Protein–RNA interactions for Protein: H3BMG3

SMKR1, Small lysine-rich protein 1, humanhuman

Predictions only

Length 65 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMKR1H3BMG3 AC011840.1-202ENST00000436477 1351 ntTSL 2 BASIC12.15□□□□□ -0.46
SMKR1H3BMG3 TBCD-202ENST00000539345 3975 ntTSL 5 BASIC12.15□□□□□ -0.46
SMKR1H3BMG3 MED15-202ENST00000292733 3252 ntAPPRIS P3 TSL 1 (best) BASIC12.15□□□□□ -0.46
SMKR1H3BMG3 SNX18-202ENST00000343017 3140 ntBASIC12.15□□□□□ -0.47
SMKR1H3BMG3 RGN-202ENST00000352078 1611 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.47
SMKR1H3BMG3 GUCD1-203ENST00000404664 1606 ntTSL 2 BASIC12.15□□□□□ -0.47
SMKR1H3BMG3 HEMK1-201ENST00000232854 6087 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.47
SMKR1H3BMG3 AC004922.1-201ENST00000638617 2430 ntAPPRIS P1 TSL 5 BASIC12.15□□□□□ -0.47
SMKR1H3BMG3 FOS-208ENST00000555686 1496 ntTSL 2 BASIC12.14□□□□□ -0.47
SMKR1H3BMG3 AL353593.2-201ENST00000602529 1483 ntBASIC12.14□□□□□ -0.47
SMKR1H3BMG3 H2BFM-201ENST00000355016 1882 ntAPPRIS P1 TSL 2 BASIC12.14□□□□□ -0.47
SMKR1H3BMG3 ARFGAP2-202ENST00000426335 2937 ntTSL 2 BASIC12.14□□□□□ -0.47
SMKR1H3BMG3 GCK-203ENST00000395796 2539 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
SMKR1H3BMG3 ACOX3-202ENST00000413009 2374 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
SMKR1H3BMG3 MYO15B-237ENST00000642007 4893 ntBASIC12.14□□□□□ -0.47
SMKR1H3BMG3 CTCFL-215ENST00000608158 1984 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
SMKR1H3BMG3 SLC35E2B-203ENST00000611123 5948 ntAPPRIS P1 TSL 2 BASIC12.14□□□□□ -0.47
SMKR1H3BMG3 SLC22A15-202ENST00000369503 4720 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
SMKR1H3BMG3 GPSM1-202ENST00000354753 3533 ntAPPRIS ALT2 TSL 5 BASIC12.14□□□□□ -0.47
SMKR1H3BMG3 ENDOD1-201ENST00000278505 4687 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
SMKR1H3BMG3 RTEL1-201ENST00000318100 4676 ntTSL 2 BASIC12.14□□□□□ -0.47
SMKR1H3BMG3 PHTF1-201ENST00000357783 2747 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
SMKR1H3BMG3 MBOAT2-201ENST00000305997 7751 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
SMKR1H3BMG3 CLASP2-203ENST00000359576 7141 ntAPPRIS P5 TSL 5 BASIC12.14□□□□□ -0.47
SMKR1H3BMG3 CABP4-202ENST00000438189 1426 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
SMKR1H3BMG3 CCDC6-201ENST00000263102 5811 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
SMKR1H3BMG3 SCAP-215ENST00000545718 2950 ntTSL 5 BASIC12.14□□□□□ -0.47
SMKR1H3BMG3 PCNX1-202ENST00000439984 6988 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
SMKR1H3BMG3 TNFRSF11A-202ENST00000586569 8147 ntAPPRIS P3 TSL 1 (best) BASIC12.14□□□□□ -0.47
SMKR1H3BMG3 NFIX-210ENST00000588228 1692 ntTSL 2 BASIC12.14□□□□□ -0.47
SMKR1H3BMG3 RAD1-208ENST00000628399 1678 ntTSL 3 BASIC12.14□□□□□ -0.47
SMKR1H3BMG3 MAMLD1-203ENST00000370401 4854 ntAPPRIS P3 TSL 5 BASIC12.14□□□□□ -0.47
