Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 SIGLEC7-201ENST00000305628 1469 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
HLA-DMBP28068 PC-214ENST00000628663 1470 ntTSL 5 BASIC12.65□□□□□ -0.38
HLA-DMBP28068 NF1-211ENST00000487476 2265 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
HLA-DMBP28068 NRXN1-204ENST00000401669 5870 ntAPPRIS ALT1 TSL 5 BASIC12.65□□□□□ -0.38
HLA-DMBP28068 TNKS1BP1-207ENST00000532437 5952 ntAPPRIS P2 TSL 1 (best) BASIC12.65□□□□□ -0.38
HLA-DMBP28068 GTF3C4-201ENST00000372146 9043 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
HLA-DMBP28068 PDCL3-201ENST00000264254 1337 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
HLA-DMBP28068 SYBU-231ENST00000533065 2645 ntAPPRIS ALT2 TSL 2 BASIC12.65□□□□□ -0.38
HLA-DMBP28068 ACE-202ENST00000290866 4959 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
HLA-DMBP28068 ARHGEF28-201ENST00000296794 5246 ntTSL 5 BASIC12.65□□□□□ -0.38
HLA-DMBP28068 GP5-201ENST00000401815 3534 ntAPPRIS P1 BASIC12.65□□□□□ -0.38
HLA-DMBP28068 GNAQ-201ENST00000286548 6539 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
HLA-DMBP28068 LTBP2-201ENST00000261978 8567 ntAPPRIS P2 TSL 1 (best) BASIC12.65□□□□□ -0.38
HLA-DMBP28068 NDUFA6-AS1-203ENST00000439129 2950 ntTSL 5 BASIC12.65□□□□□ -0.38
HLA-DMBP28068 ZFP41-201ENST00000330701 4797 ntAPPRIS P1 TSL 2 BASIC12.65□□□□□ -0.38
HLA-DMBP28068 AFTPH-201ENST00000238855 4113 ntAPPRIS ALT1 TSL 5 BASIC12.65□□□□□ -0.38
HLA-DMBP28068 SMC4-204ENST00000462787 5033 ntTSL 2 BASIC12.65□□□□□ -0.38
HLA-DMBP28068 MMP2-201ENST00000219070 3741 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
HLA-DMBP28068 GPS1-202ENST00000320548 1949 ntTSL 2 BASIC12.65□□□□□ -0.38
HLA-DMBP28068 YPEL3-203ENST00000562641 1941 ntTSL 3 BASIC12.65□□□□□ -0.38
HLA-DMBP28068 AC139530.2-201ENST00000571730 1922 ntAPPRIS P1 TSL 2 BASIC12.65□□□□□ -0.38
HLA-DMBP28068 PPM1E-201ENST00000308249 6542 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
HLA-DMBP28068 ZNF671-201ENST00000317398 2431 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
HLA-DMBP28068 RAB1A-203ENST00000409784 2447 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
HLA-DMBP28068 MAU2-201ENST00000262815 4994 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
HLA-DMBP28068 TMEM89-201ENST00000330862 662 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
HLA-DMBP28068 MRPS18A-201ENST00000372116 785 ntTSL 2 BASIC12.65□□□□□ -0.38
HLA-DMBP28068 DRAP1-202ENST00000376991 819 ntTSL 5 BASIC12.65□□□□□ -0.38
HLA-DMBP28068 HIST2H3DP1-201ENST00000401004 416 ntBASIC12.65□□□□□ -0.38
HLA-DMBP28068 IGF2-206ENST00000418738 934 ntAPPRIS P2 TSL 1 (best) BASIC12.65□□□□□ -0.38
HLA-DMBP28068 SNHG11-204ENST00000420006 720 ntTSL 3 BASIC12.65□□□□□ -0.38
HLA-DMBP28068 SNHG11-206ENST00000432153 1181 ntTSL 3 BASIC12.65□□□□□ -0.38
HLA-DMBP28068 DYNC1LI2-202ENST00000440564 1145 ntTSL 2 BASIC12.65□□□□□ -0.38
