Protein–RNA interactions for Protein: P48230

TM4SF4, Transmembrane 4 L6 family member 4, humanhuman

Predictions only

Length 202 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM4SF4P48230 NPAS3-202ENST00000356141 2802 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
TM4SF4P48230 RHOT1-202ENST00000354266 2919 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
TM4SF4P48230 INPP5J-203ENST00000401755 1751 ntTSL 2 BASIC18.5■□□□□ 0.55
TM4SF4P48230 PCSK6-217ENST00000618548 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
TM4SF4P48230 SLC6A8-204ENST00000430077 1892 ntTSL 2 BASIC18.5■□□□□ 0.55
TM4SF4P48230 PPM1B-201ENST00000282412 2606 ntAPPRIS P4 TSL 1 (best) BASIC18.5■□□□□ 0.55
TM4SF4P48230 FLOT2-202ENST00000394908 2618 ntAPPRIS P3 TSL 1 (best) BASIC18.5■□□□□ 0.55
TM4SF4P48230 CDK13-202ENST00000340829 5066 ntAPPRIS ALT1 TSL 1 (best) BASIC18.5■□□□□ 0.55
TM4SF4P48230 TRIM17-205ENST00000456946 1731 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
TM4SF4P48230 DNM1-211ENST00000627061 2724 ntTSL 5 BASIC18.5■□□□□ 0.55
TM4SF4P48230 HEBP1-201ENST00000014930 1173 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
TM4SF4P48230 POLR2J-201ENST00000292614 932 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
TM4SF4P48230 LSM10-201ENST00000315732 850 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
TM4SF4P48230 SCGN-201ENST00000334979 704 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
TM4SF4P48230 EMC3-AS1-202ENST00000366264 559 ntTSL 4 BASIC18.5■□□□□ 0.55
TM4SF4P48230 WDR3-202ENST00000369441 1035 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
TM4SF4P48230 TREM2-203ENST00000373122 1012 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
TM4SF4P48230 MTHFSD-202ENST00000381214 1210 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
TM4SF4P48230 FXNP2-201ENST00000411625 547 ntBASIC18.5■□□□□ 0.55
TM4SF4P48230 AC074338.1-201ENST00000416825 156 ntBASIC18.5■□□□□ 0.55
TM4SF4P48230 AL591846.1-201ENST00000451736 433 ntBASIC18.5■□□□□ 0.55
TM4SF4P48230 AC103957.2-201ENST00000521218 510 ntTSL 2 BASIC18.5■□□□□ 0.55
TM4SF4P48230 UEVLD-212ENST00000541984 755 ntTSL 3 BASIC18.5■□□□□ 0.55
TM4SF4P48230 AC105129.2-201ENST00000559536 390 ntBASIC18.5■□□□□ 0.55
TM4SF4P48230 AC104758.2-201ENST00000562716 483 ntTSL 3 BASIC18.5■□□□□ 0.55
TM4SF4P48230 AC133919.2-202ENST00000563515 416 ntTSL 3 BASIC18.5■□□□□ 0.55
TM4SF4P48230 AC025810.1-201ENST00000569986 981 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
TM4SF4P48230 MIR4722-201ENST00000578292 60 ntBASIC18.5■□□□□ 0.55
TM4SF4P48230 GNRHR2-203ENST00000581100 1187 ntBASIC18.5■□□□□ 0.55
TM4SF4P48230 LARP4-220ENST00000615080 856 ntTSL 5 BASIC18.5■□□□□ 0.55
TM4SF4P48230 PCSK6-221ENST00000632686 1210 ntTSL 5 BASIC18.5■□□□□ 0.55
TM4SF4P48230 AL358215.2-201ENST00000639693 946 ntTSL 5 BASIC18.5■□□□□ 0.55
TM4SF4P48230 FIBIN-201ENST00000318627 1938 ntAPPRIS P1 BASIC18.5■□□□□ 0.55
TM4SF4P48230 RHBDF1P1-201ENST00000427504 1941 ntBASIC18.5■□□□□ 0.55
TM4SF4P48230 AC092053.1-201ENST00000605787 1936 ntBASIC18.5■□□□□ 0.55
TM4SF4P48230 TUBB6-211ENST00000591208 1492 ntTSL 5 BASIC18.5■□□□□ 0.55
TM4SF4P48230 GOLIM4-201ENST00000309027 2100 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
TM4SF4P48230 ZFYVE28-210ENST00000515169 1590 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
TM4SF4P48230 SCNN1A-205ENST00000396966 2336 ntTSL 3 BASIC18.5■□□□□ 0.55
TM4SF4P48230 TGIF1-205ENST00000401449 1670 ntTSL 2 BASIC18.5■□□□□ 0.55
TM4SF4P48230 SELENBP1-201ENST00000368868 1752 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
TM4SF4P48230 SP140L-204ENST00000444636 1781 ntTSL 5 BASIC18.5■□□□□ 0.55
TM4SF4P48230 TXNDC2-201ENST00000306084 1873 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
TM4SF4P48230 SMUG1-209ENST00000505128 2607 ntTSL 2 BASIC18.5■□□□□ 0.55
TM4SF4P48230 DOK5-201ENST00000262593 1963 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
TM4SF4P48230 KIAA0895-207ENST00000436884 1952 ntTSL 2 BASIC18.5■□□□□ 0.55
TM4SF4P48230 GRAPL-201ENST00000344415 1308 ntAPPRIS P2 TSL 1 (best) BASIC18.49■□□□□ 0.55
TM4SF4P48230 SPIN2A-201ENST00000374906 1319 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
TM4SF4P48230 FAM72C-202ENST00000584486 2297 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
TM4SF4P48230 SHKBP1-201ENST00000291842 2363 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
