Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 RPL13-214ENST00000567815 712 ntAPPRIS P1 TSL 3 BASIC14.03□□□□□ -0.16
USF1P22415 AJ003147.2-201ENST00000576468 629 ntTSL 3 BASIC14.03□□□□□ -0.16
USF1P22415 KRT16P2-202ENST00000579062 563 ntTSL 4 BASIC14.03□□□□□ -0.16
USF1P22415 CBR3-AS1-216ENST00000624883 564 ntTSL 3 BASIC14.03□□□□□ -0.16
USF1P22415 AP001350.2-201ENST00000625104 1094 ntBASIC14.03□□□□□ -0.16
USF1P22415 RCAN3-211ENST00000630217 658 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
USF1P22415 NUCKS1-201ENST00000367142 6496 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
USF1P22415 SARDH-202ENST00000371867 1326 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
USF1P22415 ZDHHC11-209ENST00000511539 1303 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
USF1P22415 ZDHHC11B-204ENST00000622126 1301 ntTSL 5 BASIC14.03□□□□□ -0.16
USF1P22415 WASH6P-202ENST00000359512 1437 ntBASIC14.03□□□□□ -0.16
USF1P22415 AL139398.1-201ENST00000638795 1529 ntTSL 5 BASIC14.03□□□□□ -0.16
USF1P22415 SELENOF-208ENST00000616787 1835 ntAPPRIS ALT1 TSL 5 BASIC14.03□□□□□ -0.16
USF1P22415 ICAM3-205ENST00000589261 2024 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
USF1P22415 MFSD2A-201ENST00000372809 2173 ntTSL 2 BASIC14.03□□□□□ -0.16
USF1P22415 ATOH1-201ENST00000306011 2212 ntAPPRIS P1 BASIC14.03□□□□□ -0.16
USF1P22415 SMOX-205ENST00000379460 2230 ntAPPRIS P1 TSL 2 BASIC14.03□□□□□ -0.16
USF1P22415 TCAF2-203ENST00000425618 2448 ntTSL 2 BASIC14.03□□□□□ -0.16
USF1P22415 NELFA-216ENST00000542778 2465 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
USF1P22415 C12orf56-207ENST00000543942 3242 ntAPPRIS P1 TSL 5 BASIC14.03□□□□□ -0.16
USF1P22415 APBA2-207ENST00000558402 4031 ntAPPRIS P1 TSL 5 BASIC14.03□□□□□ -0.16
USF1P22415 SETD1B-201ENST00000267197 5772 ntAPPRIS ALT2 TSL 5 BASIC14.02□□□□□ -0.16
USF1P22415 ZNF281-203ENST00000367353 3080 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.16
USF1P22415 TNIP1-208ENST00000520931 2680 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.16
USF1P22415 CREB3L1-206ENST00000621158 2687 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
USF1P22415 IL4I1-204ENST00000595948 2407 ntAPPRIS P4 TSL 1 (best) BASIC14.02□□□□□ -0.16
USF1P22415 EIF3L-202ENST00000406934 2282 ntTSL 2 BASIC14.02□□□□□ -0.16
USF1P22415 UNC119-204ENST00000470125 2050 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
USF1P22415 TMPRSS5-207ENST00000540540 2001 ntTSL 2 BASIC14.02□□□□□ -0.16
USF1P22415 SFTPB-202ENST00000409383 1867 ntAPPRIS P2 TSL 1 (best) BASIC14.02□□□□□ -0.16
USF1P22415 CFAP77-201ENST00000343036 1818 ntAPPRIS P3 TSL 2 BASIC14.02□□□□□ -0.16
USF1P22415 OTUD5-204ENST00000428668 1493 ntTSL 2 BASIC14.02□□□□□ -0.16
USF1P22415 ZFP1-208ENST00000568079 1426 ntTSL 2 BASIC14.02□□□□□ -0.16
USF1P22415 CABP2-201ENST00000294288 925 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
USF1P22415 TNNC2-201ENST00000372555 710 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
USF1P22415 C6orf52-202ENST00000379586 430 ntAPPRIS ALT2 TSL 2 BASIC14.02□□□□□ -0.17
USF1P22415 CEP19-201ENST00000399942 1172 ntAPPRIS ALT2 TSL 5 BASIC14.02□□□□□ -0.17
USF1P22415 ZNF655-216ENST00000449244 544 ntTSL 4 BASIC14.02□□□□□ -0.17
USF1P22415 TSC22D3-213ENST00000506081 956 ntTSL 5 BASIC14.02□□□□□ -0.17
USF1P22415 IGHV3-42-201ENST00000520410 361 ntBASIC14.02□□□□□ -0.17
USF1P22415 LINC01225-203ENST00000563550 1244 ntBASIC14.02□□□□□ -0.17
USF1P22415 AC026150.2-201ENST00000564693 1156 ntBASIC14.02□□□□□ -0.17
USF1P22415 NAA60-208ENST00000570819 833 ntTSL 2 BASIC14.02□□□□□ -0.17
USF1P22415 IGFLR1-205ENST00000588992 730 ntAPPRIS ALT2 TSL 2 BASIC14.02□□□□□ -0.17
USF1P22415 LIM2-202ENST00000596399 861 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
USF1P22415 CKMT1B-215ENST00000627381 1074 ntTSL 5 BASIC14.02□□□□□ -0.17
USF1P22415 SCN3B-202ENST00000392770 6061 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
USF1P22415 TMEM237-202ENST00000409444 5592 ntAPPRIS ALT2 TSL 5 BASIC14.02□□□□□ -0.17
USF1P22415 PCDHA3-201ENST00000522353 5260 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
USF1P22415 QSOX1-201ENST00000367600 2519 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.17
USF1P22415 NT5DC3-201ENST00000392876 7207 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
