Protein–RNA interactions for Protein: C9J1S8

TRIM49D1, Tripartite motif-containing protein 49D, humanhuman

Predictions only

Length 452 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM49D1C9J1S8 DRG2-201ENST00000225729 1964 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
TRIM49D1C9J1S8 HSFX1-201ENST00000370416 1963 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
TRIM49D1C9J1S8 ALOX15-205ENST00000574640 2422 ntTSL 2 BASIC16.6■□□□□ 0.25
TRIM49D1C9J1S8 ABCB8-211ENST00000477092 1596 ntTSL 5 BASIC16.6■□□□□ 0.25
TRIM49D1C9J1S8 PPP1R16B-201ENST00000299824 6251 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
TRIM49D1C9J1S8 LINC02447-202ENST00000501888 2146 ntBASIC16.6■□□□□ 0.25
TRIM49D1C9J1S8 ADAMTS18-201ENST00000282849 5913 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
TRIM49D1C9J1S8 ADCY1-202ENST00000432715 1693 ntTSL 2 BASIC16.6■□□□□ 0.25
TRIM49D1C9J1S8 GAS2L2-201ENST00000604063 2661 ntAPPRIS ALT2 TSL 5 BASIC16.6■□□□□ 0.25
TRIM49D1C9J1S8 MLEC-201ENST00000228506 6626 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
TRIM49D1C9J1S8 WDR45-239ENST00000634944 1745 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
TRIM49D1C9J1S8 AC126177.1-201ENST00000547829 2218 ntBASIC16.6■□□□□ 0.25
TRIM49D1C9J1S8 PRAL-201ENST00000624952 3286 ntBASIC16.6■□□□□ 0.25
TRIM49D1C9J1S8 ZFAND5-205ENST00000376962 2785 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
TRIM49D1C9J1S8 ATE1-209ENST00000543447 4826 ntTSL 2 BASIC16.6■□□□□ 0.25
TRIM49D1C9J1S8 CXCL12-204ENST00000395793 665 ntTSL 5 BASIC16.6■□□□□ 0.25
TRIM49D1C9J1S8 COPS8-203ENST00000409334 794 ntTSL 5 BASIC16.6■□□□□ 0.25
TRIM49D1C9J1S8 CYHR1-203ENST00000424149 1162 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
TRIM49D1C9J1S8 WDR53-204ENST00000433160 887 ntTSL 5 BASIC16.6■□□□□ 0.25
TRIM49D1C9J1S8 AP000347.1-209ENST00000437294 557 ntTSL 4 BASIC16.6■□□□□ 0.25
TRIM49D1C9J1S8 LINC02237-202ENST00000521904 477 ntTSL 3 BASIC16.6■□□□□ 0.25
TRIM49D1C9J1S8 MTDHP3-201ENST00000594186 672 ntBASIC16.6■□□□□ 0.25
TRIM49D1C9J1S8 TUBB4A-209ENST00000598006 565 ntTSL 2 BASIC16.6■□□□□ 0.25
TRIM49D1C9J1S8 AL732292.2-201ENST00000609649 430 ntBASIC16.6■□□□□ 0.25
TRIM49D1C9J1S8 AC010654.1-201ENST00000615722 808 ntBASIC16.6■□□□□ 0.25
TRIM49D1C9J1S8 SBDS-205ENST00000617799 953 ntAPPRIS ALT1 TSL 5 BASIC16.6■□□□□ 0.25
TRIM49D1C9J1S8 NXNL2-205ENST00000618633 739 ntTSL 5 BASIC16.6■□□□□ 0.25
TRIM49D1C9J1S8 MGEA5-203ENST00000370094 3314 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
TRIM49D1C9J1S8 COTL1-201ENST00000262428 1843 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
TRIM49D1C9J1S8 CAP2-202ENST00000378990 1812 ntTSL 2 BASIC16.6■□□□□ 0.25
TRIM49D1C9J1S8 MAGEA2-201ENST00000595583 1830 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
TRIM49D1C9J1S8 CD8A-201ENST00000283635 2873 ntAPPRIS P4 TSL 1 (best) BASIC16.6■□□□□ 0.25
TRIM49D1C9J1S8 ALDOA-201ENST00000338110 2384 ntAPPRIS P2 TSL 1 (best) BASIC16.6■□□□□ 0.25
