Protein–RNA interactions for Protein: Q9UBD9

CLCF1, Cardiotrophin-like cytokine factor 1, humanhuman

Predictions only

Length 225 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCF1Q9UBD9 PDPK2P-201ENST00000382326 2387 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
CLCF1Q9UBD9 TDRD6-203ENST00000544460 8887 ntAPPRIS ALT2 TSL 2 BASIC14.68□□□□□ -0.06
CLCF1Q9UBD9 LETM2-201ENST00000297720 1693 ntTSL 2 BASIC14.68□□□□□ -0.06
CLCF1Q9UBD9 DIDO1-201ENST00000266070 8574 ntAPPRIS ALT2 TSL 5 BASIC14.68□□□□□ -0.06
CLCF1Q9UBD9 CTIF-201ENST00000256413 5750 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
CLCF1Q9UBD9 KAT7-213ENST00000510819 1769 ntTSL 2 BASIC14.68□□□□□ -0.06
CLCF1Q9UBD9 MEI1-215ENST00000540833 2326 ntTSL 5 BASIC14.67□□□□□ -0.06
CLCF1Q9UBD9 ZSWIM8-201ENST00000398706 6062 ntTSL 2 BASIC14.67□□□□□ -0.06
CLCF1Q9UBD9 SIT1-204ENST00000618781 1317 ntAPPRIS ALT2 TSL 5 BASIC14.67□□□□□ -0.06
CLCF1Q9UBD9 B3GNT8-201ENST00000321702 1874 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
CLCF1Q9UBD9 MANSC1-202ENST00000535902 5831 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
CLCF1Q9UBD9 CTNNAL1-204ENST00000374595 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC14.67□□□□□ -0.06
CLCF1Q9UBD9 AL139300.1-201ENST00000472726 2505 ntAPPRIS P1 TSL 2 BASIC14.67□□□□□ -0.06
CLCF1Q9UBD9 PLTP-204ENST00000420868 1420 ntTSL 2 BASIC14.67□□□□□ -0.06
CLCF1Q9UBD9 LIPE-AS1-201ENST00000457234 1501 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
CLCF1Q9UBD9 CYTH2-204ENST00000452733 4780 ntAPPRIS P2 TSL 1 (best) BASIC14.67□□□□□ -0.06
CLCF1Q9UBD9 TTLL10-202ENST00000379289 2259 ntAPPRIS P1 TSL 2 BASIC14.67□□□□□ -0.06
CLCF1Q9UBD9 RGL3-202ENST00000393423 2278 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
CLCF1Q9UBD9 BDKRB2-201ENST00000539359 1600 ntTSL 2 BASIC14.67□□□□□ -0.06
CLCF1Q9UBD9 DNM1-216ENST00000634267 2909 ntTSL 5 BASIC14.67□□□□□ -0.06
CLCF1Q9UBD9 SLC18B1-201ENST00000275227 2368 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
CLCF1Q9UBD9 SLC2A10-201ENST00000359271 4389 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
CLCF1Q9UBD9 FAM220BP-201ENST00000377689 816 ntBASIC14.67□□□□□ -0.06
CLCF1Q9UBD9 CXCL12-206ENST00000395795 404 ntTSL 5 BASIC14.67□□□□□ -0.06
CLCF1Q9UBD9 NUDT19-201ENST00000397061 2967 ntAPPRIS P1 TSL 2 BASIC14.67□□□□□ -0.06
CLCF1Q9UBD9 MIR943-201ENST00000401286 94 ntBASIC14.67□□□□□ -0.06
CLCF1Q9UBD9 PSMA8-203ENST00000415576 1280 ntAPPRIS ALT2 TSL 1 (best) BASIC14.67□□□□□ -0.06
CLCF1Q9UBD9 CDH23-AS1-201ENST00000428918 378 ntTSL 2 BASIC14.67□□□□□ -0.06
CLCF1Q9UBD9 C2orf88-205ENST00000443551 692 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
CLCF1Q9UBD9 ITGA9-AS1-209ENST00000450990 562 ntTSL 4 BASIC14.67□□□□□ -0.06
CLCF1Q9UBD9 PTGES3-205ENST00000456859 957 ntTSL 2 BASIC14.67□□□□□ -0.06
CLCF1Q9UBD9 AC018653.3-201ENST00000544657 749 ntTSL 3 BASIC14.67□□□□□ -0.06