SMKR1H3BMG3 AC087164.1-202ENST00000583062 2158 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
SMKR1H3BMG3 RPA2-202ENST00000373909 1162 ntTSL 3 BASIC12.14□□□□□ -0.47
SMKR1H3BMG3 CRAT-202ENST00000393384 973 ntTSL 2 BASIC12.14□□□□□ -0.47
SMKR1H3BMG3 FAM220CP-201ENST00000395253 831 ntBASIC12.14□□□□□ -0.47
SMKR1H3BMG3 KRTAP5-10-201ENST00000398531 1176 ntAPPRIS P1 BASIC12.14□□□□□ -0.47
SMKR1H3BMG3 NKTR-203ENST00000442970 646 ntTSL 2 BASIC12.14□□□□□ -0.47
SMKR1H3BMG3 TSPY15P-201ENST00000457163 923 ntBASIC12.14□□□□□ -0.47
SMKR1H3BMG3 AL359075.1-203ENST00000462729 1002 ntBASIC12.14□□□□□ -0.47
SMKR1H3BMG3 AL449423.1-201ENST00000578935 435 ntTSL 3 BASIC12.14□□□□□ -0.47
SMKR1H3BMG3 AC011511.2-201ENST00000592893 918 ntTSL 3 BASIC12.14□□□□□ -0.47
SMKR1H3BMG3 AL390719.2-201ENST00000606993 987 ntBASIC12.14□□□□□ -0.47
SMKR1H3BMG3 NFIB-212ENST00000622520 1274 ntTSL 5 BASIC12.14□□□□□ -0.47
SMKR1H3BMG3 HAPLN3-204ENST00000562889 1547 ntTSL 5 BASIC12.14□□□□□ -0.47
SMKR1H3BMG3 TDRP-205ENST00000613071 3421 ntAPPRIS P1 TSL 3 BASIC12.14□□□□□ -0.47
SMKR1H3BMG3 TTC29-205ENST00000504425 1777 ntAPPRIS ALT2 TSL 5 BASIC12.14□□□□□ -0.47
SMKR1H3BMG3 AC022400.6-201ENST00000603027 5818 ntAPPRIS P5 TSL 2 BASIC12.14□□□□□ -0.47
SMKR1H3BMG3 TBC1D17-202ENST00000535102 2025 ntTSL 2 BASIC12.14□□□□□ -0.47
SMKR1H3BMG3 SNX5-202ENST00000377768 2288 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
SMKR1H3BMG3 ALDH3A2-221ENST00000581518 2785 ntAPPRIS ALT1 TSL 5 BASIC12.14□□□□□ -0.47
SMKR1H3BMG3 SLC20A1-201ENST00000272542 3381 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
SMKR1H3BMG3 TMEM139-201ENST00000359333 2383 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
SMKR1H3BMG3 COL11A2-202ENST00000361917 6104 ntAPPRIS ALT2 TSL 5 BASIC12.14□□□□□ -0.47
SMKR1H3BMG3 LINC02447-202ENST00000501888 2146 ntBASIC12.14□□□□□ -0.47
SMKR1H3BMG3 ITPRIPL2-201ENST00000381440 7247 ntAPPRIS P1 BASIC12.14□□□□□ -0.47
SMKR1H3BMG3 KREMEN1-201ENST00000327813 2719 ntAPPRIS P3 TSL 2 BASIC12.14□□□□□ -0.47
SMKR1H3BMG3 CD83-201ENST00000379153 2471 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
SMKR1H3BMG3 POFUT2-214ENST00000615172 2472 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
SMKR1H3BMG3 ACE-203ENST00000413513 2237 ntTSL 2 BASIC12.14□□□□□ -0.47
SMKR1H3BMG3 SEPT8-208ENST00000378721 1723 ntTSL 5 BASIC12.14□□□□□ -0.47
SMKR1H3BMG3 CDC14C-201ENST00000428251 1719 ntBASIC12.14□□□□□ -0.47
SMKR1H3BMG3 MBD1-224ENST00000591416 4905 ntAPPRIS P3 TSL 5 BASIC12.14□□□□□ -0.47
SMKR1H3BMG3 POLD4-205ENST00000529704 1486 ntTSL 2 BASIC12.14□□□□□ -0.47
SMKR1H3BMG3 ADAMTS14-202ENST00000373208 5269 ntAPPRIS P4 TSL 2 BASIC12.14□□□□□ -0.47
SMKR1H3BMG3 NF2-205ENST00000361452 5884 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
SMKR1H3BMG3 THNSL2-202ENST00000343544 2052 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