TRIM49D1C9J1S8 FSD2-202ENST00000541889 2356 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
TRIM49D1C9J1S8 FOXO3-201ENST00000343882 7308 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
TRIM49D1C9J1S8 AP002360.1-202ENST00000530460 2462 ntAPPRIS ALT2 BASIC16.6■□□□□ 0.25
TRIM49D1C9J1S8 CACNA1G-202ENST00000354983 8138 ntAPPRIS ALT2 TSL 5 BASIC16.6■□□□□ 0.25
TRIM49D1C9J1S8 DNASE2-201ENST00000222219 1955 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
TRIM49D1C9J1S8 IRF3-202ENST00000377135 1442 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
TRIM49D1C9J1S8 SNTG2-202ENST00000407292 1436 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
TRIM49D1C9J1S8 MED26-201ENST00000263390 3174 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
TRIM49D1C9J1S8 PDXP-202ENST00000403251 1571 ntTSL 2 BASIC16.6■□□□□ 0.25
TRIM49D1C9J1S8 NSUN5-202ENST00000310326 1602 ntAPPRIS ALT2 TSL 2 BASIC16.59■□□□□ 0.25
TRIM49D1C9J1S8 ZNF7-207ENST00000528372 2905 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
TRIM49D1C9J1S8 TCF25-202ENST00000263347 2377 ntTSL 5 BASIC16.59■□□□□ 0.25
TRIM49D1C9J1S8 ARCN1-203ENST00000392859 1709 ntTSL 2 BASIC16.59■□□□□ 0.25
TRIM49D1C9J1S8 ATP2A3-206ENST00000397043 3197 ntAPPRIS ALT1 TSL 1 (best) BASIC16.59■□□□□ 0.25
TRIM49D1C9J1S8 CACNA2D2-203ENST00000423994 5329 ntAPPRIS ALT2 TSL 5 BASIC16.59■□□□□ 0.25
TRIM49D1C9J1S8 HHIP-202ENST00000434550 1770 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
TRIM49D1C9J1S8 AC112504.1-201ENST00000623415 1841 ntBASIC16.59■□□□□ 0.25
TRIM49D1C9J1S8 H2BFM-201ENST00000355016 1882 ntAPPRIS P1 TSL 2 BASIC16.59■□□□□ 0.25
TRIM49D1C9J1S8 SNX6-202ENST00000396526 3398 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
TRIM49D1C9J1S8 LINC00668-206ENST00000581725 1902 ntTSL 2 BASIC16.59■□□□□ 0.25
TRIM49D1C9J1S8 RGS3-206ENST00000374136 2092 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
TRIM49D1C9J1S8 OPN1LW-201ENST00000369951 1261 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
TRIM49D1C9J1S8 ESR1-204ENST00000406599 1251 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
TRIM49D1C9J1S8 SNHG11-204ENST00000420006 720 ntTSL 3 BASIC16.59■□□□□ 0.25
TRIM49D1C9J1S8 SNHG11-206ENST00000432153 1181 ntTSL 3 BASIC16.59■□□□□ 0.25
TRIM49D1C9J1S8 AL391069.2-202ENST00000447795 622 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
TRIM49D1C9J1S8 HOXB-AS2-201ENST00000464382 845 ntTSL 4 BASIC16.59■□□□□ 0.25
TRIM49D1C9J1S8 RAB42-202ENST00000465518 857 ntAPPRIS P1 TSL 2 BASIC16.59■□□□□ 0.25
TRIM49D1C9J1S8 NTMT1-207ENST00000482347 1072 ntTSL 2 BASIC16.59■□□□□ 0.25
TRIM49D1C9J1S8 SELENOS-203ENST00000526049 1188 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
TRIM49D1C9J1S8 AHSA1-208ENST00000555517 832 ntTSL 2 BASIC16.59■□□□□ 0.25
TRIM49D1C9J1S8 ZFPM1-205ENST00000569086 563 ntTSL 2 BASIC16.59■□□□□ 0.25
TRIM49D1C9J1S8 GEMIN7-203ENST00000591607 848 ntAPPRIS P1 TSL 3 BASIC16.59■□□□□ 0.25
TRIM49D1C9J1S8 AC004706.3-202ENST00000621574 984 ntBASIC16.59■□□□□ 0.25