HLA-DMBP28068 SCARNA2-201ENST00000458748 420 ntBASIC12.65□□□□□ -0.38
HLA-DMBP28068 TTLL12-204ENST00000494035 888 ntTSL 2 BASIC12.65□□□□□ -0.38
HLA-DMBP28068 MCCC2-205ENST00000509358 1214 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
HLA-DMBP28068 GOLGA7-203ENST00000518270 808 ntAPPRIS P1 TSL 5 BASIC12.65□□□□□ -0.38
HLA-DMBP28068 PENK-208ENST00000523051 772 ntTSL 5 BASIC12.65□□□□□ -0.38
HLA-DMBP28068 ATP5G2-204ENST00000549164 745 ntAPPRIS P1 TSL 3 BASIC12.65□□□□□ -0.38
HLA-DMBP28068 ZFPM1-204ENST00000563351 808 ntTSL 2 BASIC12.65□□□□□ -0.38
HLA-DMBP28068 AC135776.2-201ENST00000567803 714 ntTSL 4 BASIC12.65□□□□□ -0.38
HLA-DMBP28068 MPDU1-223ENST00000582151 728 ntBASIC12.65□□□□□ -0.38
HLA-DMBP28068 ATP5G2-209ENST00000602871 668 ntAPPRIS P1 TSL 2 BASIC12.65□□□□□ -0.38
HLA-DMBP28068 NXNL2-205ENST00000618633 739 ntTSL 5 BASIC12.65□□□□□ -0.38
HLA-DMBP28068 IZUMO4-213ENST00000620263 947 ntTSL 3 BASIC12.65□□□□□ -0.38
HLA-DMBP28068 AC004706.3-202ENST00000621574 984 ntBASIC12.65□□□□□ -0.38
HLA-DMBP28068 MCRIP2-211ENST00000629534 341 ntTSL 2 BASIC12.65□□□□□ -0.38
HLA-DMBP28068 FAM238C-204ENST00000640224 1268 ntTSL 5 BASIC12.65□□□□□ -0.38
HLA-DMBP28068 PCSK4-201ENST00000300954 2661 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
HLA-DMBP28068 RANBP3-201ENST00000034275 1762 ntAPPRIS ALT2 TSL 1 (best) BASIC12.65□□□□□ -0.38
HLA-DMBP28068 GFAP-203ENST00000435360 1779 ntTSL 2 BASIC12.65□□□□□ -0.38
HLA-DMBP28068 FAM104A-201ENST00000403627 2798 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
HLA-DMBP28068 HLA-F-216ENST00000259951 1635 ntAPPRIS P4 BASIC12.65□□□□□ -0.38
HLA-DMBP28068 PRMT6-201ENST00000370078 2616 ntAPPRIS P1 BASIC12.65□□□□□ -0.38
HLA-DMBP28068 NKIRAS1-208ENST00000443659 2391 ntAPPRIS P2 TSL 5 BASIC12.65□□□□□ -0.38
HLA-DMBP28068 ST6GALNAC6-216ENST00000622357 2396 ntAPPRIS ALT1 TSL 1 (best) BASIC12.65□□□□□ -0.38
HLA-DMBP28068 MOB3B-201ENST00000262244 6454 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
HLA-DMBP28068 MLLT6-210ENST00000620609 2714 ntAPPRIS ALT2 TSL 1 (best) BASIC12.65□□□□□ -0.38
HLA-DMBP28068 NRP1-203ENST00000374821 1988 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
HLA-DMBP28068 TUBB4A-201ENST00000264071 2552 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.39
HLA-DMBP28068 THOC5-202ENST00000397871 2560 ntAPPRIS P1 TSL 5 BASIC12.65□□□□□ -0.39
HLA-DMBP28068 H1F0-201ENST00000340857 2344 ntAPPRIS P1 BASIC12.65□□□□□ -0.39
HLA-DMBP28068 AL031731.1-201ENST00000642131 2094 ntBASIC12.65□□□□□ -0.39
HLA-DMBP28068 ZXDA-201ENST00000358697 4113 ntAPPRIS P1 BASIC12.64□□□□□ -0.39
HLA-DMBP28068 TSC2-202ENST00000350773 5532 ntAPPRIS ALT2 TSL 1 (best) BASIC12.64□□□□□ -0.39
HLA-DMBP28068 LTBR-201ENST00000228918 2260 ntAPPRIS P3 TSL 1 (best) BASIC12.64□□□□□ -0.39
HLA-DMBP28068 VWA2-203ENST00000603594 2600 ntTSL 2 BASIC12.64□□□□□ -0.39
