Protein–RNA interactions for Protein: O95398

RAPGEF3, Rap guanine nucleotide exchange factor 3, humanhuman

Predictions only

Length 923 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RAPGEF3O95398 NFIB-208ENST00000397581 3318 ntTSL 5 BASIC24.31■■□□□ 1.48
RAPGEF3O95398 GRM5-202ENST00000305447 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC24.31■■□□□ 1.48
RAPGEF3O95398 ABCG4-206ENST00000622721 2553 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
RAPGEF3O95398 FAM19A4-201ENST00000295569 2292 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
RAPGEF3O95398 GCDH-201ENST00000222214 1956 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
RAPGEF3O95398 WAS-201ENST00000376701 1849 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
RAPGEF3O95398 GPS1-228ENST00000624957 1825 ntAPPRIS ALT1 TSL 5 BASIC24.31■■□□□ 1.48
RAPGEF3O95398 GMDS-AS1-201ENST00000456943 2308 ntTSL 2 BASIC24.3■■□□□ 1.48
RAPGEF3O95398 KAT8-201ENST00000219797 1525 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
RAPGEF3O95398 KLK10-202ENST00000358789 1508 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
RAPGEF3O95398 CCDC17-202ENST00000421127 2216 ntAPPRIS ALT2 TSL 2 BASIC24.3■■□□□ 1.48
RAPGEF3O95398 CHRFAM7A-202ENST00000397827 2794 ntTSL 5 BASIC24.3■■□□□ 1.48
RAPGEF3O95398 KRT6C-201ENST00000252250 2289 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
RAPGEF3O95398 KRT6B-201ENST00000252252 2282 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
RAPGEF3O95398 AL583835.2-202ENST00000421363 1104 ntTSL 1 (best) BASIC24.3■■□□□ 1.48
RAPGEF3O95398 LARGE-AS1-202ENST00000424291 1065 ntTSL 1 (best) BASIC24.3■■□□□ 1.48
RAPGEF3O95398 SPATA24-205ENST00000509959 641 ntTSL 5 BASIC24.3■■□□□ 1.48
RAPGEF3O95398 ZNF7-206ENST00000528130 1134 ntTSL 5 BASIC24.3■■□□□ 1.48
RAPGEF3O95398 TAPBPL-205ENST00000544021 772 ntTSL 3 BASIC24.3■■□□□ 1.48
RAPGEF3O95398 VASH1-AS1-201ENST00000554058 871 ntTSL 3 BASIC24.3■■□□□ 1.48
RAPGEF3O95398 AC120045.2-201ENST00000567334 178 ntBASIC24.3■■□□□ 1.48
RAPGEF3O95398 TNNT1-212ENST00000588981 1163 ntAPPRIS P3 TSL 1 (best) BASIC24.3■■□□□ 1.48
RAPGEF3O95398 KC6-205ENST00000599934 556 ntTSL 4 BASIC24.3■■□□□ 1.48
RAPGEF3O95398 HCG18-245ENST00000602550 559 ntTSL 4 BASIC24.3■■□□□ 1.48
RAPGEF3O95398 AC244452.3-201ENST00000636814 210 ntBASIC24.3■■□□□ 1.48
RAPGEF3O95398 AL512625.3-203ENST00000445604 1602 ntTSL 5 BASIC24.3■■□□□ 1.48
RAPGEF3O95398 ITGB2-AS1-202ENST00000441379 2282 ntTSL 1 (best) BASIC24.3■■□□□ 1.48
RAPGEF3O95398 LIN54-209ENST00000510557 2257 ntTSL 2 BASIC24.3■■□□□ 1.48
RAPGEF3O95398 PBK-201ENST00000301905 2118 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
RAPGEF3O95398 PDE6B-202ENST00000429163 2120 ntTSL 2 BASIC24.29■■□□□ 1.48
RAPGEF3O95398 GPAA1P2-202ENST00000606848 1787 ntBASIC24.29■■□□□ 1.48