CLCF1Q9UBD9 ZNF606-202ENST00000546715 636 ntTSL 4 BASIC14.67□□□□□ -0.06
CLCF1Q9UBD9 DUT-210ENST00000559935 569 ntTSL 3 BASIC14.67□□□□□ -0.06
CLCF1Q9UBD9 AJ003147.2-201ENST00000576468 629 ntTSL 3 BASIC14.67□□□□□ -0.06
CLCF1Q9UBD9 MIR4453-201ENST00000584019 89 ntBASIC14.67□□□□□ -0.06
CLCF1Q9UBD9 AC018529.1-201ENST00000613063 361 ntBASIC14.67□□□□□ -0.06
CLCF1Q9UBD9 FAHD2B-202ENST00000414820 1388 ntAPPRIS P1 TSL 5 BASIC14.67□□□□□ -0.06
CLCF1Q9UBD9 TTC8-202ENST00000345383 2329 ntTSL 5 BASIC14.67□□□□□ -0.06
CLCF1Q9UBD9 INPP4A-205ENST00000409851 3365 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
CLCF1Q9UBD9 ZFAND6-211ENST00000559157 1559 ntTSL 2 BASIC14.67□□□□□ -0.06
CLCF1Q9UBD9 SSBP3-205ENST00000417664 1666 ntTSL 5 BASIC14.67□□□□□ -0.06
CLCF1Q9UBD9 CCNL2-203ENST00000408952 1857 ntTSL 5 BASIC14.67□□□□□ -0.06
CLCF1Q9UBD9 CFL1-203ENST00000525451 1878 ntAPPRIS P1 TSL 2 BASIC14.67□□□□□ -0.06
CLCF1Q9UBD9 ACSM2B-211ENST00000567001 1988 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
CLCF1Q9UBD9 NRXN1-204ENST00000401669 5870 ntAPPRIS ALT1 TSL 5 BASIC14.67□□□□□ -0.06
CLCF1Q9UBD9 C8orf76-201ENST00000276704 1341 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
CLCF1Q9UBD9 TMEM161A-201ENST00000162044 1820 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
CLCF1Q9UBD9 BIN3-201ENST00000276416 1835 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
CLCF1Q9UBD9 MOCS1-206ENST00000425303 1920 ntTSL 2 BASIC14.66□□□□□ -0.06
CLCF1Q9UBD9 CPSF6-203ENST00000456847 1915 ntTSL 5 BASIC14.66□□□□□ -0.06
CLCF1Q9UBD9 WWTR1-201ENST00000360632 2103 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
CLCF1Q9UBD9 DCST1-202ENST00000368419 2207 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
CLCF1Q9UBD9 HDAC10-222ENST00000626012 2607 ntTSL 5 BASIC14.66□□□□□ -0.06
CLCF1Q9UBD9 PRDM8-203ENST00000504452 3706 ntAPPRIS P1 TSL 5 BASIC14.66□□□□□ -0.06
CLCF1Q9UBD9 SYNGAP1-202ENST00000418600 5828 ntTSL 5 BASIC14.66□□□□□ -0.06
CLCF1Q9UBD9 PLXNC1-201ENST00000258526 7346 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
CLCF1Q9UBD9 AATK-201ENST00000326724 5257 ntAPPRIS P3 TSL 5 BASIC14.66□□□□□ -0.06
CLCF1Q9UBD9 CDH24-201ENST00000267383 2873 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
CLCF1Q9UBD9 ABLIM2-202ENST00000361581 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC14.66□□□□□ -0.06
CLCF1Q9UBD9 NFASC-205ENST00000403080 2462 ntTSL 2 BASIC14.66□□□□□ -0.06
CLCF1Q9UBD9 ITGB2-AS1-202ENST00000441379 2282 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
CLCF1Q9UBD9 SAR1B-208ENST00000507419 2287 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
CLCF1Q9UBD9 MON2-213ENST00000552738 5543 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
CLCF1Q9UBD9 HIST1H2AC-202ENST00000377791 1654 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