SMKR1H3BMG3 SEH1L-202ENST00000399892 1846 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
SMKR1H3BMG3 AC132938.5-201ENST00000624980 1813 ntBASIC12.14□□□□□ -0.47
SMKR1H3BMG3 FUT2-201ENST00000391876 1593 ntAPPRIS P1 TSL 2 BASIC12.13□□□□□ -0.47
SMKR1H3BMG3 TBL2-205ENST00000432538 1573 ntTSL 2 BASIC12.13□□□□□ -0.47
SMKR1H3BMG3 PRRT2-214ENST00000637064 2153 ntAPPRIS P1 TSL 5 BASIC12.13□□□□□ -0.47
SMKR1H3BMG3 SHISA5-209ENST00000443308 1933 ntTSL 2 BASIC12.13□□□□□ -0.47
SMKR1H3BMG3 FBXL12-208ENST00000589626 1920 ntTSL 2 BASIC12.13□□□□□ -0.47
SMKR1H3BMG3 CAMSAP3-202ENST00000446248 4179 ntAPPRIS ALT2 TSL 1 (best) BASIC12.13□□□□□ -0.47
SMKR1H3BMG3 SPSB3-201ENST00000301717 1449 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
SMKR1H3BMG3 HARS-203ENST00000431330 1774 ntTSL 2 BASIC12.13□□□□□ -0.47
SMKR1H3BMG3 GJB6-202ENST00000356192 2131 ntAPPRIS P1 TSL 2 BASIC12.13□□□□□ -0.47
SMKR1H3BMG3 RASGRF2-206ENST00000638442 2842 ntTSL 5 BASIC12.13□□□□□ -0.47
SMKR1H3BMG3 ADCY2-201ENST00000338316 6575 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
SMKR1H3BMG3 SIRT6-201ENST00000305232 1506 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
SMKR1H3BMG3 TRAF6-201ENST00000348124 2558 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
SMKR1H3BMG3 TYSND1-202ENST00000335494 3397 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
SMKR1H3BMG3 AC006277.1-201ENST00000624348 1610 ntBASIC12.13□□□□□ -0.47
SMKR1H3BMG3 SCGB3A1-201ENST00000292641 521 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
SMKR1H3BMG3 CD320-201ENST00000301458 1250 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
SMKR1H3BMG3 LCE4A-202ENST00000368777 672 ntAPPRIS P1 TSL 2 BASIC12.13□□□□□ -0.47
SMKR1H3BMG3 MIR662-201ENST00000384847 95 ntBASIC12.13□□□□□ -0.47
SMKR1H3BMG3 IL15RA-208ENST00000397251 1046 ntAPPRIS ALT2 TSL 1 (best) BASIC12.13□□□□□ -0.47
SMKR1H3BMG3 SAPCD2-201ENST00000409687 3848 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
SMKR1H3BMG3 MYD88-206ENST00000443433 914 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
SMKR1H3BMG3 PRKCB-209ENST00000498058 480 ntTSL 3 BASIC12.13□□□□□ -0.47
SMKR1H3BMG3 ANK1-211ENST00000522231 1060 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
SMKR1H3BMG3 ANK1-212ENST00000522543 1160 ntTSL 2 BASIC12.13□□□□□ -0.47
SMKR1H3BMG3 DYNLL1-205ENST00000548342 662 ntAPPRIS P1 TSL 2 BASIC12.13□□□□□ -0.47
SMKR1H3BMG3 AL441883.1-201ENST00000566170 1045 ntBASIC12.13□□□□□ -0.47
SMKR1H3BMG3 DUX4-205ENST00000570263 768 ntAPPRIS ALT2 TSL 1 (best) BASIC12.13□□□□□ -0.47
SMKR1H3BMG3 SHBG-211ENST00000574539 938 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
SMKR1H3BMG3 NDUFV2-AS1-201ENST00000582375 770 ntTSL 2 BASIC12.13□□□□□ -0.47
SMKR1H3BMG3 AC005943.1-201ENST00000585937 1002 ntAPPRIS P1 TSL 3 BASIC12.13□□□□□ -0.47
Retrieved 100 of 98,524 protein–RNA pairs in 38.5 ms