Protein–RNA interactions for Protein: O95025

SEMA3D, Semaphorin-3D, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3DO95025 EIF2B4-212ENST00000622434 1771 ntTSL 5 BASIC15.87■□□□□ 0.13
SEMA3DO95025 FRS2-206ENST00000549921 1952 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
SEMA3DO95025 CDKN1A-201ENST00000244741 2180 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
SEMA3DO95025 CYP46A1-201ENST00000261835 2181 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
SEMA3DO95025 CDKN2B-AS1-208ENST00000580576 2175 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
SEMA3DO95025 CTSB-228ENST00000533455 2009 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
SEMA3DO95025 SHISA6-203ENST00000432116 7518 ntAPPRIS ALT2 TSL 1 (best) BASIC15.87■□□□□ 0.13
SEMA3DO95025 HELZ2-202ENST00000427522 7827 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
SEMA3DO95025 ISCA2-201ENST00000298818 851 ntTSL 5 BASIC15.87■□□□□ 0.13
SEMA3DO95025 TSPY2-201ENST00000320701 1161 ntAPPRIS P5 TSL 1 (best) BASIC15.87■□□□□ 0.13
SEMA3DO95025 TSPY2-203ENST00000429039 779 ntAPPRIS ALT2 TSL 2 BASIC15.87■□□□□ 0.13
SEMA3DO95025 FDX1P1-201ENST00000449115 551 ntBASIC15.87■□□□□ 0.13
SEMA3DO95025 CCND3-213ENST00000510503 1257 ntTSL 3 BASIC15.87■□□□□ 0.13
SEMA3DO95025 CYB561D1-208ENST00000528785 1271 ntAPPRIS ALT1 TSL 5 BASIC15.87■□□□□ 0.13
SEMA3DO95025 LDLRAD2-203ENST00000543870 1180 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
SEMA3DO95025 ADAM10-217ENST00000561288 583 ntTSL 3 BASIC15.87■□□□□ 0.13
SEMA3DO95025 COQ7-208ENST00000568985 714 ntAPPRIS P3 TSL 2 BASIC15.87■□□□□ 0.13
SEMA3DO95025 AC002398.2-201ENST00000587767 660 ntTSL 5 BASIC15.87■□□□□ 0.13
SEMA3DO95025 NUTM2B-AS1-211ENST00000601369 1233 ntTSL 2 BASIC15.87■□□□□ 0.13
SEMA3DO95025 CLEC11A-203ENST00000617718 1128 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
SEMA3DO95025 AC010507.1-201ENST00000633895 436 ntBASIC15.87■□□□□ 0.13
SEMA3DO95025 AC087645.4-201ENST00000638890 792 ntTSL 5 BASIC15.87■□□□□ 0.13
SEMA3DO95025 DNAAF2-202ENST00000406043 2819 ntAPPRIS ALT2 TSL 1 (best) BASIC15.87■□□□□ 0.13
SEMA3DO95025 DAB2IP-205ENST00000408936 6784 ntAPPRIS ALT2 TSL 5 BASIC15.87■□□□□ 0.13
SEMA3DO95025 F7-201ENST00000346342 2409 ntAPPRIS ALT2 TSL 1 (best) BASIC15.87■□□□□ 0.13
SEMA3DO95025 PANK4-201ENST00000378466 2677 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
SEMA3DO95025 TRPC4AP-202ENST00000451813 3138 ntTSL 2 BASIC15.87■□□□□ 0.13
SEMA3DO95025 ZBTB46-201ENST00000245663 5185 ntAPPRIS P1 TSL 5 BASIC15.87■□□□□ 0.13
SEMA3DO95025 MTHFR-217ENST00000641820 1569 ntBASIC15.87■□□□□ 0.13
SEMA3DO95025 LY6K-205ENST00000522591 2724 ntAPPRIS ALT2 TSL 2 BASIC15.87■□□□□ 0.13
SEMA3DO95025 HAGH-202ENST00000397356 2984 ntAPPRIS P3 TSL 1 (best) BASIC15.87■□□□□ 0.13
SEMA3DO95025 CLDN6-201ENST00000328796 1369 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