CLCF1Q9UBD9 TGIF1-205ENST00000401449 1670 ntTSL 2 BASIC14.66□□□□□ -0.06
CLCF1Q9UBD9 CLEC1B-201ENST00000298527 952 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
CLCF1Q9UBD9 C6orf52-202ENST00000379586 430 ntAPPRIS ALT2 TSL 2 BASIC14.66□□□□□ -0.06
CLCF1Q9UBD9 TNNT3-204ENST00000381558 1258 ntAPPRIS ALT2 TSL 5 BASIC14.66□□□□□ -0.06
CLCF1Q9UBD9 AC055876.3-201ENST00000431496 288 ntBASIC14.66□□□□□ -0.06
CLCF1Q9UBD9 BCRP1-201ENST00000444246 691 ntBASIC14.66□□□□□ -0.06
CLCF1Q9UBD9 AC093724.1-201ENST00000448659 1027 ntBASIC14.66□□□□□ -0.06
CLCF1Q9UBD9 AC098859.1-201ENST00000502915 1238 ntBASIC14.66□□□□□ -0.06
CLCF1Q9UBD9 AC106897.1-201ENST00000512874 394 ntTSL 2 BASIC14.66□□□□□ -0.06
CLCF1Q9UBD9 AC131009.1-201ENST00000539078 426 ntTSL 5 BASIC14.66□□□□□ -0.06
CLCF1Q9UBD9 NDUFA4L2-202ENST00000554503 1177 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
CLCF1Q9UBD9 IFT20-215ENST00000585313 852 ntAPPRIS P4 TSL 3 BASIC14.66□□□□□ -0.06
CLCF1Q9UBD9 AL096865.1-201ENST00000606796 927 ntBASIC14.66□□□□□ -0.06
CLCF1Q9UBD9 AL158211.3-201ENST00000607385 239 ntBASIC14.66□□□□□ -0.06
CLCF1Q9UBD9 FHL2-212ENST00000607522 759 ntTSL 2 BASIC14.66□□□□□ -0.06
CLCF1Q9UBD9 AC138649.4-201ENST00000612222 287 ntBASIC14.66□□□□□ -0.06
CLCF1Q9UBD9 PCDHGC4-204ENST00000618371 812 ntTSL 3 BASIC14.66□□□□□ -0.06
CLCF1Q9UBD9 ARL6IP6-201ENST00000326446 2805 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
CLCF1Q9UBD9 OSBP2-211ENST00000446658 2836 ntAPPRIS ALT2 TSL 1 (best) BASIC14.66□□□□□ -0.06
CLCF1Q9UBD9 VSIG10L2-202ENST00000638636 2304 ntAPPRIS P1 TSL 5 BASIC14.66□□□□□ -0.06
CLCF1Q9UBD9 EPN2-203ENST00000395618 2216 ntTSL 2 BASIC14.66□□□□□ -0.06
CLCF1Q9UBD9 MTHFD1L-211ENST00000611279 3475 ntAPPRIS ALT1 TSL 5 BASIC14.66□□□□□ -0.06
CLCF1Q9UBD9 GOLGA2P9-201ENST00000596977 1937 ntBASIC14.66□□□□□ -0.06
CLCF1Q9UBD9 RND2-202ENST00000587250 4147 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
CLCF1Q9UBD9 SMARCA4-215ENST00000590574 5282 ntAPPRIS ALT1 TSL 5 BASIC14.66□□□□□ -0.06
CLCF1Q9UBD9 CPVL-202ENST00000396276 1739 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
CLCF1Q9UBD9 TSPOAP1-202ENST00000343736 5947 ntAPPRIS P3 TSL 1 (best) BASIC14.66□□□□□ -0.06
CLCF1Q9UBD9 AL138752.2-201ENST00000540557 2591 ntAPPRIS P1 TSL 5 BASIC14.66□□□□□ -0.06
CLCF1Q9UBD9 FOXD4L1-201ENST00000306507 2491 ntAPPRIS P1 BASIC14.66□□□□□ -0.06
CLCF1Q9UBD9 LSR-212ENST00000602122 2480 ntAPPRIS ALT2 TSL 2 BASIC14.66□□□□□ -0.06
CLCF1Q9UBD9 CHID1-215ENST00000528581 1431 ntTSL 2 BASIC14.66□□□□□ -0.06
CLCF1Q9UBD9 PUDP-203ENST00000424830 1334 ntTSL 3 BASIC14.66□□□□□ -0.06
CLCF1Q9UBD9 CLDN11-201ENST00000064724 2169 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
CLCF1Q9UBD9 GLIS1-202ENST00000628545 2807 ntAPPRIS ALT2 TSL 5 BASIC14.65□□□□□ -0.06
CLCF1Q9UBD9 SYTL3-202ENST00000360448 2504 ntAPPRIS ALT1 TSL 5 BASIC14.65□□□□□ -0.06
Retrieved 100 of 98,524 protein–RNA pairs in 77.4 ms