Protein–RNA interactions for Protein: Q9UHB6

LIMA1, LIM domain and actin-binding protein 1, humanhuman

Known RBP Predictions only

Length 759 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1Q9UHB6 KRT35-201ENST00000246639 1778 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
LIMA1Q9UHB6 ARHGAP5-205ENST00000433497 3047 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
LIMA1Q9UHB6 TMPRSS2-206ENST00000458356 1701 ntAPPRIS P1 TSL 2 BASIC18.06■□□□□ 0.48
LIMA1Q9UHB6 MAPKAP1-202ENST00000350766 3256 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
LIMA1Q9UHB6 PSMD9-201ENST00000261817 2307 ntAPPRIS ALT1 TSL 2 BASIC18.06■□□□□ 0.48
LIMA1Q9UHB6 AC103702.1-201ENST00000548801 2630 ntBASIC18.06■□□□□ 0.48
LIMA1Q9UHB6 BCL2L12-203ENST00000441864 1371 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
LIMA1Q9UHB6 COL4A3BP-204ENST00000405807 2843 ntAPPRIS P1 TSL 5 BASIC18.06■□□□□ 0.48
LIMA1Q9UHB6 RHCE-201ENST00000294413 1591 ntAPPRIS P2 TSL 1 (best) BASIC18.06■□□□□ 0.48
LIMA1Q9UHB6 FAM3A-205ENST00000393572 1041 ntTSL 2 BASIC18.06■□□□□ 0.48
LIMA1Q9UHB6 CYCS-202ENST00000409409 974 ntAPPRIS P1 TSL 3 BASIC18.06■□□□□ 0.48
LIMA1Q9UHB6 CD99L2-206ENST00000466436 988 ntAPPRIS P4 TSL 1 (best) BASIC18.06■□□□□ 0.48
LIMA1Q9UHB6 TCTN1-208ENST00000471804 718 ntTSL 3 BASIC18.06■□□□□ 0.48
LIMA1Q9UHB6 MTRF1LP2-201ENST00000506027 1122 ntBASIC18.06■□□□□ 0.48
LIMA1Q9UHB6 AC004080.2-201ENST00000523331 556 ntTSL 4 BASIC18.06■□□□□ 0.48
LIMA1Q9UHB6 PTHLH-207ENST00000539239 890 ntAPPRIS ALT1 TSL 5 BASIC18.06■□□□□ 0.48
LIMA1Q9UHB6 LCE1C-202ENST00000607093 644 ntAPPRIS P2 BASIC18.06■□□□□ 0.48
LIMA1Q9UHB6 ACTL9-202ENST00000612068 1252 ntBASIC18.06■□□□□ 0.48
LIMA1Q9UHB6 LINC01666-201ENST00000623794 845 ntTSL 5 BASIC18.06■□□□□ 0.48
LIMA1Q9UHB6 ADORA1-209ENST00000640524 653 ntTSL 5 BASIC18.06■□□□□ 0.48
LIMA1Q9UHB6 UCKL1-201ENST00000354216 1837 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
LIMA1Q9UHB6 TCF25-202ENST00000263347 2377 ntTSL 5 BASIC18.06■□□□□ 0.48
LIMA1Q9UHB6 RPS5-202ENST00000596046 1520 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
LIMA1Q9UHB6 TUBB-206ENST00000330914 2632 ntTSL 2 BASIC18.06■□□□□ 0.48
LIMA1Q9UHB6 PPP1R21-202ENST00000294952 3142 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
LIMA1Q9UHB6 CHMP5-201ENST00000223500 1477 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
LIMA1Q9UHB6 RGL3-201ENST00000380456 2542 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
LIMA1Q9UHB6 MAPKAP1-206ENST00000373511 3252 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
LIMA1Q9UHB6 DCP1B-202ENST00000535873 2231 ntTSL 2 BASIC18.06■□□□□ 0.48
LIMA1Q9UHB6 C6orf136-203ENST00000376473 1402 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
LIMA1Q9UHB6 TUBB8-201ENST00000561967 1413 ntTSL 5 BASIC18.06■□□□□ 0.48
LIMA1Q9UHB6 IFT140-201ENST00000361339 2987 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
