Protein–RNA interactions for Protein: P06400

RB1, Retinoblastoma-associated protein, humanhuman

Predictions only

Length 928 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RB1P06400 PCBP3-204ENST00000400309 1986 ntAPPRIS ALT2 TSL 5 BASIC17.33■□□□□ 0.36
RB1P06400 SMTNL2-201ENST00000338859 1919 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
RB1P06400 RHBDF1P1-201ENST00000427504 1941 ntBASIC17.33■□□□□ 0.36
RB1P06400 VASH1-201ENST00000167106 5728 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
RB1P06400 VIPR1-201ENST00000325123 2773 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
RB1P06400 ZDHHC20-202ENST00000382466 5338 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.36
RB1P06400 DRG1-201ENST00000331457 1746 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
RB1P06400 NFIC-203ENST00000443272 1716 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.36
RB1P06400 APBB2-204ENST00000502841 1681 ntTSL 2 BASIC17.32■□□□□ 0.36
RB1P06400 BRINP1-202ENST00000373964 1641 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
RB1P06400 AC018470.1-201ENST00000624790 3129 ntBASIC17.32■□□□□ 0.36
RB1P06400 CERCAM-202ENST00000372842 5201 ntAPPRIS ALT2 TSL 5 BASIC17.32■□□□□ 0.36
RB1P06400 ACSS2-201ENST00000253382 2925 ntTSL 2 BASIC17.32■□□□□ 0.36
RB1P06400 NRBP1-203ENST00000379852 2163 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
RB1P06400 ITPK1-202ENST00000354313 2803 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
RB1P06400 C1orf56-201ENST00000368926 2096 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
RB1P06400 IFFO1-204ENST00000396840 2677 ntAPPRIS ALT1 TSL 5 BASIC17.32■□□□□ 0.36
RB1P06400 BAG3-201ENST00000369085 2571 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
RB1P06400 ACYP2-203ENST00000406041 1913 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
RB1P06400 SPAG7-201ENST00000206020 1058 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
RB1P06400 VAMP4-202ENST00000367740 1193 ntAPPRIS ALT1 TSL 1 (best) BASIC17.32■□□□□ 0.36
RB1P06400 TAGLN-202ENST00000392951 928 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
RB1P06400 FAM25G-201ENST00000452267 345 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
RB1P06400 AC084864.1-201ENST00000496217 305 ntTSL 3 BASIC17.32■□□□□ 0.36
RB1P06400 AL163974.1-201ENST00000554540 466 ntTSL 5 BASIC17.32■□□□□ 0.36
RB1P06400 BTNL10-201ENST00000595971 695 ntBASIC17.32■□□□□ 0.36
RB1P06400 LARGE2-201ENST00000325468 2522 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
RB1P06400 GYG1-201ENST00000296048 1890 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
RB1P06400 NAP1L5-201ENST00000323061 2321 ntAPPRIS P1 BASIC17.32■□□□□ 0.36
RB1P06400 SCNN1A-205ENST00000396966 2336 ntTSL 3 BASIC17.32■□□□□ 0.36
RB1P06400 MAP4K4-202ENST00000324219 7526 ntTSL 5 BASIC17.32■□□□□ 0.36
RB1P06400 TONSL-203ENST00000613741 1713 ntTSL 5 BASIC17.32■□□□□ 0.36
RB1P06400 AL512625.3-203ENST00000445604 1602 ntTSL 5 BASIC17.32■□□□□ 0.36
RB1P06400 RASA2-202ENST00000452898 2562 ntAPPRIS ALT2 TSL 5 BASIC17.32■□□□□ 0.36
RB1P06400 KCNQ2-213ENST00000626839 9213 ntAPPRIS ALT1 TSL 1 (best) BASIC17.32■□□□□ 0.36
RB1P06400 TM6SF2-201ENST00000389363 1505 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
RB1P06400 REXO1L6P-201ENST00000603433 1515 ntBASIC17.31■□□□□ 0.36
RB1P06400 SFRP2-201ENST00000274063 2032 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
RB1P06400 SPATC1-201ENST00000377470 2007 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
RB1P06400 LTBP4-203ENST00000308370 4948 ntAPPRIS P4 TSL 1 (best) BASIC17.31■□□□□ 0.36
RB1P06400 CNST-202ENST00000366512 2422 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
RB1P06400 MTA1-207ENST00000435036 2888 ntTSL 5 BASIC17.31■□□□□ 0.36
RB1P06400 WDR45-201ENST00000322995 1444 ntTSL 5 BASIC17.31■□□□□ 0.36
RB1P06400 RNLS-201ENST00000331772 1447 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
RB1P06400 PPP1R27-202ENST00000570394 1443 ntTSL 2 BASIC17.31■□□□□ 0.36
RB1P06400 ZNF385B-204ENST00000410066 3288 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
RB1P06400 CYP2W1-201ENST00000308919 2304 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
RB1P06400 B3GNT2-201ENST00000301998 2763 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
RB1P06400 CCDC3-201ENST00000378825 2731 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
