Protein–RNA interactions for Protein: P51790

CLCN3, H(+)/Cl(-) exchange transporter 3, humanhuman

Predictions only

Length 818 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCN3P51790 EHMT1-236ENST00000637161 5049 ntAPPRIS ALT2 TSL 5 BASIC18.06■□□□□ 0.48
CLCN3P51790 DDX1-207ENST00000617198 2257 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
CLCN3P51790 NKAIN1-201ENST00000373736 2589 ntAPPRIS P1 TSL 2 BASIC18.06■□□□□ 0.48
CLCN3P51790 PTPA-223ENST00000452489 2526 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
CLCN3P51790 TEAD3-204ENST00000639578 1308 ntAPPRIS P2 TSL 1 (best) BASIC18.06■□□□□ 0.48
CLCN3P51790 ADAM22-202ENST00000398201 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
CLCN3P51790 ENC1-205ENST00000510316 5381 ntTSL 2 BASIC18.06■□□□□ 0.48
CLCN3P51790 SGSM2-202ENST00000426855 4734 ntAPPRIS ALT1 TSL 1 (best) BASIC18.06■□□□□ 0.48
CLCN3P51790 EDA-204ENST00000374553 5272 ntAPPRIS ALT1 TSL 1 (best) BASIC18.06■□□□□ 0.48
CLCN3P51790 CD8B-201ENST00000331469 832 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
CLCN3P51790 DUPD1-201ENST00000338487 663 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
CLCN3P51790 SNRPB-201ENST00000381342 1154 ntAPPRIS ALT1 TSL 1 (best) BASIC18.06■□□□□ 0.48
CLCN3P51790 HNRNPA3P1-201ENST00000401429 1139 ntBASIC18.06■□□□□ 0.48
CLCN3P51790 SNRPB-202ENST00000438552 1008 ntAPPRIS P4 TSL 1 (best) BASIC18.06■□□□□ 0.48
CLCN3P51790 HNRNPA3P5-201ENST00000455201 833 ntBASIC18.06■□□□□ 0.48
CLCN3P51790 AL359815.1-201ENST00000457706 821 ntTSL 2 BASIC18.06■□□□□ 0.48
CLCN3P51790 HLA-V-204ENST00000476601 1289 ntBASIC18.06■□□□□ 0.48
CLCN3P51790 AC002310.2-201ENST00000486926 950 ntTSL 2 BASIC18.06■□□□□ 0.48
CLCN3P51790 AC092070.4-201ENST00000599803 507 ntTSL 5 BASIC18.06■□□□□ 0.48
CLCN3P51790 MARCH2-206ENST00000601283 747 ntTSL 3 BASIC18.06■□□□□ 0.48
CLCN3P51790 CDCP1-201ENST00000296129 6006 ntAPPRIS P3 TSL 1 (best) BASIC18.06■□□□□ 0.48
CLCN3P51790 SH3BP4-202ENST00000392011 5194 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
CLCN3P51790 ZNF264-202ENST00000536056 2078 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
CLCN3P51790 NFATC4-215ENST00000554661 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
CLCN3P51790 PCDH7-201ENST00000361762 6403 ntAPPRIS P3 TSL 1 (best) BASIC18.06■□□□□ 0.48
CLCN3P51790 ACTRT3-201ENST00000330368 2005 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
CLCN3P51790 EIF3L-202ENST00000406934 2282 ntTSL 2 BASIC18.06■□□□□ 0.48
CLCN3P51790 SLC7A2-205ENST00000522656 2274 ntAPPRIS ALT1 TSL 1 (best) BASIC18.06■□□□□ 0.48
CLCN3P51790 SYT12-203ENST00000525457 1678 ntAPPRIS P1 TSL 2 BASIC18.06■□□□□ 0.48
CLCN3P51790 AC092143.3-201ENST00000565150 1900 ntTSL 5 BASIC18.06■□□□□ 0.48
CLCN3P51790 DOLPP1-202ENST00000372546 2177 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
CLCN3P51790 C2orf81-206ENST00000640868 2407 ntAPPRIS ALT2 BASIC18.06■□□□□ 0.48
CLCN3P51790 FAM181B-201ENST00000329203 3924 ntAPPRIS P1 BASIC18.05■□□□□ 0.48
CLCN3P51790 MED19-201ENST00000337672 1637 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
CLCN3P51790 HNRNPUL1-203ENST00000378215 2864 ntTSL 2 BASIC18.05■□□□□ 0.48
CLCN3P51790 FARP1-242ENST00000627049 5103 ntTSL 5 BASIC18.05■□□□□ 0.48
CLCN3P51790 WIPF1-201ENST00000272746 3028 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
CLCN3P51790 AC026471.1-201ENST00000564629 3026 ntBASIC18.05■□□□□ 0.48
CLCN3P51790 PLEKHG4-205ENST00000450733 4480 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
CLCN3P51790 SGSH-201ENST00000326317 2784 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CLCN3P51790 KCNQ1-201ENST00000155840 3245 ntAPPRIS P2 TSL 1 (best) BASIC18.05■□□□□ 0.48
CLCN3P51790 LAPTM4B-201ENST00000445593 3173 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
CLCN3P51790 AC092171.3-201ENST00000610122 2651 ntBASIC18.05■□□□□ 0.48
CLCN3P51790 PNKD-201ENST00000248451 758 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
CLCN3P51790 MB-201ENST00000359787 1170 ntAPPRIS P1 TSL 2 BASIC18.05■□□□□ 0.48
CLCN3P51790 WFDC3-204ENST00000372632 704 ntTSL 3 BASIC18.05■□□□□ 0.48
CLCN3P51790 MB-202ENST00000397326 1197 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CLCN3P51790 MB-203ENST00000397328 1153 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CLCN3P51790 FBLN7-204ENST00000409667 1124 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