USF1P22415 FOXD4L4-201ENST00000377413 2230 ntAPPRIS P1 BASIC14.02□□□□□ -0.17
USF1P22415 FBXO7-201ENST00000266087 2195 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
USF1P22415 PML-206ENST00000395135 2199 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.17
USF1P22415 SMC4-204ENST00000462787 5033 ntTSL 2 BASIC14.02□□□□□ -0.17
USF1P22415 TEAD2-204ENST00000593945 2141 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
USF1P22415 ESPNL-201ENST00000343063 4836 ntAPPRIS P1 TSL 2 BASIC14.02□□□□□ -0.17
USF1P22415 PDE3A-201ENST00000359062 7576 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
USF1P22415 NFATC4-201ENST00000250373 4749 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.17
USF1P22415 TRIM71-201ENST00000383763 8685 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
USF1P22415 BNC1-201ENST00000345382 4610 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.17
USF1P22415 EPHX2-204ENST00000518379 1959 ntAPPRIS ALT2 TSL 5 BASIC14.02□□□□□ -0.17
USF1P22415 SPDEF-201ENST00000374037 1895 ntAPPRIS P3 TSL 1 (best) BASIC14.01□□□□□ -0.17
USF1P22415 AC008894.3-201ENST00000624324 3103 ntBASIC14.01□□□□□ -0.17
USF1P22415 LYPLAL1-201ENST00000366927 1819 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
USF1P22415 HS6ST2-203ENST00000406696 1818 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
USF1P22415 GDF11-201ENST00000257868 8657 ntAPPRIS P2 TSL 1 (best) BASIC14.01□□□□□ -0.17
USF1P22415 TRIM17-201ENST00000295033 1730 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
USF1P22415 LEMD3-201ENST00000308330 4764 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
USF1P22415 TGFBR2-202ENST00000359013 4605 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
USF1P22415 HIBCH-202ENST00000392332 2463 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
USF1P22415 BORCS8-203ENST00000477565 1489 ntAPPRIS ALT1 TSL 1 (best) BASIC14.01□□□□□ -0.17
USF1P22415 NDUFV1-223ENST00000532303 1493 ntTSL 2 BASIC14.01□□□□□ -0.17
USF1P22415 RNF168-201ENST00000318037 5347 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
USF1P22415 PCDHGC3-205ENST00000617641 2346 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
USF1P22415 DUS3L-202ENST00000320699 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
USF1P22415 LDOC1-201ENST00000370526 1381 ntAPPRIS P1 BASIC14.01□□□□□ -0.17
USF1P22415 ACP5-203ENST00000433365 1397 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
USF1P22415 NAGPA-201ENST00000312251 2202 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
USF1P22415 PHLDB1-202ENST00000361417 5753 ntAPPRIS P3 TSL 1 (best) BASIC14.01□□□□□ -0.17
USF1P22415 C8orf76-201ENST00000276704 1341 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
USF1P22415 PIP5KL1-201ENST00000300432 1104 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
USF1P22415 TPM2-201ENST00000329305 1018 ntAPPRIS ALT1 TSL 2 BASIC14.01□□□□□ -0.17
USF1P22415 GUK1-210ENST00000391865 990 ntAPPRIS ALT1 TSL 1 (best) BASIC14.01□□□□□ -0.17
USF1P22415 RBM43-202ENST00000409092 579 ntAPPRIS ALT2 TSL 2 BASIC14.01□□□□□ -0.17
USF1P22415 AC104135.1-201ENST00000418001 763 ntTSL 5 BASIC14.01□□□□□ -0.17
USF1P22415 U52111.1-201ENST00000434284 914 ntTSL 3 BASIC14.01□□□□□ -0.17
USF1P22415 AC244107.1-201ENST00000442033 332 ntBASIC14.01□□□□□ -0.17
USF1P22415 FXYD1-202ENST00000455515 594 ntAPPRIS P1 TSL 2 BASIC14.01□□□□□ -0.17
USF1P22415 LINC01812-201ENST00000457448 725 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
USF1P22415 AL512638.1-201ENST00000457493 794 ntBASIC14.01□□□□□ -0.17
USF1P22415 RAD51D-205ENST00000460118 1064 ntTSL 5 BASIC14.01□□□□□ -0.17
USF1P22415 TMEM176B-206ENST00000492607 1265 ntAPPRIS P1 TSL 5 BASIC14.01□□□□□ -0.17
USF1P22415 ZNF789-211ENST00000493485 556 ntTSL 4 BASIC14.01□□□□□ -0.17
USF1P22415 AC019103.1-201ENST00000503095 272 ntTSL 3 BASIC14.01□□□□□ -0.17
USF1P22415 TERF1P3-201ENST00000505638 1227 ntBASIC14.01□□□□□ -0.17
USF1P22415 CCDC112-205ENST00000506442 2145 ntAPPRIS ALT2 TSL 2 BASIC14.01□□□□□ -0.17
USF1P22415 AC106897.1-201ENST00000512874 394 ntTSL 2 BASIC14.01□□□□□ -0.17
USF1P22415 BEST1-205ENST00000526988 1263 ntTSL 2 BASIC14.01□□□□□ -0.17
USF1P22415 AC091167.2-201ENST00000579581 588 ntBASIC14.01□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 39.4 ms