SEMA3DO95025 SHISA6-204ENST00000441885 7575 ntAPPRIS P3 TSL 5 BASIC15.87■□□□□ 0.13
SEMA3DO95025 SURF4-209ENST00000618229 3200 ntTSL 2 BASIC15.87■□□□□ 0.13
SEMA3DO95025 ATP6AP2-225ENST00000637482 1648 ntAPPRIS ALT2 TSL 5 BASIC15.86■□□□□ 0.13
SEMA3DO95025 PIGW-204ENST00000614443 2312 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
SEMA3DO95025 PHGDH-223ENST00000641597 2585 ntAPPRIS P1 BASIC15.86■□□□□ 0.13
SEMA3DO95025 RUNX2-204ENST00000371438 5698 ntAPPRIS P4 TSL 5 BASIC15.86■□□□□ 0.13
SEMA3DO95025 CCDC120-203ENST00000536628 2381 ntAPPRIS ALT2 TSL 2 BASIC15.86■□□□□ 0.13
SEMA3DO95025 EPN1-203ENST00000411543 2621 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
SEMA3DO95025 NFIX-210ENST00000588228 1692 ntTSL 2 BASIC15.86■□□□□ 0.13
SEMA3DO95025 RPL3L-201ENST00000268661 2182 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
SEMA3DO95025 CARS-203ENST00000397111 2685 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
SEMA3DO95025 PRKAG1-217ENST00000552212 1497 ntTSL 2 BASIC15.86■□□□□ 0.13
SEMA3DO95025 NUDT16P1-202ENST00000499077 2208 ntTSL 2 BASIC15.86■□□□□ 0.13
SEMA3DO95025 PHKG2-204ENST00000563588 5539 ntAPPRIS P2 TSL 1 (best) BASIC15.86■□□□□ 0.13
SEMA3DO95025 ZNF451-203ENST00000370706 5268 ntAPPRIS ALT2 TSL 1 (best) BASIC15.86■□□□□ 0.13
SEMA3DO95025 XRCC3-209ENST00000554913 2539 ntAPPRIS P1 TSL 2 BASIC15.86■□□□□ 0.13
SEMA3DO95025 EIPR1-202ENST00000398659 1795 ntTSL 5 BASIC15.86■□□□□ 0.13
SEMA3DO95025 DNAJB8-AS1-201ENST00000471626 1798 ntTSL 2 BASIC15.86■□□□□ 0.13
SEMA3DO95025 RPS5-202ENST00000596046 1520 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
SEMA3DO95025 SH3BP2-207ENST00000503393 9158 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
SEMA3DO95025 SERF1B-202ENST00000380751 703 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
SEMA3DO95025 CBX7-202ENST00000401405 784 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
SEMA3DO95025 SGO2-202ENST00000409203 1041 ntAPPRIS ALT2 TSL 1 (best) BASIC15.86■□□□□ 0.13
SEMA3DO95025 PMS2P4-201ENST00000412466 1052 ntBASIC15.86■□□□□ 0.13
SEMA3DO95025 CRCP-205ENST00000431089 942 ntTSL 2 BASIC15.86■□□□□ 0.13
SEMA3DO95025 TMEM205-202ENST00000447337 916 ntAPPRIS P1 TSL 2 BASIC15.86■□□□□ 0.13
SEMA3DO95025 POU5F1P6-201ENST00000466990 990 ntBASIC15.86■□□□□ 0.13
SEMA3DO95025 FLJ20021-201ENST00000527564 790 ntTSL 2 BASIC15.86■□□□□ 0.13
SEMA3DO95025 TMEM41B-203ENST00000527813 803 ntTSL 5 BASIC15.86■□□□□ 0.13
SEMA3DO95025 RPL28-209ENST00000560055 670 ntTSL 3 BASIC15.86■□□□□ 0.13
SEMA3DO95025 AC023355.1-201ENST00000560323 752 ntTSL 3 BASIC15.86■□□□□ 0.13
SEMA3DO95025 AL031055.1-201ENST00000606362 631 ntBASIC15.86■□□□□ 0.13
SEMA3DO95025 DEF8-228ENST00000610455 816 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
SEMA3DO95025 NRXN1-204ENST00000401669 5870 ntAPPRIS ALT1 TSL 5 BASIC15.86■□□□□ 0.13
SEMA3DO95025 KCNA5-201ENST00000252321 2800 ntAPPRIS P1 BASIC15.86■□□□□ 0.13