CLCN3P51790 MRPS18AP1-201ENST00000414458 589 ntBASIC18.05■□□□□ 0.48
CLCN3P51790 LINC01160-202ENST00000450155 894 ntTSL 3 BASIC18.05■□□□□ 0.48
CLCN3P51790 FXYD1-202ENST00000455515 594 ntAPPRIS P1 TSL 2 BASIC18.05■□□□□ 0.48
CLCN3P51790 CD28-203ENST00000458610 705 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
CLCN3P51790 AC106795.3-201ENST00000511650 547 ntTSL 4 BASIC18.05■□□□□ 0.48
CLCN3P51790 AC114956.2-201ENST00000512498 572 ntTSL 4 BASIC18.05■□□□□ 0.48
CLCN3P51790 MIR210HG-203ENST00000533920 816 ntTSL 2 BASIC18.05■□□□□ 0.48
CLCN3P51790 LINC01775-201ENST00000587826 371 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
CLCN3P51790 AC026803.2-201ENST00000599784 819 ntTSL 3 BASIC18.05■□□□□ 0.48
CLCN3P51790 ALKBH7-203ENST00000599849 556 ntTSL 3 BASIC18.05■□□□□ 0.48
CLCN3P51790 AL589739.1-201ENST00000607720 493 ntBASIC18.05■□□□□ 0.48
CLCN3P51790 DBI-212ENST00000627305 620 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
CLCN3P51790 DNAJC7-201ENST00000316603 1468 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
CLCN3P51790 USHBP1-203ENST00000431146 2136 ntTSL 2 BASIC18.05■□□□□ 0.48
CLCN3P51790 TRPM2-208ENST00000621064 1669 ntTSL 5 BASIC18.05■□□□□ 0.48
CLCN3P51790 SLC39A1-211ENST00000621013 2322 ntAPPRIS P1 TSL 2 BASIC18.05■□□□□ 0.48
CLCN3P51790 KREMEN1-203ENST00000407188 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
CLCN3P51790 TDRP-201ENST00000324079 3395 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CLCN3P51790 SMPD1-201ENST00000342245 2452 ntAPPRIS ALT1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CLCN3P51790 SH2D3C-213ENST00000629203 2478 ntTSL 2 BASIC18.05■□□□□ 0.48
CLCN3P51790 FAM135A-209ENST00000505769 4806 ntTSL 5 BASIC18.05■□□□□ 0.48
CLCN3P51790 DAPK1-207ENST00000469640 5899 ntTSL 5 BASIC18.05■□□□□ 0.48
CLCN3P51790 MIB2-201ENST00000355826 3290 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
CLCN3P51790 MSMO1-202ENST00000393766 1789 ntTSL 2 BASIC18.04■□□□□ 0.48
CLCN3P51790 MEG3-206ENST00000423456 1771 ntTSL 2 BASIC18.04■□□□□ 0.48
CLCN3P51790 SLC27A2-201ENST00000267842 2394 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CLCN3P51790 ISM1-201ENST00000262487 2593 ntAPPRIS P1 TSL 5 BASIC18.04■□□□□ 0.48
CLCN3P51790 RNF222-201ENST00000344001 2786 ntAPPRIS P1 BASIC18.04■□□□□ 0.48
CLCN3P51790 UBE2O-201ENST00000319380 5436 ntAPPRIS P2 TSL 1 (best) BASIC18.04■□□□□ 0.48
CLCN3P51790 ADNP2-201ENST00000262198 5393 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CLCN3P51790 NEK2-202ENST00000366999 2131 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CLCN3P51790 POLR3E-203ENST00000418581 2529 ntTSL 2 BASIC18.04■□□□□ 0.48
CLCN3P51790 PACS2-202ENST00000430725 2944 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
CLCN3P51790 NOMO2-211ENST00000621364 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
CLCN3P51790 MAP3K6-201ENST00000357582 4136 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CLCN3P51790 TAX1BP1-201ENST00000265393 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
CLCN3P51790 SH3YL1-206ENST00000405430 2064 ntAPPRIS P1 TSL 5 BASIC18.04■□□□□ 0.48
CLCN3P51790 KRT12-201ENST00000251643 1867 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CLCN3P51790 SLC10A3-204ENST00000393587 1862 ntAPPRIS P3 TSL 2 BASIC18.04■□□□□ 0.48
CLCN3P51790 LBX2-AS1-201ENST00000548978 1852 ntTSL 3 BASIC18.04■□□□□ 0.48
CLCN3P51790 RGS20-201ENST00000276500 1664 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CLCN3P51790 MRPS21-201ENST00000581066 1462 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CLCN3P51790 PAM16-201ENST00000318059 587 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CLCN3P51790 CHIA-203ENST00000353665 1214 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
CLCN3P51790 SMAGP-202ENST00000398453 1062 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CLCN3P51790 ZDHHC20-IT1-201ENST00000417513 440 ntTSL 3 BASIC18.04■□□□□ 0.48
CLCN3P51790 AL109741.1-201ENST00000432195 403 ntTSL 2 BASIC18.04■□□□□ 0.48
CLCN3P51790 AL669831.5-201ENST00000434264 844 ntTSL 5 BASIC18.04■□□□□ 0.48
CLCN3P51790 AC016735.2-201ENST00000438736 569 ntTSL 4 BASIC18.04■□□□□ 0.48
CLCN3P51790 AL121753.1-201ENST00000444717 529 ntAPPRIS P1 TSL 3 BASIC18.04■□□□□ 0.48
CLCN3P51790 OARD1-208ENST00000469104 704 ntTSL 2 BASIC18.04■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 26.5 ms