TM4SF4P48230 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
TM4SF4P48230 LINGO1-204ENST00000561030 2677 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
TM4SF4P48230 BMP2K-208ENST00000628286 3848 ntAPPRIS ALT2 TSL 5 BASIC18.49■□□□□ 0.55
TM4SF4P48230 COTL1-201ENST00000262428 1843 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
TM4SF4P48230 SENP6-202ENST00000370010 4644 ntAPPRIS P3 TSL 1 (best) BASIC18.49■□□□□ 0.55
TM4SF4P48230 RREB1-203ENST00000379933 5826 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
TM4SF4P48230 FAM198A-202ENST00000430121 3121 ntAPPRIS P2 TSL 5 BASIC18.49■□□□□ 0.55
TM4SF4P48230 HIST1H2AH-201ENST00000377459 387 ntAPPRIS P1 BASIC18.49■□□□□ 0.55
TM4SF4P48230 AL662890.1-201ENST00000396818 632 ntBASIC18.49■□□□□ 0.55
TM4SF4P48230 EEF1DP4-201ENST00000446006 880 ntBASIC18.49■□□□□ 0.55
TM4SF4P48230 AL450003.2-201ENST00000450445 428 ntTSL 5 BASIC18.49■□□□□ 0.55
TM4SF4P48230 MPRIPP1-201ENST00000452433 1089 ntBASIC18.49■□□□□ 0.55
TM4SF4P48230 CHIA-209ENST00000483391 1188 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
TM4SF4P48230 PFN2-215ENST00000497148 743 ntTSL 4 BASIC18.49■□□□□ 0.55
TM4SF4P48230 PKD2-202ENST00000502363 1222 ntTSL 5 BASIC18.49■□□□□ 0.55
TM4SF4P48230 MALAT1-213ENST00000618227 593 ntTSL 3 BASIC18.49■□□□□ 0.55
TM4SF4P48230 AC005252.2-201ENST00000624630 1141 ntBASIC18.49■□□□□ 0.55
TM4SF4P48230 LINC00592-202ENST00000640420 768 ntTSL 5 BASIC18.49■□□□□ 0.55
TM4SF4P48230 CEACAM16-201ENST00000405314 1583 ntAPPRIS P1 TSL 5 BASIC18.49■□□□□ 0.55
TM4SF4P48230 LTBR-207ENST00000539925 1665 ntAPPRIS ALT2 TSL 2 BASIC18.49■□□□□ 0.55
TM4SF4P48230 AGXT-201ENST00000307503 1865 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
TM4SF4P48230 AL391256.1-201ENST00000443260 1855 ntBASIC18.49■□□□□ 0.55
TM4SF4P48230 NKX2-2-201ENST00000377142 2092 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
TM4SF4P48230 CCDC120-206ENST00000603986 2379 ntAPPRIS ALT2 TSL 2 BASIC18.49■□□□□ 0.55
TM4SF4P48230 SHISA5-220ENST00000619810 2385 ntTSL 2 BASIC18.49■□□□□ 0.55
TM4SF4P48230 FBXL17-201ENST00000359660 4510 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
TM4SF4P48230 AP1S2-201ENST00000329235 2237 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
TM4SF4P48230 ARCN1-203ENST00000392859 1709 ntTSL 2 BASIC18.49■□□□□ 0.55
TM4SF4P48230 PGPEP1-201ENST00000252813 1409 ntTSL 2 BASIC18.49■□□□□ 0.55
TM4SF4P48230 MAML1-201ENST00000292599 5723 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
TM4SF4P48230 ARPC4-201ENST00000397261 2582 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
TM4SF4P48230 SLC26A5-202ENST00000339444 2474 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
TM4SF4P48230 ABHD14B-206ENST00000483233 2056 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
TM4SF4P48230 RGMB-207ENST00000513185 2052 ntAPPRIS ALT2 TSL 2 BASIC18.48■□□□□ 0.55
TM4SF4P48230 AL031731.1-201ENST00000642131 2094 ntBASIC18.48■□□□□ 0.55
TM4SF4P48230 WRAP73-202ENST00000378322 1998 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
TM4SF4P48230 TVP23C-204ENST00000438826 1852 ntAPPRIS ALT1 TSL 1 (best) BASIC18.48■□□□□ 0.55
TM4SF4P48230 U82695.1-201ENST00000635752 1889 ntBASIC18.48■□□□□ 0.55
TM4SF4P48230 C9orf78-201ENST00000372447 1795 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
TM4SF4P48230 ARRB2-204ENST00000412477 1779 ntTSL 2 BASIC18.48■□□□□ 0.55
TM4SF4P48230 ZSCAN25-201ENST00000262941 1652 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
TM4SF4P48230 C1RL-210ENST00000544702 1569 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
TM4SF4P48230 ETNK2-202ENST00000367201 2431 ntAPPRIS ALT2 TSL 2 BASIC18.48■□□□□ 0.55
TM4SF4P48230 RPS3-201ENST00000278572 907 ntTSL 3 BASIC18.48■□□□□ 0.55
TM4SF4P48230 PRSS55-201ENST00000328655 1124 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
TM4SF4P48230 THEG-202ENST00000346878 1211 ntAPPRIS ALT2 TSL 2 BASIC18.48■□□□□ 0.55
TM4SF4P48230 KRTAP1-4-201ENST00000377747 408 ntAPPRIS P1 BASIC18.48■□□□□ 0.55
TM4SF4P48230 TMEM52-203ENST00000378602 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
TM4SF4P48230 AL929472.3-201ENST00000433474 700 ntTSL 5 BASIC18.48■□□□□ 0.55
TM4SF4P48230 LINC01806-201ENST00000436506 765 ntTSL 2 BASIC18.48■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 62.5 ms