RB1P06400 FAM213B-202ENST00000378425 2665 ntAPPRIS ALT2 TSL 2 BASIC17.31■□□□□ 0.36
RB1P06400 BAZ1A-203ENST00000382422 5775 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
RB1P06400 PANK2-209ENST00000621507 1763 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
RB1P06400 LBHD1-201ENST00000354588 1320 ntAPPRIS P2 TSL 1 (best) BASIC17.31■□□□□ 0.36
RB1P06400 KCNV2-201ENST00000382082 2186 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
RB1P06400 GNE-204ENST00000539208 2190 ntTSL 2 BASIC17.31■□□□□ 0.36
RB1P06400 PPOX-202ENST00000367999 1740 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
RB1P06400 ACSL6-201ENST00000296869 2561 ntTSL 5 BASIC17.31■□□□□ 0.36
RB1P06400 FAM86MP-201ENST00000340703 885 ntBASIC17.31■□□□□ 0.36
RB1P06400 TNNI1-203ENST00000367312 1100 ntAPPRIS P2 TSL 5 BASIC17.31■□□□□ 0.36
RB1P06400 TPM1-207ENST00000403994 1049 ntAPPRIS ALT1 TSL 1 (best) BASIC17.31■□□□□ 0.36
RB1P06400 AC099754.1-201ENST00000435884 454 ntTSL 3 BASIC17.31■□□□□ 0.36
RB1P06400 AC245100.3-201ENST00000441281 285 ntBASIC17.31■□□□□ 0.36
RB1P06400 C19orf24-202ENST00000469144 668 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
RB1P06400 AJ271736.1-201ENST00000483543 773 ntTSL 5 BASIC17.31■□□□□ 0.36
RB1P06400 AC007406.4-201ENST00000539568 765 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
RB1P06400 AC092552.1-201ENST00000547243 906 ntBASIC17.31■□□□□ 0.36
RB1P06400 AC034102.5-201ENST00000548731 540 ntTSL 4 BASIC17.31■□□□□ 0.36
RB1P06400 DPF3-210ENST00000556509 1138 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
RB1P06400 AC105020.3-201ENST00000566036 560 ntTSL 4 BASIC17.31■□□□□ 0.36
RB1P06400 AC009133.2-201ENST00000566537 547 ntTSL 4 BASIC17.31■□□□□ 0.36
RB1P06400 AC079336.2-201ENST00000578408 927 ntTSL 3 BASIC17.31■□□□□ 0.36
RB1P06400 PIGL-212ENST00000581006 554 ntTSL 4 BASIC17.31■□□□□ 0.36
RB1P06400 H2BFM-203ENST00000598335 465 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
RB1P06400 COPS3-212ENST00000539941 1699 ntTSL 2 BASIC17.31■□□□□ 0.36
RB1P06400 C1QTNF6-202ENST00000397110 1647 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
RB1P06400 ZNF57-201ENST00000306908 2003 ntAPPRIS P2 TSL 1 (best) BASIC17.31■□□□□ 0.36
RB1P06400 ZNF57-205ENST00000614108 2002 ntAPPRIS ALT2 TSL 5 BASIC17.31■□□□□ 0.36
RB1P06400 AEBP2-201ENST00000266508 3620 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
RB1P06400 SLC25A43-201ENST00000217909 2783 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
RB1P06400 CD9-203ENST00000382518 1556 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
RB1P06400 HNF1A-202ENST00000400024 2337 ntTSL 2 BASIC17.31■□□□□ 0.36
RB1P06400 INPP5J-213ENST00000620191 2306 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
RB1P06400 AC104809.2-201ENST00000418218 2274 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
RB1P06400 NOTCH3-201ENST00000263388 8666 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
RB1P06400 OLFM1-201ENST00000252854 2591 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
RB1P06400 PIP5K1C-205ENST00000589578 2933 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
RB1P06400 CD72-211ENST00000612238 1424 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
RB1P06400 MBOAT1-201ENST00000324607 1794 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
RB1P06400 ABHD14B-206ENST00000483233 2056 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
RB1P06400 HNF1A-212ENST00000544413 2014 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
RB1P06400 UBL3-201ENST00000380680 4384 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
RB1P06400 CCNJL-203ENST00000393977 3320 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
RB1P06400 HS3ST2-201ENST00000261374 2314 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
RB1P06400 RABEPK-201ENST00000259460 1313 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
RB1P06400 HACD3-202ENST00000442729 1332 ntTSL 2 BASIC17.3■□□□□ 0.36
RB1P06400 EIF3K-203ENST00000545173 1327 ntAPPRIS ALT1 TSL 2 BASIC17.3■□□□□ 0.36
RB1P06400 IGHA1-202ENST00000641837 1310 ntAPPRIS P5 BASIC17.3■□□□□ 0.36
RB1P06400 SCARF1-202ENST00000348987 2619 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
RB1P06400 ZBTB33-201ENST00000326624 5211 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
RB1P06400 SIRT6-202ENST00000337491 1641 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 58.8 ms