 ntAPPRIS ALT2 TSL 5 BASIC21.52■■□□□ 1.04
RIPK4P57078 LHX3-203ENST00000619587 2698 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
RIPK4P57078 SPEM1-201ENST00000323675 982 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
RIPK4P57078 AC004865.2-202ENST00000444348 852 ntTSL 3 BASIC21.52■■□□□ 1.04
RIPK4P57078 ZIC4-214ENST00000491672 925 ntTSL 4 BASIC21.52■■□□□ 1.04
RIPK4P57078 AC108449.3-201ENST00000560714 585 ntTSL 3 BASIC21.52■■□□□ 1.04
RIPK4P57078 TRAPPC6A-202ENST00000585934 758 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
RIPK4P57078 NFE2-201ENST00000312156 1658 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
RIPK4P57078 MMP17-206ENST00000535291 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC21.52■■□□□ 1.04
RIPK4P57078 FOXA1-201ENST00000250448 2862 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
RIPK4P57078 GALNT10-203ENST00000425427 4344 ntTSL 2 BASIC21.52■■□□□ 1.04
RIPK4P57078 ZNF133-205ENST00000401790 2642 ntAPPRIS ALT2 TSL 2 BASIC21.52■■□□□ 1.04
RIPK4P57078 ZNF133-206ENST00000402618 2622 ntTSL 2 BASIC21.52■■□□□ 1.04
RIPK4P57078 HASPIN-201ENST00000325418 2797 ntAPPRIS P1 BASIC21.52■■□□□ 1.03
RIPK4P57078 LINC01660-203ENST00000618517 1859 ntTSL 2 BASIC21.52■■□□□ 1.03
RIPK4P57078 AC090286.1-201ENST00000354432 1489 ntTSL 1 (best) BASIC21.52■■□□□ 1.03
RIPK4P57078 AATK-201ENST00000326724 5257 ntAPPRIS P3 TSL 5 BASIC21.51■■□□□ 1.03
RIPK4P57078 ARID1B-203ENST00000350026 7962 ntAPPRIS P3 TSL 1 (best) BASIC21.51■■□□□ 1.03
RIPK4P57078 LHCGR-203ENST00000403273 1921 ntTSL 5 BASIC21.51■■□□□ 1.03
RIPK4P57078 C1orf56-201ENST00000368926 2096 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
RIPK4P57078 TMEM189-UBE2V1-201ENST00000341698 2757 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
RIPK4P57078 MTHFD1L-211ENST00000611279 3475 ntAPPRIS ALT1 TSL 5 BASIC21.51■■□□□ 1.03
RIPK4P57078 VWA1-203ENST00000476993 4511 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
RIPK4P57078 LSM1-201ENST00000311351 1147 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
RIPK4P57078 HIST2H3D-201ENST00000331491 411 ntAPPRIS P1 BASIC21.51■■□□□ 1.03
RIPK4P57078 ID3-201ENST00000374561 1251 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
RIPK4P57078 UGGT2-202ENST00000376714 1233 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
Retrieved 100 of 98,524 protein–RNA pairs in 34.8 ms