LIMA1Q9UHB6 PPP1CB-202ENST00000358506 4771 ntAPPRIS P1 TSL 5 BASIC18.06■□□□□ 0.48
LIMA1Q9UHB6 AC099508.1-201ENST00000499110 1666 ntTSL 4 BASIC18.06■□□□□ 0.48
LIMA1Q9UHB6 ITGB4-201ENST00000200181 5919 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
LIMA1Q9UHB6 TYSND1-201ENST00000287078 3644 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
LIMA1Q9UHB6 ACTL8-201ENST00000375406 1861 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
LIMA1Q9UHB6 MARCH1-203ENST00000503008 5877 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
LIMA1Q9UHB6 AQP3-201ENST00000297991 1849 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
LIMA1Q9UHB6 CCDC90B-202ENST00000455220 1550 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
LIMA1Q9UHB6 KDM6B-202ENST00000448097 5422 ntAPPRIS ALT2 TSL 5 BASIC18.05■□□□□ 0.48
LIMA1Q9UHB6 FAM86B2-202ENST00000309608 806 ntTSL 3 BASIC18.05■□□□□ 0.48
LIMA1Q9UHB6 FNDC11-202ENST00000370098 1112 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
LIMA1Q9UHB6 KRTAP5-11-201ENST00000398530 1021 ntAPPRIS P2 BASIC18.05■□□□□ 0.48
LIMA1Q9UHB6 FAM185BP-201ENST00000443595 716 ntBASIC18.05■□□□□ 0.48
LIMA1Q9UHB6 PGAP2-206ENST00000459679 795 ntTSL 2 BASIC18.05■□□□□ 0.48
LIMA1Q9UHB6 RNPS1P1-201ENST00000507437 918 ntBASIC18.05■□□□□ 0.48
LIMA1Q9UHB6 AL160237.2-201ENST00000556165 472 ntBASIC18.05■□□□□ 0.48
LIMA1Q9UHB6 RNPS1-222ENST00000567147 830 ntTSL 3 BASIC18.05■□□□□ 0.48
LIMA1Q9UHB6 MIR4515-201ENST00000584082 81 ntBASIC18.05■□□□□ 0.48
LIMA1Q9UHB6 SYNGR2-202ENST00000585591 949 ntAPPRIS P1 TSL 5 BASIC18.05■□□□□ 0.48
LIMA1Q9UHB6 NBPF14-202ENST00000593495 1082 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
LIMA1Q9UHB6 LINC01711-201ENST00000598340 967 ntBASIC18.05■□□□□ 0.48
LIMA1Q9UHB6 AL356488.2-201ENST00000602755 427 ntBASIC18.05■□□□□ 0.48
LIMA1Q9UHB6 DENND3-201ENST00000262585 5438 ntAPPRIS P2 TSL 5 BASIC18.05■□□□□ 0.48
LIMA1Q9UHB6 APH1A-203ENST00000369109 1713 ntAPPRIS P4 TSL 1 (best) BASIC18.05■□□□□ 0.48
LIMA1Q9UHB6 MPP3-201ENST00000398389 2182 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
LIMA1Q9UHB6 GHDC-207ENST00000587427 2396 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
LIMA1Q9UHB6 AC011270.2-201ENST00000624293 2550 ntBASIC18.05■□□□□ 0.48
LIMA1Q9UHB6 CLCNKB-201ENST00000375667 2129 ntTSL 2 BASIC18.05■□□□□ 0.48
LIMA1Q9UHB6 AC016027.1-202ENST00000607927 1699 ntBASIC18.05■□□□□ 0.48
LIMA1Q9UHB6 ATP6AP2-217ENST00000636580 2337 ntAPPRIS P2 TSL 1 (best) BASIC18.05■□□□□ 0.48
LIMA1Q9UHB6 CLEC18A-203ENST00000449317 1875 ntAPPRIS ALT2 TSL 5 BASIC18.05■□□□□ 0.48
LIMA1Q9UHB6 BCL2L12-202ENST00000246785 1431 ntAPPRIS P3 TSL 1 (best) BASIC18.05■□□□□ 0.48
LIMA1Q9UHB6 COL27A1-201ENST00000356083 7790 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
LIMA1Q9UHB6 ADGRB2-212ENST00000527361 4919 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