RAPGEF3O95398 TMEM222-211ENST00000611517 1613 ntAPPRIS P2 TSL 1 (best) BASIC24.29■■□□□ 1.48
RAPGEF3O95398 CT62-201ENST00000449977 1825 ntAPPRIS P2 TSL 1 (best) BASIC24.29■■□□□ 1.48
RAPGEF3O95398 AC092068.3-201ENST00000587894 2016 ntBASIC24.29■■□□□ 1.48
RAPGEF3O95398 MOAP1-201ENST00000298894 2441 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
RAPGEF3O95398 MAPRE1-201ENST00000375571 2623 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
RAPGEF3O95398 BLOC1S3-201ENST00000433642 2601 ntAPPRIS P1 TSL 2 BASIC24.29■■□□□ 1.48
RAPGEF3O95398 AC091046.1-201ENST00000331871 207 ntBASIC24.29■■□□□ 1.48
RAPGEF3O95398 CTNNBIP1-202ENST00000377258 852 ntAPPRIS P1 TSL 3 BASIC24.29■■□□□ 1.48
RAPGEF3O95398 AC012506.3-201ENST00000415245 892 ntTSL 3 BASIC24.29■■□□□ 1.48
RAPGEF3O95398 U82695.1-202ENST00000428676 700 ntTSL 2 BASIC24.29■■□□□ 1.48
RAPGEF3O95398 AL929472.3-201ENST00000433474 700 ntTSL 5 BASIC24.29■■□□□ 1.48
RAPGEF3O95398 AC012531.3-201ENST00000513209 777 ntAPPRIS P1 TSL 3 BASIC24.29■■□□□ 1.48
RAPGEF3O95398 ADM-202ENST00000524948 584 ntTSL 2 BASIC24.29■■□□□ 1.48
RAPGEF3O95398 LINC01089-209ENST00000542933 1220 ntTSL 3 BASIC24.29■■□□□ 1.48
RAPGEF3O95398 PSENEN-203ENST00000591949 833 ntTSL 2 BASIC24.29■■□□□ 1.48
RAPGEF3O95398 STXBP2-221ENST00000602355 716 ntTSL 2 BASIC24.29■■□□□ 1.48
RAPGEF3O95398 AC005695.3-201ENST00000614522 232 ntBASIC24.29■■□□□ 1.48
RAPGEF3O95398 RBM8A-206ENST00000632555 751 ntAPPRIS P1 TSL 3 BASIC24.29■■□□□ 1.48
RAPGEF3O95398 LINC00221-201ENST00000603633 1656 ntTSL 2 BASIC24.29■■□□□ 1.48
RAPGEF3O95398 SLC6A8-204ENST00000430077 1892 ntTSL 2 BASIC24.29■■□□□ 1.48
RAPGEF3O95398 ESR2-209ENST00000555278 1883 ntTSL 1 (best) BASIC24.29■■□□□ 1.48
RAPGEF3O95398 SDK1-201ENST00000389531 7606 ntAPPRIS ALT2 TSL 5 BASIC24.29■■□□□ 1.48
RAPGEF3O95398 AL139300.1-201ENST00000472726 2505 ntAPPRIS P1 TSL 2 BASIC24.29■■□□□ 1.48
RAPGEF3O95398 NPEPL1-204ENST00000525967 1917 ntTSL 1 (best) BASIC24.29■■□□□ 1.48
RAPGEF3O95398 TRIM17-205ENST00000456946 1731 ntTSL 1 (best) BASIC24.29■■□□□ 1.48
RAPGEF3O95398 AC003002.1-202ENST00000596755 1743 ntAPPRIS P1 BASIC24.29■■□□□ 1.48
RAPGEF3O95398 DUSP13-208ENST00000478873 1335 ntTSL 5 BASIC24.29■■□□□ 1.48
RAPGEF3O95398 FBRS-202ENST00000356166 5200 ntTSL 5 BASIC24.29■■□□□ 1.48
RAPGEF3O95398 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
RAPGEF3O95398 ARRB2-204ENST00000412477 1779 ntTSL 2 BASIC24.29■■□□□ 1.48
RAPGEF3O95398 CEP55-201ENST00000371485 2638 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
RAPGEF3O95398 CD9-203ENST00000382518 1556 ntAPPRIS P1 TSL 5 BASIC24.29■■□□□ 1.48
RAPGEF3O95398 KMT5B-201ENST00000304363 5837 ntAPPRIS P1 TSL 5 BASIC24.29■■□□□ 1.48
RAPGEF3O95398 SNX18-203ENST00000381410 5218 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