SEMA3DO95025 ANKS6-202ENST00000375019 2586 ntTSL 5 BASIC15.86■□□□□ 0.13
SEMA3DO95025 TAF1D-203ENST00000448108 2082 ntAPPRIS P1 TSL 5 BASIC15.86■□□□□ 0.13
SEMA3DO95025 HDAC11-214ENST00000446613 2875 ntTSL 5 BASIC15.86■□□□□ 0.13
SEMA3DO95025 PCGF3-213ENST00000620529 1899 ntBASIC15.86■□□□□ 0.13
SEMA3DO95025 DYSF-207ENST00000409762 6727 ntAPPRIS ALT2 TSL 1 (best) BASIC15.86■□□□□ 0.13
SEMA3DO95025 DYSF-211ENST00000429174 6739 ntAPPRIS ALT2 TSL 1 (best) BASIC15.86■□□□□ 0.13
SEMA3DO95025 FOXP1-218ENST00000498215 2400 ntAPPRIS P3 TSL 2 BASIC15.86■□□□□ 0.13
SEMA3DO95025 GPS1-202ENST00000320548 1949 ntTSL 2 BASIC15.86■□□□□ 0.13
SEMA3DO95025 TICAM2-201ENST00000427199 3049 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
SEMA3DO95025 IFT140-203ENST00000426508 5270 ntAPPRIS P1 TSL 5 BASIC15.86■□□□□ 0.13
SEMA3DO95025 NFATC4-201ENST00000250373 4749 ntAPPRIS P3 TSL 1 (best) BASIC15.86■□□□□ 0.13
SEMA3DO95025 ACP5-212ENST00000592828 1699 ntAPPRIS P1 TSL 5 BASIC15.86■□□□□ 0.13
SEMA3DO95025 UCKL1-203ENST00000369908 1954 ntAPPRIS P1 TSL 2 BASIC15.86■□□□□ 0.13
SEMA3DO95025 DCST1-201ENST00000295542 2279 ntAPPRIS P3 TSL 2 BASIC15.85■□□□□ 0.13
SEMA3DO95025 IQCC-202ENST00000537469 2252 ntAPPRIS ALT2 TSL 1 (best) BASIC15.85■□□□□ 0.13
SEMA3DO95025 SORT1-201ENST00000256637 7028 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
SEMA3DO95025 EGLN1-201ENST00000366641 7097 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
SEMA3DO95025 AFF2-204ENST00000370458 1488 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
SEMA3DO95025 NPM2-209ENST00000521157 1484 ntAPPRIS P2 TSL 5 BASIC15.85■□□□□ 0.13
SEMA3DO95025 KDM4B-203ENST00000536461 5027 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
SEMA3DO95025 TULP2-201ENST00000221399 1754 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
SEMA3DO95025 CHST14-201ENST00000306243 3574 ntAPPRIS P1 BASIC15.85■□□□□ 0.13
SEMA3DO95025 TMEM184A-201ENST00000297477 6276 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
SEMA3DO95025 ADAM8-205ENST00000485491 2441 ntTSL 2 BASIC15.85■□□□□ 0.13
SEMA3DO95025 FBXO28-201ENST00000366862 5451 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
SEMA3DO95025 SDCBP2-202ENST00000360779 1519 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
SEMA3DO95025 WDTC1-202ENST00000361771 4275 ntAPPRIS P3 TSL 1 (best) BASIC15.85■□□□□ 0.13
SEMA3DO95025 MELTF-201ENST00000296350 3963 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
SEMA3DO95025 RAB37-208ENST00000402449 1560 ntAPPRIS P3 TSL 2 BASIC15.85■□□□□ 0.13
SEMA3DO95025 PDXP-202ENST00000403251 1571 ntTSL 2 BASIC15.85■□□□□ 0.13
SEMA3DO95025 LINC00612-201ENST00000538094 2213 ntTSL 2 BASIC15.85■□□□□ 0.13
SEMA3DO95025 MRGPRD-201ENST00000309106 966 ntAPPRIS P1 BASIC15.85■□□□□ 0.13
SEMA3DO95025 ICOSLG-201ENST00000344330 1009 ntAPPRIS ALT2 TSL 1 (best) BASIC15.85■□□□□ 0.13
Retrieved 100 of 98,524 protein–RNA pairs in 50 ms