LIMA1Q9UHB6 PRR5-203ENST00000403581 2279 ntTSL 2 BASIC18.05■□□□□ 0.48
LIMA1Q9UHB6 AMT-233ENST00000636522 1620 ntTSL 2 BASIC18.05■□□□□ 0.48
LIMA1Q9UHB6 CISH-201ENST00000348721 2043 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
LIMA1Q9UHB6 SSFA2-201ENST00000320370 4965 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
LIMA1Q9UHB6 LSP1-204ENST00000406638 2640 ntAPPRIS ALT2 TSL 2 BASIC18.04■□□□□ 0.48
LIMA1Q9UHB6 ARHGEF1-204ENST00000378152 2986 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
LIMA1Q9UHB6 DNM1-208ENST00000486160 3181 ntAPPRIS ALT1 TSL 1 (best) BASIC18.04■□□□□ 0.48
LIMA1Q9UHB6 NTRK2-207ENST00000376214 5608 ntAPPRIS P3 TSL 5 BASIC18.04■□□□□ 0.48
LIMA1Q9UHB6 DCAF17-211ENST00000539783 5623 ntAPPRIS ALT2 TSL 5 BASIC18.04■□□□□ 0.48
LIMA1Q9UHB6 ZDHHC4-206ENST00000405731 1348 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
LIMA1Q9UHB6 FES-204ENST00000414248 2327 ntTSL 2 BASIC18.04■□□□□ 0.48
LIMA1Q9UHB6 PTBP1-202ENST00000350092 3069 ntAPPRIS ALT1 TSL 1 (best) BASIC18.04■□□□□ 0.48
LIMA1Q9UHB6 CENPX-201ENST00000306704 751 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
LIMA1Q9UHB6 MRPL20P1-201ENST00000400819 433 ntBASIC18.04■□□□□ 0.48
LIMA1Q9UHB6 ODF3B-204ENST00000405135 917 ntTSL 5 BASIC18.04■□□□□ 0.48
LIMA1Q9UHB6 TXNRD2-212ENST00000485358 850 ntTSL 2 BASIC18.04■□□□□ 0.48
LIMA1Q9UHB6 AC073648.2-201ENST00000510116 352 ntBASIC18.04■□□□□ 0.48
LIMA1Q9UHB6 AC079385.1-201ENST00000551505 570 ntTSL 4 BASIC18.04■□□□□ 0.48
LIMA1Q9UHB6 AC105339.3-201ENST00000560043 636 ntBASIC18.04■□□□□ 0.48
LIMA1Q9UHB6 CLEC4GP1-201ENST00000596555 870 ntBASIC18.04■□□□□ 0.48
LIMA1Q9UHB6 SMIM8-209ENST00000608868 815 ntAPPRIS P1 TSL 5 BASIC18.04■□□□□ 0.48
LIMA1Q9UHB6 ANO2-212ENST00000612575 1087 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
LIMA1Q9UHB6 AMZ2P1-202ENST00000430983 3425 ntTSL 2 BASIC18.04■□□□□ 0.48
LIMA1Q9UHB6 MYOD1-201ENST00000250003 1801 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
LIMA1Q9UHB6 DMAC2-210ENST00000592922 1622 ntTSL 2 BASIC18.04■□□□□ 0.48
LIMA1Q9UHB6 CBX3P2-201ENST00000579647 1429 ntTSL 2 BASIC18.04■□□□□ 0.48
LIMA1Q9UHB6 TNFAIP3-207ENST00000614035 1430 ntTSL 5 BASIC18.04■□□□□ 0.48
LIMA1Q9UHB6 CASK-203ENST00000378163 4411 ntAPPRIS ALT1 TSL 5 BASIC18.04■□□□□ 0.48
LIMA1Q9UHB6 RASGRP2-201ENST00000354024 2310 ntAPPRIS P2 TSL 1 (best) BASIC18.04■□□□□ 0.48
LIMA1Q9UHB6 HSPB7-204ENST00000411503 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC18.04■□□□□ 0.48
LIMA1Q9UHB6 GHDC-201ENST00000301671 2650 ntAPPRIS P1 TSL 2 BASIC18.04■□□□□ 0.48
LIMA1Q9UHB6 SLC4A3-204ENST00000373760 4134 ntAPPRIS P1 TSL 5 BASIC18.04■□□□□ 0.48
LIMA1Q9UHB6 AP000253.1-201ENST00000449339 2233 ntTSL 3 BASIC18.03■□□□□ 0.48
LIMA1Q9UHB6 PCDHGB2-202ENST00000622527 2588 ntAPPRIS P1 BASIC18.03■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 61.9 ms