HLA-DMBP28068 PRSS50-201ENST00000460241 2960 ntAPPRIS P1 TSL 2 BASIC12.64□□□□□ -0.39
HLA-DMBP28068 CXorf40B-205ENST00000462691 1440 ntAPPRIS ALT1 TSL 3 BASIC12.64□□□□□ -0.39
HLA-DMBP28068 ZFP1-208ENST00000568079 1426 ntTSL 2 BASIC12.64□□□□□ -0.39
HLA-DMBP28068 MTFR2-203ENST00000420702 1793 ntAPPRIS P2 TSL 2 BASIC12.64□□□□□ -0.39
HLA-DMBP28068 PDE4DIP-201ENST00000313431 5676 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
HLA-DMBP28068 GMPPA-204ENST00000373908 1501 ntAPPRIS P1 TSL 5 BASIC12.64□□□□□ -0.39
HLA-DMBP28068 KCNJ10-208ENST00000639408 1546 ntTSL 5 BASIC12.64□□□□□ -0.39
HLA-DMBP28068 RNH1-204ENST00000397614 1864 ntAPPRIS P1 TSL 5 BASIC12.64□□□□□ -0.39
HLA-DMBP28068 MLLT10-203ENST00000377072 5126 ntAPPRIS P3 TSL 1 (best) BASIC12.64□□□□□ -0.39
HLA-DMBP28068 HNRNPLL-212ENST00000608859 3035 ntTSL 5 BASIC12.64□□□□□ -0.39
HLA-DMBP28068 GATA3-201ENST00000346208 2654 ntAPPRIS P3 TSL 1 (best) BASIC12.64□□□□□ -0.39
HLA-DMBP28068 VASP-201ENST00000245932 2305 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
HLA-DMBP28068 TMEM184A-201ENST00000297477 6276 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
HLA-DMBP28068 CTCFL-215ENST00000608158 1984 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
HLA-DMBP28068 TEAD4-201ENST00000358409 1637 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
HLA-DMBP28068 SMAD6-201ENST00000288840 3835 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
HLA-DMBP28068 EXOSC4-201ENST00000316052 887 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
HLA-DMBP28068 ZNF7-201ENST00000325217 592 ntTSL 4 BASIC12.64□□□□□ -0.39
HLA-DMBP28068 SMIM29-201ENST00000335352 1160 ntTSL 2 BASIC12.64□□□□□ -0.39
HLA-DMBP28068 DUSP12-201ENST00000367943 1270 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
HLA-DMBP28068 SERF1B-202ENST00000380751 703 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
HLA-DMBP28068 FAM3A-205ENST00000393572 1041 ntTSL 2 BASIC12.64□□□□□ -0.39
HLA-DMBP28068 UPK3A-202ENST00000396082 627 ntAPPRIS ALT2 TSL 1 (best) BASIC12.64□□□□□ -0.39
HLA-DMBP28068 MYCNOS-201ENST00000419083 770 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
HLA-DMBP28068 MMP24-AS1-201ENST00000424358 867 ntAPPRIS P1 TSL 2 BASIC12.64□□□□□ -0.39
HLA-DMBP28068 PMS2P1-201ENST00000431037 1228 ntBASIC12.64□□□□□ -0.39
HLA-DMBP28068 KRT18P67-201ENST00000432816 1264 ntBASIC12.64□□□□□ -0.39
HLA-DMBP28068 FIGNL1-207ENST00000435566 593 ntTSL 4 BASIC12.64□□□□□ -0.39
HLA-DMBP28068 MOBP-208ENST00000441980 830 ntAPPRIS P4 TSL 4 BASIC12.64□□□□□ -0.39
HLA-DMBP28068 AC080075.1-201ENST00000469747 427 ntTSL 2 BASIC12.64□□□□□ -0.39
HLA-DMBP28068 TXNRD2-212ENST00000485358 850 ntTSL 2 BASIC12.64□□□□□ -0.39
HLA-DMBP28068 SLC25A6P2-201ENST00000497974 877 ntBASIC12.64□□□□□ -0.39
HLA-DMBP28068 AC073648.2-201ENST00000510116 352 ntBASIC12.64□□□□□ -0.39
Retrieved 100 of 98,524 protein–RNA pairs in 47.8 ms