TRIM49D1C9J1S8 ACY1-212ENST00000635797 1294 ntTSL 5 BASIC16.59■□□□□ 0.25
TRIM49D1C9J1S8 CD5L-201ENST00000368174 2191 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
TRIM49D1C9J1S8 SIT1-204ENST00000618781 1317 ntAPPRIS ALT2 TSL 5 BASIC16.59■□□□□ 0.25
TRIM49D1C9J1S8 RGR-202ENST00000359452 2247 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
TRIM49D1C9J1S8 FP565260.3-204ENST00000623795 2238 ntTSL 2 BASIC16.59■□□□□ 0.25
TRIM49D1C9J1S8 MDFIC-202ENST00000393486 4393 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
TRIM49D1C9J1S8 PLCG1-AS1-201ENST00000454626 1462 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
TRIM49D1C9J1S8 SLC1A7-204ENST00000611397 2499 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
TRIM49D1C9J1S8 PDHX-203ENST00000448838 2653 ntTSL 5 BASIC16.59■□□□□ 0.25
TRIM49D1C9J1S8 MSMO1-202ENST00000393766 1789 ntTSL 2 BASIC16.59■□□□□ 0.25
TRIM49D1C9J1S8 NPR3-203ENST00000415167 1753 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
TRIM49D1C9J1S8 DDX19B-207ENST00000563206 1765 ntTSL 5 BASIC16.59■□□□□ 0.25
TRIM49D1C9J1S8 AQP3-201ENST00000297991 1849 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
TRIM49D1C9J1S8 NPHP3-201ENST00000337331 4362 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
TRIM49D1C9J1S8 GPR89B-201ENST00000314163 1934 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
TRIM49D1C9J1S8 PLAA-205ENST00000520884 2041 ntTSL 2 BASIC16.58■□□□□ 0.25
TRIM49D1C9J1S8 TLDC2-201ENST00000217320 2083 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
TRIM49D1C9J1S8 CBX8-201ENST00000269385 3791 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
TRIM49D1C9J1S8 TOR4A-201ENST00000357503 4148 ntAPPRIS P1 TSL 2 BASIC16.58■□□□□ 0.25
TRIM49D1C9J1S8 CDK11B-201ENST00000340677 2534 ntTSL 1 (best) BASIC16.58■□□□□ 0.25
TRIM49D1C9J1S8 KCNQ2-209ENST00000625514 2925 ntTSL 5 BASIC16.58■□□□□ 0.24
TRIM49D1C9J1S8 DBN1-202ENST00000309007 2995 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.24
TRIM49D1C9J1S8 SLC12A5-209ENST00000616201 2955 ntTSL 5 BASIC16.58■□□□□ 0.24
TRIM49D1C9J1S8 CKAP4-201ENST00000378026 3093 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
TRIM49D1C9J1S8 SIT1-201ENST00000259608 1231 ntAPPRIS P2 TSL 1 (best) BASIC16.58■□□□□ 0.24
TRIM49D1C9J1S8 SGF29-201ENST00000317058 1153 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
TRIM49D1C9J1S8 AL512785.2-202ENST00000367932 830 ntTSL 4 BASIC16.58■□□□□ 0.24
TRIM49D1C9J1S8 DUSP12-201ENST00000367943 1270 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
TRIM49D1C9J1S8 SLC2A8-201ENST00000373352 914 ntTSL 2 BASIC16.58■□□□□ 0.24
TRIM49D1C9J1S8 VPS13A-AS1-201ENST00000415172 519 ntTSL 2 BASIC16.58■□□□□ 0.24
TRIM49D1C9J1S8 ISOC2-202ENST00000425675 998 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
TRIM49D1C9J1S8 PHGR1-201ENST00000448599 436 ntAPPRIS P1 TSL 5 BASIC16.58■□□□□ 0.24
TRIM49D1C9J1S8 FOSL1P1-201ENST00000511041 816 ntBASIC16.58■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 25.6 ms