RAPGEF3O95398 SLC26A5-202ENST00000339444 2474 ntTSL 1 (best) BASIC24.28■■□□□ 1.48
RAPGEF3O95398 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
RAPGEF3O95398 UVSSA-207ENST00000511216 2927 ntAPPRIS P2 TSL 1 (best) BASIC24.28■■□□□ 1.48
RAPGEF3O95398 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
RAPGEF3O95398 CCDC120-203ENST00000536628 2381 ntAPPRIS ALT2 TSL 2 BASIC24.28■■□□□ 1.48
RAPGEF3O95398 SHISA5-220ENST00000619810 2385 ntTSL 2 BASIC24.28■■□□□ 1.48
RAPGEF3O95398 KLHDC3-203ENST00000332245 1494 ntTSL 2 BASIC24.28■■□□□ 1.48
RAPGEF3O95398 KRTAP1-4-201ENST00000377747 408 ntAPPRIS P1 BASIC24.28■■□□□ 1.48
RAPGEF3O95398 C1QBPP1-201ENST00000400117 770 ntBASIC24.28■■□□□ 1.48
RAPGEF3O95398 CNN2P8-201ENST00000421872 913 ntBASIC24.28■■□□□ 1.48
RAPGEF3O95398 FNTAP2-201ENST00000430308 634 ntBASIC24.28■■□□□ 1.48
RAPGEF3O95398 LINC01067-201ENST00000432575 664 ntTSL 3 BASIC24.28■■□□□ 1.48
RAPGEF3O95398 LIMS3-201ENST00000437679 1220 ntTSL 1 (best) BASIC24.28■■□□□ 1.48
RAPGEF3O95398 AC016683.1-202ENST00000438409 583 ntTSL 4 BASIC24.28■■□□□ 1.48
RAPGEF3O95398 BMS1P17-203ENST00000444357 552 ntTSL 4 BASIC24.28■■□□□ 1.48
RAPGEF3O95398 BX324167.1-201ENST00000451118 805 ntTSL 5 BASIC24.28■■□□□ 1.48
RAPGEF3O95398 HIST2H2BC-201ENST00000498492 580 ntBASIC24.28■■□□□ 1.48
RAPGEF3O95398 AC008736.2-201ENST00000587554 516 ntTSL 2 BASIC24.28■■□□□ 1.48
RAPGEF3O95398 SPIB-207ENST00000597855 564 ntTSL 4 BASIC24.28■■□□□ 1.48
RAPGEF3O95398 BMS1P22-203ENST00000609679 552 ntTSL 4 BASIC24.28■■□□□ 1.48
RAPGEF3O95398 AL358473.2-201ENST00000610411 556 ntTSL 4 BASIC24.28■■□□□ 1.48
RAPGEF3O95398 FP565260.5-201ENST00000623188 479 ntTSL 3 BASIC24.28■■□□□ 1.48
RAPGEF3O95398 PCSK6-221ENST00000632686 1210 ntTSL 5 BASIC24.28■■□□□ 1.48
RAPGEF3O95398 TMEM161A-201ENST00000162044 1820 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
RAPGEF3O95398 GPR137-212ENST00000539851 1843 ntTSL 2 BASIC24.28■■□□□ 1.48
RAPGEF3O95398 CAP2-208ENST00000611958 2686 ntTSL 2 BASIC24.28■■□□□ 1.48
RAPGEF3O95398 B4GALT4-216ENST00000483209 2494 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
RAPGEF3O95398 TNRC18-202ENST00000399434 1459 ntTSL 2 BASIC24.27■■□□□ 1.48
RAPGEF3O95398 C17orf100-201ENST00000542475 1756 ntAPPRIS P1 BASIC24.27■■□□□ 1.48
RAPGEF3O95398 ZNF668-208ENST00000538906 2865 ntAPPRIS P1 TSL 2 BASIC24.27■■□□□ 1.48
RAPGEF3O95398 FHL2-205ENST00000393353 1531 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
RAPGEF3O95398 KRT15-203ENST00000393976 2394 ntAPPRIS P1 TSL 5 BASIC24.27■■□□□ 1.48
RAPGEF3O95398 NEU2-201ENST00000233840 1143 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
RAPGEF3O95398 NUS1P3-201ENST00000423502 862 ntBASIC24.27■■□□□ 1.48
RAPGEF3O95398 AL157392.3-216ENST00000437446 462 ntTSL 3 BASIC24.27■■□□□ 1.48
Retrieved 100 of 98,524 protein–RNA pairs in 29 ms